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Fix pysam version in riboplot (was 0.7.7 instead of 0.8.3). Fix move sys import to the top in ribocount.py, riboplot.py. Minor: * Include an empty conditional when no RNA coverage is required. * Remove output directories after zip file is created.
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Thu, 02 Jul 2015 11:53:59 +0100 (2015-07-02)
parents ca58e9466cbf
children 8e1efafa6277
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1 <!DOCTYPE html>
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2 <html lang="en">
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3 <head>
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5 <!-- Basic Page Needs
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6 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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7 <meta charset="utf-8">
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8 <title>Ribo-Seq profile plot</title>
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9 <meta name="description" content="">
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10 <meta name="author" content="">
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12 <!-- Mobile Specific Metas
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13 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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14 <meta name="viewport" content="width=device-width, initial-scale=1">
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16 <!-- FONT
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17 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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18 <!--<link href="http://fonts.googleapis.com/css?family=Open+Sans:400,300,600"-->
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19 <!--rel="stylesheet" type="text/css">-->
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21 <!-- CSS
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22 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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23 <link rel="stylesheet" href="css/normalize.css">
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24 <link rel="stylesheet" href="css/skeleton.css">
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25 <link rel="stylesheet" href="css/custom.css">
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27 <!-- Favicon
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28 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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29 <link rel="icon" type="image/png" href="images/favicon.png">
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31 </head>
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32 <body>
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34 <!-- Primary Page Layout
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35 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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36 <div class="container">
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37 <div class="row">
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38 <div id="main" class="twelve columns">
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39 <center>
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40 <h3>Ribo-Seq profile plot</h3>
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41 <p>
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42 <img width="100%" class="u-max-full-width" src="ribograph.png"/><br>
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43 <p>
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44 <h5>Download plots<br>
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45 <a href="ribograph.png">PNG</a>, <a href="ribograph.svg">SVG</a>
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48 <h5>Download counts<br>
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49 <a href="RiboCounts.csv">RiboCounts.csv</a>
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50 </h5>
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53 (Right click --> Save link/target as...)
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54 </small>
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55 </p>
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56 </center>
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57 </div>
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58 </div>
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59 </div>
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60 </body>
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61 </html>