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annotate deseq-hts_2.0/bin/start_interpreter.sh @ 11:cec4b4fb30be draft default tip

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DEXSeq version 1.6 added
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:22:45 -0400
parents 2fe512c7bfdf
children
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1 #/bin/bash
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2 ##
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3 # Copyright (C) 2009-2013 Max Planck Society and Memorial Sloan Kettering Cancer Center
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4 ##
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5
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6 set -e
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8 . `dirname $0`/deseq2_config.sh
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10 export MATLAB_RETURN_FILE=`mktemp`
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12 if [ "$INTERPRETER" == 'octave' ];
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13 then
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14 echo exit | ${OCTAVE_BIN_PATH} --no-window-system --silent --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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15 fi
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17 if [ "$INTERPRETER" == 'matlab' ];
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18 then
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19 echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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20 fi
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22 test -f $MATLAB_RETURN_FILE || exit 0
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23 ret=`cat $MATLAB_RETURN_FILE` ;
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24 rm -f $MATLAB_RETURN_FILE
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25 exit $ret
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