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annotate deseq-hts_1.0/bin/start_interpreter.sh @ 10:2fe512c7bfdf draft

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DESeq2 version 1.0.19 added to the repo
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:15:34 -0400
parents e27b4f7811c2
children
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94a108763d9e deseq-hts version 1.0 wraps the DESeq 1.6.0
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1 #/bin/bash
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2 # Copyright (C) 2010-2012 Max Planck Society
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4 set -e
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6 . `dirname $0`/deseq_config.sh
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e27b4f7811c2 Updated DESeq version 1.12
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8 export MATLAB_RETURN_FILE=`mktemp`
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10 if [ "$INTERPRETER" == 'octave' ];
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11 then
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12 echo exit | ${OCTAVE_BIN_PATH} --no-window-system --silent --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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13 fi
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15 if [ "$INTERPRETER" == 'matlab' ];
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16 then
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17 echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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18 fi
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20 test -f $MATLAB_RETURN_FILE || exit 0
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21 ret=`cat $MATLAB_RETURN_FILE` ;
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22 rm -f $MATLAB_RETURN_FILE
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23 exit $ret
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