view GFFtools-GX/test-data/UCSC_transcripts.gtf @ 3:ff2c2e6f4ab3

Uploaded version 2.0.0 of gfftools ready to import to local instance
author vipints
date Wed, 11 Jun 2014 16:29:25 -0400
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chr1	hg19_ccdsGene	start_codon	861322	861324	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	861322	861393	0.000000	+	0	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	861322	861393	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	865535	865716	0.000000	+	0	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	865535	865716	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	866419	866469	0.000000	+	1	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	866419	866469	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	871152	871276	0.000000	+	1	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	871152	871276	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	874420	874509	0.000000	+	2	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	874420	874509	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	874655	874840	0.000000	+	2	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	874655	874840	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	876524	876686	0.000000	+	2	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	876524	876686	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	877516	877631	0.000000	+	1	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	877516	877631	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	877790	877868	0.000000	+	2	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	877790	877868	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	877939	878438	0.000000	+	1	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	877939	878438	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	878633	878757	0.000000	+	2	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	878633	878757	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	879078	879188	0.000000	+	0	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	879078	879188	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	CDS	879288	879530	0.000000	+	0	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	stop_codon	879531	879533	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	exon	879288	879533	0.000000	+	.	gene_id "CCDS2.2"; transcript_id "CCDS2.2"; 
chr1	hg19_ccdsGene	stop_codon	880074	880076	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	880077	880180	0.000000	-	2	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	880074	880180	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	880437	880526	0.000000	-	2	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	880437	880526	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	880898	881033	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	880898	881033	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	881553	881666	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	881553	881666	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	881782	881925	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	881782	881925	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	883511	883612	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	883511	883612	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	883870	883983	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	883870	883983	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	886507	886618	0.000000	-	1	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	886507	886618	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	887380	887519	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	887380	887519	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	887792	887980	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	887792	887980	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	888555	888668	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	888555	888668	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	889162	889272	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	889162	889272	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	889384	889462	0.000000	-	1	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	889384	889462	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	891303	891393	0.000000	-	2	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	891303	891393	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	891475	891595	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	891475	891595	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	892274	892405	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	892274	892405	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	892479	892653	0.000000	-	1	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	892479	892653	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	894309	894461	0.000000	-	1	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	894309	894461	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	CDS	894595	894620	0.000000	-	0	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	start_codon	894618	894620	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	exon	894595	894620	0.000000	-	.	gene_id "CCDS3.1"; transcript_id "CCDS3.1"; 
chr1	hg19_ccdsGene	start_codon	896074	896076	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	896074	896180	0.000000	+	0	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	896074	896180	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	896673	896932	0.000000	+	1	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	896673	896932	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	897009	897130	0.000000	+	2	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	897009	897130	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	897206	897427	0.000000	+	0	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	897206	897427	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	897735	897851	0.000000	+	0	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	897735	897851	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	898084	898297	0.000000	+	0	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	898084	898297	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	898489	898633	0.000000	+	2	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	898489	898633	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	898717	898884	0.000000	+	1	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	898717	898884	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	899300	899388	0.000000	+	1	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	899300	899388	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	899487	899560	0.000000	+	2	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	899487	899560	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	899729	899910	0.000000	+	0	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	899729	899910	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	CDS	900343	900568	0.000000	+	1	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	stop_codon	900569	900571	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	exon	900343	900571	0.000000	+	.	gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; 
chr1	hg19_ccdsGene	start_codon	901912	901914	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	901912	901994	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	901912	901994	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	902084	902183	0.000000	+	1	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	902084	902183	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	905657	905803	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	905657	905803	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	905901	905981	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	905901	905981	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	906066	906138	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	906066	906138	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	906259	906386	0.000000	+	2	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	906259	906386	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	906493	906588	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	906493	906588	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	906704	906784	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	906704	906784	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	907455	907530	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	907455	907530	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	907668	907804	0.000000	+	2	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	907668	907804	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	908241	908390	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	908241	908390	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	908566	908706	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	908566	908706	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	908880	909020	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	908880	909020	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	909213	909431	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	909213	909431	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	909696	909744	0.000000	+	0	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	909696	909744	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	CDS	909822	909952	0.000000	+	2	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	stop_codon	909953	909955	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1"; 
chr1	hg19_ccdsGene	exon	909822	909955	0.000000	+	.	gene_id "CCDS4.1"; transcript_id "CCDS4.1";