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annotate deseq-hts_2.0/bin/deseq2_config.sh.sample @ 10:2fe512c7bfdf draft

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DESeq2 version 1.0.19 added to the repo
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:15:34 -0400
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2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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1 #!/bin/bash
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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2 export DESEQ2_VERSION=1.0.19
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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3 export DESEQ2_PATH=/home/galaxy/software/DESeq2-hts/
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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4 export DESEQ2_SRC_PATH=$DESEQ2_PATH/src
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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5 export DESEQ2_BIN_PATH=$DESEQ2_PATH/bin
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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6 export INTERPRETER=octave
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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7 export MATLAB_BIN_PATH=
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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8 export MATLAB_MEX_PATH=
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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9 export MATLAB_INCLUDE_DIR=
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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10 export OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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11 export OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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12 export SAMTOOLS_DIR=/home/galaxy/software/samtools-0.1.19/
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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13 export PYTHON_PATH=/usr/bin/python
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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14 export SCIPY_PATH=/home/galaxy/software/lib/python2.6/site-packages/
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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15 export R_PATH=/home/galaxy/software/bin/R
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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16 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/oqtansTools/oqtans_dep/octave-3.6.2_64/lib/octave/3.6.2/
2fe512c7bfdf DESeq2 version 1.0.19 added to the repo
vipints <vipin@cbio.mskcc.org>
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17 export ENVIRONMENT=galaxy