Mercurial > repos > vipints > fml_gff3togtf

comparison GFFtools-GX/test-data/UCSC_transcripts.gtf @ 3:ff2c2e6f4ab3

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Uploaded version 2.0.0 of gfftools ready to import to local instance
author vipints
date Wed, 11 Jun 2014 16:29:25 -0400
parents
children
comparison
equal deleted inserted replaced
2:db3c67b03d55 3:ff2c2e6f4ab3
1 chr1 hg19_ccdsGene start_codon 861322 861324 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
2 chr1 hg19_ccdsGene CDS 861322 861393 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
3 chr1 hg19_ccdsGene exon 861322 861393 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
4 chr1 hg19_ccdsGene CDS 865535 865716 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
5 chr1 hg19_ccdsGene exon 865535 865716 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
6 chr1 hg19_ccdsGene CDS 866419 866469 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
7 chr1 hg19_ccdsGene exon 866419 866469 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
8 chr1 hg19_ccdsGene CDS 871152 871276 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
9 chr1 hg19_ccdsGene exon 871152 871276 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
10 chr1 hg19_ccdsGene CDS 874420 874509 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
11 chr1 hg19_ccdsGene exon 874420 874509 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
12 chr1 hg19_ccdsGene CDS 874655 874840 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
13 chr1 hg19_ccdsGene exon 874655 874840 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
14 chr1 hg19_ccdsGene CDS 876524 876686 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
15 chr1 hg19_ccdsGene exon 876524 876686 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
16 chr1 hg19_ccdsGene CDS 877516 877631 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
17 chr1 hg19_ccdsGene exon 877516 877631 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
18 chr1 hg19_ccdsGene CDS 877790 877868 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
19 chr1 hg19_ccdsGene exon 877790 877868 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
20 chr1 hg19_ccdsGene CDS 877939 878438 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
21 chr1 hg19_ccdsGene exon 877939 878438 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
22 chr1 hg19_ccdsGene CDS 878633 878757 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
23 chr1 hg19_ccdsGene exon 878633 878757 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
24 chr1 hg19_ccdsGene CDS 879078 879188 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
25 chr1 hg19_ccdsGene exon 879078 879188 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
26 chr1 hg19_ccdsGene CDS 879288 879530 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
27 chr1 hg19_ccdsGene stop_codon 879531 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
28 chr1 hg19_ccdsGene exon 879288 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
29 chr1 hg19_ccdsGene stop_codon 880074 880076 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
30 chr1 hg19_ccdsGene CDS 880077 880180 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
31 chr1 hg19_ccdsGene exon 880074 880180 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
32 chr1 hg19_ccdsGene CDS 880437 880526 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
33 chr1 hg19_ccdsGene exon 880437 880526 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
34 chr1 hg19_ccdsGene CDS 880898 881033 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
35 chr1 hg19_ccdsGene exon 880898 881033 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
36 chr1 hg19_ccdsGene CDS 881553 881666 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
37 chr1 hg19_ccdsGene exon 881553 881666 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
38 chr1 hg19_ccdsGene CDS 881782 881925 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
39 chr1 hg19_ccdsGene exon 881782 881925 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
40 chr1 hg19_ccdsGene CDS 883511 883612 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
41 chr1 hg19_ccdsGene exon 883511 883612 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
42 chr1 hg19_ccdsGene CDS 883870 883983 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
43 chr1 hg19_ccdsGene exon 883870 883983 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
44 chr1 hg19_ccdsGene CDS 886507 886618 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
45 chr1 hg19_ccdsGene exon 886507 886618 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
46 chr1 hg19_ccdsGene CDS 887380 887519 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
47 chr1 hg19_ccdsGene exon 887380 887519 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
48 chr1 hg19_ccdsGene CDS 887792 887980 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
49 chr1 hg19_ccdsGene exon 887792 887980 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
50 chr1 hg19_ccdsGene CDS 888555 888668 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
51 chr1 hg19_ccdsGene exon 888555 888668 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
52 chr1 hg19_ccdsGene CDS 889162 889272 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
53 chr1 hg19_ccdsGene exon 889162 889272 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
54 chr1 hg19_ccdsGene CDS 889384 889462 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
55 chr1 hg19_ccdsGene exon 889384 889462 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
56 chr1 hg19_ccdsGene CDS 891303 891393 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
57 chr1 hg19_ccdsGene exon 891303 891393 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
58 chr1 hg19_ccdsGene CDS 891475 891595 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
59 chr1 hg19_ccdsGene exon 891475 891595 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
60 chr1 hg19_ccdsGene CDS 892274 892405 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
61 chr1 hg19_ccdsGene exon 892274 892405 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
62 chr1 hg19_ccdsGene CDS 892479 892653 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
63 chr1 hg19_ccdsGene exon 892479 892653 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
64 chr1 hg19_ccdsGene CDS 894309 894461 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
65 chr1 hg19_ccdsGene exon 894309 894461 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
66 chr1 hg19_ccdsGene CDS 894595 894620 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
67 chr1 hg19_ccdsGene start_codon 894618 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
68 chr1 hg19_ccdsGene exon 894595 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
69 chr1 hg19_ccdsGene start_codon 896074 896076 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
70 chr1 hg19_ccdsGene CDS 896074 896180 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
71 chr1 hg19_ccdsGene exon 896074 896180 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
72 chr1 hg19_ccdsGene CDS 896673 896932 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
73 chr1 hg19_ccdsGene exon 896673 896932 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
74 chr1 hg19_ccdsGene CDS 897009 897130 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
75 chr1 hg19_ccdsGene exon 897009 897130 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
76 chr1 hg19_ccdsGene CDS 897206 897427 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
77 chr1 hg19_ccdsGene exon 897206 897427 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
78 chr1 hg19_ccdsGene CDS 897735 897851 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
79 chr1 hg19_ccdsGene exon 897735 897851 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
80 chr1 hg19_ccdsGene CDS 898084 898297 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
81 chr1 hg19_ccdsGene exon 898084 898297 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
82 chr1 hg19_ccdsGene CDS 898489 898633 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
83 chr1 hg19_ccdsGene exon 898489 898633 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
84 chr1 hg19_ccdsGene CDS 898717 898884 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
85 chr1 hg19_ccdsGene exon 898717 898884 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
86 chr1 hg19_ccdsGene CDS 899300 899388 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
87 chr1 hg19_ccdsGene exon 899300 899388 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
88 chr1 hg19_ccdsGene CDS 899487 899560 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
89 chr1 hg19_ccdsGene exon 899487 899560 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
90 chr1 hg19_ccdsGene CDS 899729 899910 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
91 chr1 hg19_ccdsGene exon 899729 899910 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
92 chr1 hg19_ccdsGene CDS 900343 900568 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
93 chr1 hg19_ccdsGene stop_codon 900569 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
94 chr1 hg19_ccdsGene exon 900343 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
95 chr1 hg19_ccdsGene start_codon 901912 901914 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
96 chr1 hg19_ccdsGene CDS 901912 901994 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
97 chr1 hg19_ccdsGene exon 901912 901994 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
98 chr1 hg19_ccdsGene CDS 902084 902183 0.000000 + 1 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
99 chr1 hg19_ccdsGene exon 902084 902183 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
100 chr1 hg19_ccdsGene CDS 905657 905803 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
101 chr1 hg19_ccdsGene exon 905657 905803 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
102 chr1 hg19_ccdsGene CDS 905901 905981 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
103 chr1 hg19_ccdsGene exon 905901 905981 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
104 chr1 hg19_ccdsGene CDS 906066 906138 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
105 chr1 hg19_ccdsGene exon 906066 906138 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
106 chr1 hg19_ccdsGene CDS 906259 906386 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
107 chr1 hg19_ccdsGene exon 906259 906386 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
108 chr1 hg19_ccdsGene CDS 906493 906588 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
109 chr1 hg19_ccdsGene exon 906493 906588 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
110 chr1 hg19_ccdsGene CDS 906704 906784 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
111 chr1 hg19_ccdsGene exon 906704 906784 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
112 chr1 hg19_ccdsGene CDS 907455 907530 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
113 chr1 hg19_ccdsGene exon 907455 907530 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
114 chr1 hg19_ccdsGene CDS 907668 907804 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
115 chr1 hg19_ccdsGene exon 907668 907804 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
116 chr1 hg19_ccdsGene CDS 908241 908390 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
117 chr1 hg19_ccdsGene exon 908241 908390 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
118 chr1 hg19_ccdsGene CDS 908566 908706 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
119 chr1 hg19_ccdsGene exon 908566 908706 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
120 chr1 hg19_ccdsGene CDS 908880 909020 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
121 chr1 hg19_ccdsGene exon 908880 909020 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
122 chr1 hg19_ccdsGene CDS 909213 909431 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
123 chr1 hg19_ccdsGene exon 909213 909431 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
124 chr1 hg19_ccdsGene CDS 909696 909744 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
125 chr1 hg19_ccdsGene exon 909696 909744 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
126 chr1 hg19_ccdsGene CDS 909822 909952 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
127 chr1 hg19_ccdsGene stop_codon 909953 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
128 chr1 hg19_ccdsGene exon 909822 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
129