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Fix pysam version in riboplot (was 0.7.7 instead of 0.8.3). Fix move sys import to the top in ribocount.py, riboplot.py. Minor: * Include an empty conditional when no RNA coverage is required. * Remove output directories after zip file is created.
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Thu, 02 Jul 2015 11:53:59 +0100
parents ca58e9466cbf
children 8e1efafa6277
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<!DOCTYPE html>
<html lang="en">
<head>

    <!-- Basic Page Needs
    –––––––––––––––––––––––––––––––––––––––––––––––––– -->
    <meta charset="utf-8">
    <title>Ribo-Seq profile plot</title>
    <meta name="description" content="">
    <meta name="author" content="">

    <!-- Mobile Specific Metas
    –––––––––––––––––––––––––––––––––––––––––––––––––– -->
    <meta name="viewport" content="width=device-width, initial-scale=1">

    <!-- FONT
    –––––––––––––––––––––––––––––––––––––––––––––––––– -->
    <!--<link href="http://fonts.googleapis.com/css?family=Open+Sans:400,300,600"-->
          <!--rel="stylesheet" type="text/css">-->

    <!-- CSS
    –––––––––––––––––––––––––––––––––––––––––––––––––– -->
    <link rel="stylesheet" href="css/normalize.css">
    <link rel="stylesheet" href="css/skeleton.css">
    <link rel="stylesheet" href="css/custom.css">

    <!-- Favicon
    –––––––––––––––––––––––––––––––––––––––––––––––––– -->
    <link rel="icon" type="image/png" href="images/favicon.png">

</head>
<body>

<!-- Primary Page Layout
–––––––––––––––––––––––––––––––––––––––––––––––––– -->
<div class="container">
    <div class="row">
        <div id="main" class="twelve columns">
            <center>
                <h3>Ribo-Seq profile plot</h3>
                <p>
                <img width="100%" class="u-max-full-width" src="ribograph.png"/><br>
                <p>
                <h5>Download plots<br>
                    <a href="ribograph.png">PNG</a>, <a href="ribograph.svg">SVG</a>
                </h5>

                <h5>Download counts<br>
                 <a href="RiboCounts.csv">RiboCounts.csv</a>
                </h5>
                <p>
                    <small>
                        (Right click --> Save link/target as...)
                    </small>
                </p>
            </center>
        </div>
    </div>
</div>
</body>
</html>