Mercurial > repos > vipints > deseq_hts
comparison deseq-hts_2.0/bin/start_interpreter.sh @ 10:2fe512c7bfdf draft
DESeq2 version 1.0.19 added to the repo
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 08:15:34 -0400 |
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9:e27b4f7811c2 | 10:2fe512c7bfdf |
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1 #/bin/bash | |
2 ## | |
3 # Copyright (C) 2009-2013 Max Planck Society and Memorial Sloan Kettering Cancer Center | |
4 ## | |
5 | |
6 set -e | |
7 | |
8 . `dirname $0`/deseq2_config.sh | |
9 | |
10 export MATLAB_RETURN_FILE=`mktemp` | |
11 | |
12 if [ "$INTERPRETER" == 'octave' ]; | |
13 then | |
14 echo exit | ${OCTAVE_BIN_PATH} --no-window-system --silent --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; | |
15 fi | |
16 | |
17 if [ "$INTERPRETER" == 'matlab' ]; | |
18 then | |
19 echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ2_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; | |
20 fi | |
21 | |
22 test -f $MATLAB_RETURN_FILE || exit 0 | |
23 ret=`cat $MATLAB_RETURN_FILE` ; | |
24 rm -f $MATLAB_RETURN_FILE | |
25 exit $ret | |
26 |