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changeset 31:69f43f4144df

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Use latest version of riboplot from PyPI (0.2.2)
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 30 Oct 2015 10:01:30 +0000
parents b26c8f3b5aa6
children fc2094c0f355
files ribocount.xml riboplot.xml tool_dependencies.xml
diffstat 3 files changed, 9 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/ribocount.xml	Fri Oct 16 17:19:33 2015 +0100
+++ b/ribocount.xml	Fri Oct 30 10:01:30 2015 +0000
@@ -2,7 +2,7 @@
     <description>Get read counts for all transcripts in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.2.1">riboplot</requirement>
+        <requirement type="package" version="0.2.2">riboplot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
--- a/riboplot.xml	Fri Oct 16 17:19:33 2015 +0100
+++ b/riboplot.xml	Fri Oct 30 10:01:30 2015 +0000
@@ -2,7 +2,7 @@
     <description>Plot and output read counts for a single transcript in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.2.1">riboplot</requirement>
+        <requirement type="package" version="0.2.2">riboplot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
--- a/tool_dependencies.xml	Fri Oct 16 17:19:33 2015 +0100
+++ b/tool_dependencies.xml	Fri Oct 30 10:01:30 2015 +0000
@@ -1,16 +1,20 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="riboplot" version="0.2.1">
+    <package name="riboplot" version="0.2.2">
         <install version="1.0">
             <actions>
-                <action type="setup_virtualenv">riboplot==0.2.1</action>
+                <action type="setup_virtualenv">riboplot==0.2.2</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR/venv/bin</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
-           Note: RNA coverage requires bedtools installed.
+            Note:
+
+            Matplotlib installation requires freetype headers and libraries installed (libfreetype6-dev on Ubuntu 14.04).
+
+            RNA coverage requires bedtools installed.
         </readme>
     </package>
 </tool_dependency>