diff fml_gff_groomer/t/GFF_2_Source.gff3 @ 0:79726c328621 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 17:29:24 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/GFF_2_Source.gff3	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,34 @@
+##gff-version 3
+1	gencode	gene	11874	14412	.	+	.	ID=Gene:gene:ENSG00000223972;Name=Gene:gene:ENSG00000223972
+1	gencode	mRNA	11874	14412	.	+	.	ID=Transcript:gene:ENSG00000223972.1;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
+1	gencode	five_prime_UTR	11874	12227	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	five_prime_UTR	12613	12721	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	five_prime_UTR	13221	14158	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	CDS	14159	14389	.	+	0	ID=CDS:gene:ENSG00000223972.1;Name=CDS:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	three_prime_UTR	14390	14412	.	+	.	ID=three_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	11874	12227	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	12613	12721	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	13221	14412	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	mRNA	12010	13670	.	+	.	ID=Transcript:gene:ENSG00000223972.2;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
+1	gencode	exon	12010	12057	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12179	12227	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12613	12697	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12975	13052	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	13221	13374	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	13453	13670	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+scaffold_1	JGI_Filtered	gene	47	2523	.	-	.	ID=scaffold_100001.1;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	mRNA	47	2523	.	-	.	ID=Transcript:918720;Name=Transcript:918720;Parent=scaffold_100001.1
+scaffold_1	JGI_Filtered	three_prime_UTR	47	66	.	-	.	ID=three_prime_UTR:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	exon	47	252	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	67	252	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	407	782	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	407	782	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1423	1642	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1423	1642	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1803	2035	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1803	2035	.	-	2	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2124	2347	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2124	2347	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2444	2523	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2444	2503	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	five_prime_UTR	2504	2523	.	-	.	ID=five_prime_UTR:918720;Parent=Transcript:918720