Mercurial > repos > vipints > deseq_hts
diff deseq-hts_2.0/bin/start_interpreter.sh @ 10:2fe512c7bfdf draft
DESeq2 version 1.0.19 added to the repo
| author | vipints <vipin@cbio.mskcc.org> |
|---|---|
| date | Tue, 08 Oct 2013 08:15:34 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/deseq-hts_2.0/bin/start_interpreter.sh Tue Oct 08 08:15:34 2013 -0400 @@ -0,0 +1,26 @@ +#/bin/bash +## +# Copyright (C) 2009-2013 Max Planck Society and Memorial Sloan Kettering Cancer Center +## + +set -e + +. `dirname $0`/deseq2_config.sh + +export MATLAB_RETURN_FILE=`mktemp` + +if [ "$INTERPRETER" == 'octave' ]; +then + echo exit | ${OCTAVE_BIN_PATH} --no-window-system --silent --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; +fi + +if [ "$INTERPRETER" == 'matlab' ]; +then + echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; +fi + +test -f $MATLAB_RETURN_FILE || exit 0 +ret=`cat $MATLAB_RETURN_FILE` ; +rm -f $MATLAB_RETURN_FILE +exit $ret +