Mercurial > repos > vipints > deseq_hts
comparison deseq-hts_2.0/bin/deseq2_config.sh.sample @ 10:2fe512c7bfdf draft
DESeq2 version 1.0.19 added to the repo
| author | vipints <vipin@cbio.mskcc.org> |
|---|---|
| date | Tue, 08 Oct 2013 08:15:34 -0400 |
| parents | |
| children |
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| 9:e27b4f7811c2 | 10:2fe512c7bfdf |
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| 1 #!/bin/bash | |
| 2 export DESEQ2_VERSION=1.0.19 | |
| 3 export DESEQ2_PATH=/home/galaxy/software/DESeq2-hts/ | |
| 4 export DESEQ2_SRC_PATH=$DESEQ2_PATH/src | |
| 5 export DESEQ2_BIN_PATH=$DESEQ2_PATH/bin | |
| 6 export INTERPRETER=octave | |
| 7 export MATLAB_BIN_PATH= | |
| 8 export MATLAB_MEX_PATH= | |
| 9 export MATLAB_INCLUDE_DIR= | |
| 10 export OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave | |
| 11 export OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile | |
| 12 export SAMTOOLS_DIR=/home/galaxy/software/samtools-0.1.19/ | |
| 13 export PYTHON_PATH=/usr/bin/python | |
| 14 export SCIPY_PATH=/home/galaxy/software/lib/python2.6/site-packages/ | |
| 15 export R_PATH=/home/galaxy/software/bin/R | |
| 16 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/oqtansTools/oqtans_dep/octave-3.6.2_64/lib/octave/3.6.2/ | |
| 17 export ENVIRONMENT=galaxy |