Mercurial > repos > vimalkumarvelayudhan > riboplot
changeset 33:42fe64cac818
Add bedtools as a dependency for riboplot
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Fri, 30 Oct 2015 12:14:40 +0000 |
| parents | fc2094c0f355 |
| children | 1cafe3494b3a |
| files | README.rst riboplot.xml tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 14 deletions(-) [+] |
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--- a/README.rst Fri Oct 30 10:10:05 2015 +0000 +++ b/README.rst Fri Oct 30 12:14:40 2015 +0000 @@ -21,13 +21,6 @@ .. note:: - 1. RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. - - This release of riboplot has been tested with bedtools version ``2.17.0``. + Matplotlib installation requires freetype headers and libraries installed + (``libfreetype6-dev`` on Ubuntu 14.04). - On Ubuntu and derivatives, bedtools can be installed from the repositories using:: - - sudo apt-get install bedtools - - 2. Matplotlib installation requires freetype headers and libraries installed - (``libfreetype6-dev`` on Ubuntu 14.04).
--- a/riboplot.xml Fri Oct 30 10:10:05 2015 +0000 +++ b/riboplot.xml Fri Oct 30 12:14:40 2015 +0000 @@ -3,6 +3,7 @@ </description> <requirements> <requirement type="package" version="0.2.2">riboplot</requirement> + <requirement type="package" version="2.24">bedtools</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error" />
--- a/tool_dependencies.xml Fri Oct 30 10:10:05 2015 +0000 +++ b/tool_dependencies.xml Fri Oct 30 12:14:40 2015 +0000 @@ -10,11 +10,10 @@ </actions> </install> <readme> - Note: - - Matplotlib installation requires freetype headers and libraries installed (libfreetype6-dev on Ubuntu 14.04). - - RNA coverage requires bedtools installed. + Please check README.rst </readme> </package> + <package name="bedtools" version="2.24"> + <repository name="package_bedtools_2_24" owner="iuc" /> + </package> </tool_dependency>