changeset 0:79726c328621 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 17:29:24 -0400
parents
children
files fml_gff_groomer/README fml_gff_groomer/galaxy/gff_available_limits.xml fml_gff_groomer/galaxy/gff_id_mapper.xml fml_gff_groomer/galaxy/gff_loci_merge.xml fml_gff_groomer/scripts/gff_available_limits.py fml_gff_groomer/scripts/gff_id_mapper.py fml_gff_groomer/scripts/gff_loci_merge.py fml_gff_groomer/t/Aly_JGI.gff3 fml_gff_groomer/t/Feature_ID_mapping_R.txt fml_gff_groomer/t/Feature_ID_mapping_W.gff3 fml_gff_groomer/t/Feature_ID_mapping_W.txt fml_gff_groomer/t/GFF_2_Source.gff3 fml_gff_groomer/t/GFF_2_Source_FeatureScan.txt
diffstat 13 files changed, 5097 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/README	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,57 @@
+A set of tools for pre-processing genome annotation in Generic Feature Format (GFF)
+
+INTRODUCTION
+
+Here I am distributing a customized bio-python scripts to give details about the GFF file 
+before you proceed with any analysis work. This programs allow you to get a better understanding 
+about your GFF file and do necessary grooming procedure to make them valid for better use.
+Please follow the instructions below to clone these tools into your galaxy instance.
+
+CONTENTS
+
+galaxy: Contains tool configuration files in *.xml format. 
+
+    Tool configuration files. Please add right path to locate the scripts.
+
+    gff_id_mapper.xml
+
+    gff_available_limits.xml
+
+    gff_loci_merge.xml
+
+
+t: Test data set. (move to your galaxy root folder/test-data/)
+    
+    You may need to move the test files into your test-data directory so galaxy can find them. 
+    If you want to run the functional tests eg as: 
+
+    sh run_functional_tests.sh -id fml_mergeloci
+
+scripts: Python based and Perl based scripts. 
+
+    gff_id_mapper.py : Provides feature to sub feature identifier mapping in a given GFF3 file ()
+
+    gff_available_limits.py : This tool provides an overview of available contig identifiers, sources and feature types and their corresponding counts from a given GFF file.
+
+    gff_loci_merge.py : This tool merge the feature annotation of same loci. MergeLoci will be able to merge several transcripts from single loci to a main feature instead of several features.
+
+REQUIREMENTS
+
+    Python 
+
+COMMENTS/QUESTIONS 
+
+I can be reached at vipin.ts@tuebingen.mpg.de
+
+LICENSE
+
+Copyright (C) 2010 Friedrich Miescher Laboratory of the Max Planck Society
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+COURTESY
+
+To the Galaxy Team.
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/galaxy/gff_available_limits.xml	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,99 @@
+<tool id="gff_available_limits" name="FeatureScan" version="1.0.0">
+  <description>gives an overview about GFF file content</description>
+  <command interpreter="python"> 
+        gff_available_limits.py
+		$gff_input
+		> $overview
+    </command>
+  <inputs>
+    <param format="gff3" name="gff_input" type="data" label="Genome annotation in GFF3 format" help="Genome annotation in GFF3 format describing the known gene structures and other features for the provided genome."/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="overview" label="Feature contents in GFF file" />
+  </outputs>
+    	<tests>
+    		<test>
+            	<param name="gff_input" value="GFF_2_Source.gff3" />
+            	<output name="overview" file="GFF_2_Source_FeatureScan.txt" />
+            </test>
+    	</tests>
+  <help>
+
+**What it does** 
+
+This tool provides an overview of available contig identifiers, sources and feature types and their corresponding counts from a given GFF file.
+
+--------
+
+**Example**
+
+- The features ID mapping in the following data in GFF format::
+
+	##gff-version 3
+	scaffold_1      JGI_Filtered    gene    33131338        33131726        .       -       .       ID=scaffold_105720.1;Name=scaffold_105720.1
+	scaffold_1      JGI_Filtered    mRNA    33131338        33131726        .       -       .       ID=Transcript:924439;Name=Transcript:924439;Parent=scaffold_105720.1
+	scaffold_1      JGI_Filtered    three_prime_UTR 33131338        33131357        .       -       .       ID=three_prime_UTR:924439;Parent=Transcript:924439
+	scaffold_1      JGI_Filtered    exon    33131338        33131654        .       -       .       ID=exon:924439;Parent=Transcript:924439
+	scaffold_1      JGI_Filtered    CDS     33131358        33131654        .       -       0       ID=CDS:924439;Parent=Transcript:924439;Name=scaffold_105720.1
+	scaffold_1      JGI_Filtered    exon    33131703        33131726        .       -       .       ID=exon:924439;Parent=Transcript:924439
+	scaffold_1      JGI_Filtered    CDS     33131703        33131705        .       -       0       ID=CDS:924439;Parent=Transcript:924439;Name=scaffold_105720.1
+	scaffold_1      JGI_Filtered    five_prime_UTR  33131706        33131726        .       -       .       ID=five_prime_UTR:924439;Parent=Transcript:924439
+	Chr4    TAIR9   gene    1180    1536    .       -       .       ID=AT4G00005;Note=protein_coding_gene;Name=AT4G00005
+	Chr4    TAIR9   mRNA    1180    1536    .       -       .       ID=AT4G00005.1;Parent=AT4G00005;Name=AT4G00005.1;Index=1
+	Chr4    TAIR9   protein 1180    1536    .       -       .       ID=AT4G00005.1-Protein;Name=AT4G00005.1;Derives_from=AT4G00005.1
+	Chr4    TAIR9   CDS     1180    1536    .       -       0       Parent=AT4G00005.1,AT4G00005.1-Protein;
+	Chr4    TAIR9   exon    1180    1536    .       -       .       Parent=AT4G00005.1
+
+- Will be displayed as::
+
+	Chromosome identifier(s) and corresponding count:
+		Chr4	5
+		scaffold_1	8
+
+	Source(s) of feature and corresponding count:
+		JGI_Filtered	8
+		TAIR9	5
+
+	Feature type(s) and corresponding count:
+		gene	2
+		mRNA	2
+		five_prime_UTR	1
+		three_prime_UTR	1
+		exon	3
+		CDS	3
+		protein	1
+
+	Unique combination of Feature type(s), Source(s) and corresponding count:
+		JGI_Filtered, CDS       2
+		JGI_Filtered, exon      2
+		JGI_Filtered, five_prime_UTR    1
+		JGI_Filtered, gene      1
+		JGI_Filtered, mRNA      1
+		JGI_Filtered, three_prime_UTR 1
+		TAIR9, CDS      1
+		TAIR9, exon     1
+		TAIR9, protein	1
+		TAIR9, mRNA	1
+		TAIR9, gene	1
+	
+--------
+
+**About formats**
+
+**GFF3 format** General Feature Format is a format for describing genes and other features associated with DNA, RNA and Protein sequences. GFF3 lines have nine tab-separated fields:
+
+    1. seqid - Must be a chromosome or scaffold.
+    2. source - The program that generated this feature.
+    3. type - The name of this type of feature. Some examples of standard feature types are "gene", "CDS", "protein", "mRNA", and "exon". 
+    4. start - The starting position of the feature in the sequence. The first base is numbered 1.
+    5. stop - The ending position of the feature (inclusive).
+    6. score - A score between 0 and 1000. If there is no score value, enter ".".
+    7. strand - Valid entries include '+', '-', or '.' (for don't know/care).
+    8. phase - If the feature is a coding exon, frame should be a number between 0-2 that represents the reading frame of the first base. If the feature is not a coding exon, the value should be '.'.
+    9. attributes - All lines with the same group are linked together into a single item.
+
+--------
+
+This tool is a part of the **MLB Group at Friedrich Miescher Laboratory of the Max Planck Society**. Copyright (C) 2010 Vipin T. Sreedharan (vipin.ts@tuebingen.mpg.de)
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/galaxy/gff_id_mapper.xml	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,75 @@
+<tool id="gff_parent_child_relation" name="Examine" version="1.0.0">
+  <description>Parent-Child relation in GFF file</description>
+  <command interpreter="python"> 
+        gff_id_mapper.py
+		$gff_input
+		> $idmapping
+    </command>
+  <inputs>
+    <param format="gff3" name="gff_input" type="data" label="Genome annotation in GFF3 format" help="Genome annotation in GFF3 format describing the known gene structures and other features for the provided genome."/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="idmapping" label="Parent-child relation in GFF file" />
+  </outputs>
+		<tests>
+    		<test>
+            	<param name="gff_input" value="Feature_ID_mapping_W.gff3" />
+            	<output name="idmapping" file="Feature_ID_mapping_W.txt" />
+            </test>
+    		<test>
+            	<param name="gff_input" value="Aly_JGI.gff3" />
+            	<output name="idmapping" file="Feature_ID_mapping_R.txt" />
+            </test>
+        </tests>
+  <help>
+
+**What it does** 
+
+This tool provides the features(gene, mRNA, UTR's, exon, CDS etc) relationship based on their identifier mapping in a given GFF file.
+
+--------
+
+**Example**
+
+- The features ID mapping in the following data in GFF format::
+
+	##gff-version 3
+	17      protein_coding  gene    7255208 7258258 .       +       .       ID=ENSG00000213859;Name=KCTD11
+	17      protein_coding  mRNA    7255208 7258258 .       +       .       ID=ENST00000333751;Name=KCTD11-001;Parent=ENSG00000213859
+	17      protein_coding  five_prime_UTR  7255208 7256261 .       +       .       Parent=ENST00000333751
+	17      protein_coding  CDS     7256262 7256960 .       +       0       Name=CDS:KCTD11;Parent=ENST00000333751,ENSP00000328352
+	17      protein_coding  three_prime_UTR 7256961 7258258 .       +       .       Parent=ENST00000333751
+	17      protein_coding  exon    7255208 7258258 .       +       .       Parent=ENST00000333751
+
+- Will be displayed as::
+
+	FIRST level feature(s):
+		('protein_coding', 'gene')
+
+	SECOND level feature(s):
+		('protein_coding', 'mRNA')
+	
+	THIRD level feature(s):
+		('protein_coding', 'CDS'), ('protein_coding', 'exon'), ('protein_coding', 'five_prime_UTR'), ('protein_coding', 'three_prime_UTR')
+
+--------
+
+**About formats**
+
+**GFF3 format** General Feature Format is a format for describing genes and other features associated with DNA, RNA and Protein sequences. GFF3 lines have nine tab-separated fields:
+
+1. seqid - Must be a chromosome or scaffold.
+2. source - The program that generated this feature.
+3. type - The name of this type of feature. Some examples of standard feature types are "gene", "CDS", "protein", "mRNA", and "exon". 
+4. start - The starting position of the feature in the sequence. The first base is numbered 1.
+5. stop - The ending position of the feature (inclusive).
+6. score - A score between 0 and 1000. If there is no score value, enter ".".
+7. strand - Valid entries include '+', '-', or '.' (for don't know/care).
+8. phase - If the feature is a coding exon, frame should be a number between 0-2 that represents the reading frame of the first base. If the feature is not a coding exon, the value should be '.'.
+9. attributes - All lines with the same group are linked together into a single item.
+
+--------
+
+This tool is a part of the **MLB Group at Friedrich Miescher Laboratory of the Max Planck Society**. Copyright (C) 2010 Vipin T. Sreedharan (vipin.ts@tuebingen.mpg.de)
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/galaxy/gff_loci_merge.xml	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,114 @@
+<tool id="fml_mergeloci" name="MergeLoci" version="1.0.0">
+  <description>Merge feature annotation from same loci</description>
+  <command interpreter="python"> 
+        gff_loci_merge.py
+		$gff_input
+		$gff_result
+		> $logfile
+    </command>
+  <inputs>
+    <param format="gff3" name="gff_input" type="data" label="Genome annotation in GFF3 format" help="Genome annotation in GFF3 format describing the known gene structures for the provided genome."/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="logfile" label="Log file for MergeLoci" />
+    <data format="gff3" name="gff_result" />
+  </outputs>
+		<tests>
+    		<test>
+            	<param name="gff_input" value="ucsc_splitted_genes.gff3" />
+            	<output name="logfile" file="ucsc_merged_genes_log.txt" />
+            	<output name="gff_result" file="ucsc_merged_genes.gff3" />
+            </test>
+		</tests>
+  <help>
+
+**What it does** 
+
+This tool merge the feature annotation of same loci. MergeLoci will be able to merge several transcripts from single loci to a main feature instead of several features. For example, in UCSC genome annotation files the alternative splice model of the transcript are represented as individual gene models. 
+
+--------
+
+**Example**
+
+- data in GFF3 format::
+
+	##gff-version 3
+	chr19   hg19_knownGene  gene    44764033        44779468        .       +       .       ID=Gene:uc002oyy.1;Name=Gene:uc002oyy.1
+	chr19   hg19_knownGene  mRNA    44764033        44779468        .       +       .       ID=Transcript:uc002oyy.1;Parent=Gene:uc002oyy.1
+	chr19   hg19_knownGene  protein 44777369        44778826        .       +       .       ID=Protein:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44764033        44764091        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44768467        44768528        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS     44777369        44778826        .       +       0       Name=CDS:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  three_prime_UTR 44778827        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44764033        44764091        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44768467        44768528        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777052        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  gene    44770351        44779468        .       +       .       ID=Gene:uc002oyy.1;Name=Gene:uc002oyy.1
+	chr19   hg19_knownGene  mRNA    44770351        44779468        .       +       .       ID=Transcript:uc002oyy.1;Parent=Gene:uc002oyy.1
+	chr19   hg19_knownGene  protein 44777052        44778826        .       +       .       ID=Protein:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS	44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS	44777489        44778826        .       +       0       Name=CDS:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  three_prime_UTR 44778827        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777489        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+
+- Will be merged as::
+
+	##gff-version 3
+	chr19   hg19_knownGene  gene    44764033        44779468        .       +       .       ID=Gene_hg19_chr19_00001;Name=Gene_hg19_chr19_0001
+	chr19   hg19_knownGene  mRNA    44764033        44779468        .       +       .       ID=Transcript:uc002oyy.1;Parent=Gene_hg19_chr19_0001
+	chr19   hg19_knownGene  protein 44777369        44778826        .       +       .       ID=Protein:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44764033        44764091        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44768467        44768528        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS     44777369        44778826        .       +       0       Name=CDS:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  three_prime_UTR 44778827        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44764033        44764091        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44768467        44768528        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777052        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  mRNA    44770351        44779468        .       +       .       ID=Transcript:uc002oyy.1;Gene_hg19_chr19_0001
+	chr19   hg19_knownGene  protein 44777052        44778826        .       +       .       ID=Protein:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  five_prime_UTR  44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS	44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  CDS	44777489        44778826        .       +       0       Name=CDS:uc002oyy.1;Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  three_prime_UTR 44778827        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44770351        44770477        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44771019        44771297        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777052        44777368        .       +       .       Parent=Transcript:uc002oyy.1
+	chr19   hg19_knownGene  exon    44777489        44779468        .       +       .       Parent=Transcript:uc002oyy.1
+
+--------
+
+**About formats**
+
+**GFF3 format** General Feature Format is a format for describing genes and other features associated with DNA, RNA and Protein sequences. GFF3 lines have nine tab-separated fields:
+
+    1. seqid - Must be a chromosome or scaffold.
+    2. source - The program that generated this feature.
+    3. type - The name of this type of feature. Some examples of standard feature types are "gene", "CDS", "protein", "mRNA", and "exon". 
+    4. start - The starting position of the feature in the sequence. The first base is numbered 1.
+    5. stop - The ending position of the feature (inclusive).
+    6. score - A score between 0 and 1000. If there is no score value, enter ".".
+    7. strand - Valid entries include '+', '-', or '.' (for don't know/care).
+    8. phase - If the feature is a coding exon, frame should be a number between 0-2 that represents the reading frame of the first base. If the feature is not a coding exon, the value should be '.'.
+    9. attributes - All lines with the same group are linked together into a single item.
+
+--------
+
+This tool is a part of the **MLB Group at Friedrich Miescher Laboratory of the Max Planck Society**. Copyright (C) 2010 Vipin T. Sreedharan (vipin.ts@tuebingen.mpg.de)
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/scripts/gff_available_limits.py	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,79 @@
+#!/usr/bin/env python
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# Written (W) 2010 Vipin T Sreedharan, Friedrich Miescher Laboratory of the Max Planck Society
+# Copyright (C) 2010 Max Planck Society
+#
+# Description : Provide available source, feature types from a GFF file 
+
+import re, sys
+import time 
+import collections
+
+def available_limits(gff_handle):
+    """Figure out the available feature types from the given GFF file"""
+
+    filter_info = dict(gff_id = [0], gff_source_type = [1, 2],
+                gff_source = [1], gff_type = [2])
+    cur_limits = dict()
+    for filter_key in filter_info.keys():
+        cur_limits[filter_key] = collections.defaultdict(int)
+    for line in gff_handle:
+        if line.strip('\n\r')[0] != "#":
+            parts = [p.strip() for p in line.split('\t')]
+            if len(parts) == 1 and re.search(r'\w+', parts[0]):continue ## GFF files with FASTA sequence together 
+            assert len(parts) == 9, line
+            for filter_key, cur_indexes in filter_info.items():
+                cur_id = tuple([parts[i] for i in cur_indexes])
+                cur_limits[filter_key][cur_id] += 1
+    # get rid of the default dicts
+    final_dict = dict()
+    for key, value_dict in cur_limits.items():
+        if len(key) == 1:
+            key = key[0]
+        final_dict[key] = dict(value_dict)
+   
+    return final_dict
+
+if __name__=='__main__':
+    
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'FeatureScan started on ' + stime
+    print '-------------------------------------------------------'
+
+    try:
+        gff_handle = open(sys.argv[1], 'rU')
+    except:
+        sys.stderr.write("Can't open the GFF3 file, terminating...\n")
+        sys.stderr.write("USAGE: gff_available_limits.py <gff file>\n")
+        sys.exit(-1)
+    final_dict = available_limits(gff_handle)
+    gff_handle.close()
+    print 
+    print "==Overview of available source(s) and feature type(s) from GFF file=="
+    print 
+    print "Chromosome identifier(s) and corresponding count:"
+    for contig, cnt in sorted(final_dict['gff_id'].items()):
+        print '\t' + str(contig[0]) + '\t' + str(cnt)
+    print
+    print "Source(s) of feature and corresponding count:"
+    for source, cnt in sorted(final_dict['gff_source'].items()):
+        print '\t' + str(source[0]) + '\t' + str(cnt)
+    print
+    print "Feature type(s) and corresponding count:"
+    for ftype, cnt in sorted(final_dict['gff_type'].items()):
+        print '\t' + str(cnt) + '\t' + str(ftype[0]) 
+    print
+    print "Unique combination of Feature type(s), Source(s) and corresponding count:"
+    for sftype, cnt in sorted(final_dict['gff_source_type'].items()):
+        print '\t' + str(cnt) + '\t' + str(sftype[0]) + ', '+ str(sftype[1])
+    print
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'FeatureScan finished at ' + stime
+    print '-------------------------------------------------------'
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/scripts/gff_id_mapper.py	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,254 @@
+#!/usr/bin/env python
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# Written (W) 2010 Vipin T Sreedharan, Friedrich Miescher Laboratory of the Max Planck Society
+# Copyright (C) 2010 Max Planck Society
+#
+
+# Description : Provides feature to sub feature identifier mapping in a given GFF3 file.
+
+import re, sys 
+import collections
+import urllib
+import time 
+
+def _gff_line_map(line):
+    """Parses a line of GFF into a dictionary.
+    Given an input line from a GFF file, this:
+        - breaks it into component elements
+        - determines the type of attribute (flat, parent, child or annotation)
+        - generates a dictionary of GFF info 
+    """
+    gff3_kw_pat = re.compile("\w+=")
+    def _split_keyvals(keyval_str):
+        """Split key-value pairs in a GFF2, GTF and GFF3 compatible way.
+
+        GFF3 has key value pairs like:
+          count=9;gene=amx-2;sequence=SAGE:aacggagccg
+        GFF2 and GTF have:           
+          Sequence "Y74C9A" ; Note "Clone Y74C9A; Genbank AC024206"
+          name "fgenesh1_pg.C_chr_1000003"; transcriptId 869
+        """
+        quals = collections.defaultdict(list)
+        if keyval_str is None:
+            return quals
+        # ensembl GTF has a stray semi-colon at the end
+        if keyval_str[-1] == ';':
+            keyval_str = keyval_str[:-1]
+        # GFF2/GTF has a semi-colon with at least one space after it.
+        # It can have spaces on both sides; wormbase does this.
+        # GFF3 works with no spaces.
+        # Split at the first one we can recognize as working
+        parts = keyval_str.split(" ; ")
+        if len(parts) == 1:
+            parts = keyval_str.split("; ")
+            if len(parts) == 1:
+                parts = keyval_str.split(";")
+        # check if we have GFF3 style key-vals (with =)
+        is_gff2 = True
+        if gff3_kw_pat.match(parts[0]):
+            is_gff2 = False
+            key_vals = [p.split('=') for p in parts]
+        # otherwise, we are separated by a space with a key as the first item
+        else:
+            pieces = []
+            for p in parts:
+                # fix misplaced semi-colons in keys in some GFF2 files
+                if p and p[0] == ';':
+                    p = p[1:]
+                pieces.append(p.strip().split(" "))
+            key_vals = [(p[0], " ".join(p[1:])) for p in pieces]
+        for key, val in key_vals:
+            # remove quotes in GFF2 files
+            if (len(val) > 0 and val[0] == '"' and val[-1] == '"'):
+                val = val[1:-1] 
+            if val:
+                quals[key].extend(val.split(','))
+            # if we don't have a value, make this a key=True/False style
+            # attribute
+            else:
+                quals[key].append('true')
+        for key, vals in quals.items():
+            quals[key] = [urllib.unquote(v) for v in vals]
+        return quals, is_gff2
+
+    def _nest_gff2_features(gff_parts):
+        """Provide nesting of GFF2 transcript parts with transcript IDs.
+
+        exons and coding sequences are mapped to a parent with a transcript_id
+        in GFF2. This is implemented differently at different genome centers
+        and this function attempts to resolve that and map things to the GFF3
+        way of doing them.
+        """
+        # map protein or transcript ids to a parent
+        for transcript_id in ["transcript_id", "transcriptId", "proteinId"]:
+            try:
+                gff_parts["quals"]["Parent"] = \
+                        gff_parts["quals"][transcript_id]
+                break
+            except KeyError:
+                pass
+        # case for WormBase GFF -- everything labelled as Transcript or CDS
+        for flat_name in ["Transcript", "CDS"]:
+            if gff_parts["quals"].has_key(flat_name):
+                # parent types
+                if gff_parts["type"] in [flat_name]:
+                    if not gff_parts["id"]:
+                        gff_parts["id"] = gff_parts["quals"][flat_name][0]
+                        gff_parts["quals"]["ID"] = [gff_parts["id"]]
+                # children types
+                elif gff_parts["type"] in ["intron", "exon", "three_prime_UTR",
+                        "coding_exon", "five_prime_UTR", "CDS", "stop_codon",
+                        "start_codon"]:
+                    gff_parts["quals"]["Parent"] = gff_parts["quals"][flat_name]
+                break
+
+        return gff_parts
+
+    line = line.strip()
+    if line == '':return [('directive', line)] # sometimes the blank lines will be there 
+    if line[0] == '>':return [('directive', '')] # sometimes it will be a FATSA header
+    if line[0] == "#":
+        return [('directive', line[2:])]
+    elif line:
+        parts = line.split('\t')
+        if len(parts) == 1 and re.search(r'\w+', parts[0]):return [('directive', '')] ## GFF files with FASTA sequence together 
+        assert len(parts) == 9, line
+        gff_parts = [(None if p == '.' else p) for p in parts]
+        gff_info = dict()
+            
+        # collect all of the base qualifiers for this item
+        quals, is_gff2 = _split_keyvals(gff_parts[8])
+
+        gff_info["is_gff2"] = is_gff2
+
+        if gff_parts[1]:quals["source"].append(gff_parts[1])
+        gff_info['quals'] = dict(quals)
+
+        # if we are describing a location, then we are a feature
+        if gff_parts[3] and gff_parts[4]:
+            gff_info['type'] = gff_parts[2]
+            gff_info['id'] = quals.get('ID', [''])[0]
+            
+            if is_gff2:gff_info = _nest_gff2_features(gff_info)
+            # features that have parents need to link so we can pick up
+            # the relationship
+            if gff_info['quals'].has_key('Parent'):
+                final_key = 'child'
+            elif gff_info['id']:
+                final_key = 'parent'
+            # Handle flat features
+            else:
+                final_key = 'feature'
+        # otherwise, associate these annotations with the full record
+        else:
+            final_key = 'annotation'
+        return [(final_key, gff_info)]
+    
+def parent_child_id_map(gff_handle):
+    """Provide a mapping of parent to child relationships in the file.
+
+    Gives a dictionary of parent child relationships:
+
+    keys -- tuple of (source, type) for each parent
+    values -- tuple of (source, type) as children of that parent"""
+
+    # collect all of the parent and child types mapped to IDs
+    parent_sts = dict()
+    child_sts = collections.defaultdict(list)
+
+    for line in gff_handle:
+        line_type, line_info = _gff_line_map(line)[0]
+        if (line_type == 'parent' or (line_type == 'child' and line_info['id'])):
+            parent_sts[line_info['id']] = (line_info['quals']['source'][0], line_info['type'])
+        if line_type == 'child':
+            for parent_id in line_info['quals']['Parent']:
+                child_sts[parent_id].append((line_info['quals']['source'][0], line_info['type']))
+    gff_handle.close()
+     
+    # generate a dictionary of the unique final type relationships
+    pc_map = collections.defaultdict(list)
+    for parent_id, parent_type in parent_sts.items():
+        for child_type in child_sts[parent_id]:
+            pc_map[parent_type].append(child_type)
+    pc_final_map = dict()
+    for ptype, ctypes in pc_map.items():
+        unique_ctypes = list(set(ctypes))
+        unique_ctypes.sort()
+        pc_final_map[ptype] = unique_ctypes
+
+    # Check for Parent Child relations
+    level1, level2, level3, sec_level_mis = {}, {}, {}, {}
+    for etype, fchild in pc_final_map.items():
+        level2_flag = 0
+        for kp, vp in pc_final_map.items():
+            if etype in vp:level2_flag = 1; level2[etype] = 1 # check for second level features
+        if level2_flag == 0: # first level features
+            level1[etype] =1 
+            for eachfch in fchild: # perform a check for all level1 objects values were defined as level2 keys.  
+                if not eachfch in pc_final_map.keys(): # figure out the missing level2 objects  
+                    if etype in sec_level_mis:
+                        sec_level_mis[etype].append(eachfch)
+                    else:
+                        sec_level_mis[etype]=[eachfch]
+        if level2_flag == 1:level3[str(fchild)] =1  # taking third level features 
+    # disply the result 
+    if level1==level2==level3=={} and sec_level_mis == {}:
+        print
+        print 'ONLY FIRST level feature(s):'
+        source_type = dict()
+        gff_handle = open(gff_handle.name, 'rU')
+        for line in gff_handle:
+            line = line.strip('\n\r')
+            if line[0] == '#': continue
+            parts = line.split('\t')
+            if parts[-1] == '':parts.pop()
+            assert len(parts) == 9, line
+            source_type[(parts[1], parts[2])] = 1
+        gff_handle.close()
+        for ele in source_type:print '\t' + str(ele)
+        print
+    else:
+        print
+        print '===Report on different level features from GFF file==='
+        print
+        print 'FIRST level feature(s):'
+        for ele in level1: print '\t' + str(ele)
+        print 
+        print 'SECOND level feature(s):'
+        for ele in level2: print '\t' + str(ele)
+        print 
+        print 'THIRD level feature(s):'
+        for ele in level3:print '\t' + str(ele[1:-1])
+        print
+        # wrong way mapped feature mapping description 
+        for wf, wfv in sec_level_mis.items():
+            if wf[1]=='gene':
+                print 'GFF Parsing modules from publicly available packages like Bio-python, Bio-perl etc. are heavily dependent on feature identifier mapping.' 
+                print 'Here few features seems to be wrongly mapped to its child, which inturn cause problems while extracting the annotation based on feature identifier.\n'
+                for ehv in wfv:
+                    if ehv[1]=='exon' or ehv[1]=='intron' or ehv[1]=='CDS' or ehv[1]=='three_prime_UTR' or ehv[1]=='five_prime_UTR':print 'Error in ID mapping: Level1 feature ' + str(wf) + ' maps to Level3 feature ' + str(ehv)
+
+if __name__=='__main__':
+    
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'GFFExamine started on ' + stime
+    print '-------------------------------------------------------'
+
+    try:
+        gff_handle = open(sys.argv[1], 'rU')
+    except:
+        sys.stderr.write("Can't open the GFF3 file, Cannot continue...\n")
+        sys.stderr.write("USAGE: gff_id_mapper.py <gff3 file> \n")
+        sys.exit(-1)
+    parent_child_id_map(gff_handle)
+    
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'GFFExamine finished at ' + stime
+    print '-------------------------------------------------------'
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/scripts/gff_loci_merge.py	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,300 @@
+#!/usr/bin/env python
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# Written (W) 2010 Vipin T Sreedharan, Friedrich Miescher Laboratory of the Max Planck Society
+# Copyright (C) 2010 Friedrich Miescher Laboratory of the Max Planck Society
+#
+# Description : to merge same transcripts in single loci and define as an alternative spliced form for the gene.
+
+def display_content(final_dict):
+    """displaying the summary from GFF file"""
+
+    print "\tUnique combination of Source(s), Feature type(s) and corresponding count:"
+    for sftype, cnt in sorted(final_dict['gff_source_type'].items()):
+        if sftype[1] == 'gene':print '\t' + str(cnt) + '\t' + str(sftype[0]) + ', '+ str(sftype[1])
+
+def available_limits(gff_file):
+    """Figure out the available feature types from the given GFF file"""
+    
+    gff_handle = open(gff_file, 'rU')
+    filter_info = dict(gff_id = [0], gff_source_type = [1, 2],
+                gff_source = [1], gff_type = [2])
+    cur_limits = dict()
+    for filter_key in filter_info.keys():
+        cur_limits[filter_key] = collections.defaultdict(int)
+    for line in gff_handle:
+        if line.strip('\n\r')[0] != "#":
+            parts = [p.strip() for p in line.split('\t')]
+            if len(parts) == 1 and re.search(r'\w+', parts[0]):continue ## GFF files with FASTA sequence together 
+            assert len(parts) == 9, line
+            for filter_key, cur_indexes in filter_info.items():
+                cur_id = tuple([parts[i] for i in cur_indexes])
+                cur_limits[filter_key][cur_id] += 1
+    # get rid of the default dicts
+    gff_handle.close()
+    final_dict = dict()
+    for key, value_dict in cur_limits.items():
+        if len(key) == 1:key = key[0]
+        final_dict[key] = dict(value_dict)
+    return final_dict
+
+def GFFWriter(merged_info, genes, transcripts, exons, utr5, cds, utr3, out_file):
+    """Write GFF3 file with merged feature description"""
+    
+    out_fh = open(out_file, 'w')
+    for ginfo, regions in merged_info.items():
+        gene_cnt = 1
+        for interval, features in sorted(regions.items()):# master gene feature
+            out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\tgene\t' + str(interval[0]) + '\t' + str(interval[1]) + '\t.\t' + ginfo[2] + '\t.\tID=Gene_' + ginfo[0] + '_' + str(gene_cnt).zfill(5) + ';Name=Gene_' + ginfo[0] + '_' + str(gene_cnt).zfill(5) + '\n')
+            for geneid in features:# corresponding transcript info 
+                if geneid in transcripts:
+                    for tinfo in transcripts[geneid]:# transcript feature line 
+                        out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\t' + tinfo['type'] + '\t' + str(tinfo['start']) + '\t' + str(tinfo['stop']) + '\t.\t' + ginfo[2] + '\t.\tID=' + tinfo['ID']+ ';Parent=Gene_' + ginfo[0] + '_' + str(gene_cnt).zfill(5) + '\n')
+                        if tinfo['ID'] in utr5:# check for 5 prime UTR 
+                            for u5info in utr5[tinfo['ID']]:out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\tfive_prime_UTR\t' + str(u5info['start']) + '\t' + str(u5info['stop']) + '\t.\t' + ginfo[2] + '\t.\tParent=' + tinfo['ID'] + '\n')
+                        if tinfo['ID'] in cds:# check for CDS 
+                            for cdsinfo in cds[tinfo['ID']]:out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\tCDS\t' + str(cdsinfo['start']) + '\t' + str(cdsinfo['stop']) + '\t.\t' + ginfo[2] + '\t.\tParent=' + tinfo['ID'] + '\n')
+                        if tinfo['ID'] in utr3:# check for 3 prime UTR
+                            for u3info in utr3[tinfo['ID']]:out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\tthree_prime_UTR\t' + str(u3info['start']) + '\t' + str(u3info['stop']) + '\t.\t' + ginfo[2] + '\t.\tParent=' + tinfo['ID'] + '\n')
+                        if tinfo['ID'] in exons:# check for exons
+                            for exinfo in exons[tinfo['ID']]:out_fh.write(ginfo[0] + '\t' + ginfo[1] + '\texon\t' + str(exinfo['start']) + '\t' + str(exinfo['stop']) + '\t.\t' + ginfo[2] + '\t.\tParent=' + tinfo['ID'] + '\n')
+            gene_cnt += 1
+    out_fh.close()
+
+def UniqLoci(genes, transcripts, exons):
+    """determine unique location where features annotated multiple times"""
+
+    uniq_loci = dict()
+    for gid, parts in genes.items():
+        gene_info = (parts['chr'], parts['source'], parts['strand'])
+        if gene_info in uniq_loci:## same contig, orientation, source: look for merging transcripts based on the nearby location
+            if (int(parts['start']), int(parts['stop'])) in uniq_loci[gene_info].keys(): ## similar transcripts will catch here (start and stop are same may be exon, CDS or intron content may vary) 
+                uniq_loci[gene_info][(int(parts['start']), int(parts['stop']))].append(gid)
+            else: # heuristic approach to include closely related region on a single master loci.
+                got_a_range = 0
+                for floc in uniq_loci[gene_info].keys():# look whether it lies closely to any intervel which is already defined  
+                    if (floc[1]-parts['start']) < 150 or (parts['stop']-floc[0]) < 150:continue ## TODO boundary spanning length in same orientation for genes of each species will be great.
+                    if floc[0] <= parts['start'] and parts['start'] < floc[1]: # the start of the new candidate is inside of any of the already defined interval ?
+                        non_coding = 0
+                        try: # check for small transcript whether they belong to a existing one or a new non-coding candidate.  
+                            if len(transcripts[gid]) == 1: 
+                                if len(exons[transcripts[gid][0]['ID']]) == 1:non_coding = 1
+                            if non_coding == 0:
+                                if parts['stop'] > floc[1]:# making global gene coordinate from individual transcript model
+                                    entries = uniq_loci[gene_info][floc]
+                                    del uniq_loci[gene_info][floc] # remove the existing interval, here we got a longer downstream position from the candidate
+                                    entries.append(gid)
+                                    uniq_loci[gene_info][(floc[0], parts['stop'])] = entries
+                                else:
+                                    uniq_loci[gene_info][floc].append(gid)
+                            else:# create a new interval for non-coding type entry 
+                                uniq_loci[gene_info][(parts['start'], parts['stop'])] = [gid] 
+                            got_a_range = 1
+                            break
+                        except: # dont have any transcripts or exons defined.
+                            break
+                    elif floc[0] < parts['stop'] and parts['stop'] <= floc[1]: # the stop of the new candidate is inside of any of the pre-defined interval ? the candidate seems to be from more upstream
+                        non_coding = 0
+                        try:
+                            if len(transcripts[gid]) == 1: 
+                                if len(exons[transcripts[gid][0]['ID']]) == 1:non_coding = 1
+                            if non_coding == 0:
+                                entries = uniq_loci[gene_info][floc]
+                                del uniq_loci[gene_info][floc] # remove the existing interval, here we got a upstream position from which the candidate transcribing 
+                                entries.append(gid)
+                                uniq_loci[gene_info][(int(parts['start']), floc[1])] = entries
+                            else: # create a new interval for non-coding type entry 
+                                uniq_loci[gene_info][(parts['start'], parts['stop'])] = [gid] 
+                            got_a_range = 1
+                            break
+                        except:
+                            break
+                    elif floc[0] > parts['start'] and floc[1] < parts['stop']: # whether the whole feature floc region (--) resides in the candidate location (----------) ? 
+                        non_coding = 0 # here the candidate seems to be longer than the pre-defined interval, check all entries from the pre-defined interval whether it is a small region, any chance as non-coding.
+                        try:
+                            for features in uniq_loci[gene_info][floc]:
+                                if len(transcripts[features]) == 1:
+                                    if len(exons[transcripts[features][0]['ID']]) == 1:non_coding = 1
+                            if non_coding == 1: # create a new interval for non coding 
+                                uniq_loci[gene_info][(parts['start'], parts['stop'])] = [gid]
+                            else: # append the existing transcript cluster, here change the interval position based on the candidate location 
+                                entries = uniq_loci[gene_info][floc]
+                                del uniq_loci[gene_info][floc] # remove the existing interval, here we got a longer upstream and downstream region.
+                                entries.append(gid)
+                                uniq_loci[gene_info][(parts['start'], parts['stop'])] = entries
+                            got_a_range = 1
+                            break
+                        except:
+                            break
+                ## or create a new interval ?? 
+                if got_a_range == 0:uniq_loci[gene_info][(parts['start'], parts['stop'])] = [gid]
+        else:
+            uniq_loci[gene_info] = {(int(parts['start']), int(parts['stop'])): [gid]}
+
+    return uniq_loci
+
+def ParseGFF(gff_file):
+    """feature extraction from provided GFF file"""
+
+    gff_handle = open(gff_file, 'rU')
+    genes, transcripts, exons, utr5, cds, utr3 = dict(), dict(), dict(), dict(), dict(), dict()
+    for gff_line in gff_handle:
+        parts = gff_line.strip('\n\r').split('\t')
+        if gff_line[0] == '#' or gff_line[0] == '>':continue
+        if len(parts) == 1:continue ## Some centers in the world create GFF files with FASTA sequence together 
+        if len(parts) != 9:sys.stdout.write('Warning: Found invalid GFF line\n' + gff_line.strip('\n\r') + '\n');continue
+        if parts[3] == '' or parts[4] == '':sys.stdout.write('Warning: Found missing coordinate in GFF line\n' + gff_line.strip('\n\r') + '\n');continue
+        if parts[2] == 'gene':
+            gene_info = dict()
+            gene_info['start'] = int(parts[3])
+            gene_info['stop'] = int(parts[4])
+            gene_info['chr'] = parts[0]
+            gene_info['source'] = parts[1]
+            gene_info['strand'] = parts[6]
+            gid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue ## GFF line may end with a ';' symbol
+                attr = attr.split('=')
+                if attr[0] == 'ID':gid=attr[1];continue 
+                gene_info[attr[0]] = attr[1]
+            if gid != '': genes[gid] = gene_info
+        if parts[2] == 'mRNA' or parts[2] == 'transcript' or parts[2] == 'ncRNA' or parts[2] == 'tRNA' or parts[2] == 'snRNA' or parts[2] == 'scRNA' or parts[2] == 'snoRNA' or parts[2] == 'snlRNA' or parts[2] == 'rRNA' or parts[2] == 'miRNA':
+            mrna_info = dict() 
+            mrna_info['start'] = int(parts[3])
+            mrna_info['stop'] = int(parts[4])
+            mrna_info['chr'] =  parts[0]
+            mrna_info['strand'] = parts[6]
+            mrna_info['type'] = parts[2]
+            gid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue ## GFF line may end with a ';' symbol
+                attr = attr.split('=')
+                if attr[0] == 'Parent':gid=attr[1];continue
+                mrna_info[attr[0]] = attr[1]
+            if gid in transcripts:
+                transcripts[gid].append(mrna_info)
+            else:
+                transcripts[gid] = [mrna_info]
+        if parts[2] == 'exon':
+            exon_info = dict()
+            exon_info['start'] = int(parts[3])
+            exon_info['stop'] = int(parts[4])
+            exon_info['chr'] =  parts[0]
+            exon_info['strand'] = parts[6]
+            tid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue ## GFF line may end with a ';' symbol
+                attr = attr.split('=')
+                if attr[0] == 'Parent':tid=attr[1];continue
+                exon_info[attr[0]] = attr[1]
+            if tid in exons:
+                exons[tid].append(exon_info)
+            else:
+                exons[tid] = [exon_info]
+        if parts[2] == 'five_prime_UTR':
+            utr5_info = dict()
+            utr5_info['start'] = int(parts[3])
+            utr5_info['stop'] = int(parts[4])
+            utr5_info['chr'] =  parts[0]
+            utr5_info['strand'] = parts[6]
+            tid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue ## GFF line may end with a ';' symbol
+                attr = attr.split('=')
+                if attr[0] == 'Parent':tid=attr[1];continue
+                utr5_info[attr[0]] = attr[1]
+            if tid in utr5:
+                utr5[tid].append(utr5_info)
+            else:
+                utr5[tid] = [utr5_info]
+        if parts[2] == 'CDS':
+            cds_info = dict()
+            cds_info['start'] = int(parts[3])
+            cds_info['stop'] = int(parts[4])
+            cds_info['chr'] =  parts[0]
+            cds_info['strand'] = parts[6]
+            tid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue
+                attr = attr.split('=')
+                if attr[0] == 'Parent':tid=attr[1];continue
+                cds_info[attr[0]] = attr[1]
+            if tid in cds:
+                cds[tid].append(cds_info)
+            else:
+                cds[tid] = [cds_info]
+        if parts[2] == 'three_prime_UTR':
+            utr3_info = dict()
+            utr3_info['start'] = int(parts[3])
+            utr3_info['stop'] = int(parts[4])
+            utr3_info['chr'] =  parts[0]
+            utr3_info['strand'] = parts[6]
+            tid = ''
+            for attr in parts[-1].split(';'):
+                if attr == '':continue
+                attr = attr.split('=')
+                if attr[0] == 'Parent':tid=attr[1];continue
+                utr3_info[attr[0]] = attr[1]
+            if tid in utr3:
+                utr3[tid].append(utr3_info)
+            else:
+                utr3[tid] = [utr3_info]
+    gff_handle.close()
+    return genes, transcripts, exons, utr5, cds, utr3
+
+import re, sys 
+import time 
+import collections
+
+if __name__=='__main__':
+    
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'MergeLoci started on ' + stime
+    print '-------------------------------------------------------'
+    try:
+        gff_file = sys.argv[1]
+        out_file = sys.argv[2]
+    except:
+        sys.stderr.write("Missing GFF3 file, result file. terminating...\n")
+        sys.stderr.write("USAGE: gff_loci_merge.py <gff file> <result file>\n")
+        sys.exit(-1)
+    print '--------'
+    print 'Level: 1- ' + 'Reading GFF file: ' + re.sub(r'/home/galaxy/galaxy-2.1.2009', r'GALAXYDIR', gff_file)
+    print '--------'
+    print '--------'
+    print 'Level: 2- ' + 'BEFORE processing, Merging feature distribution in GFF file'
+    print '--------'
+    # initial feature distribution in file
+    final_dict = available_limits(gff_file)
+    display_content(final_dict)
+    # determine the whole content from GFF file 
+    genes, transcripts, exons, utr5, cds, utr3 = ParseGFF(gff_file)
+    print '--------'
+    print 'Level: 3- ' + 'Start merging feature(s) from similar locations...'
+    print '--------'
+    # determine the same gene loci on specific chromosome based on the same source
+    merged_regions = UniqLoci(genes, transcripts, exons)
+    print '\tDone.'
+    print '--------'
+    print 'Level: 4- ' + 'Writing merged feature annotation to GFF format...' 
+    print '--------'
+    # write new GFF file with merged loci information for gene feature
+    GFFWriter(merged_regions, genes, transcripts, exons, utr5, cds, utr3, out_file)
+    print '\tDone.'
+    # after processing display the feature distribution in the result file 
+    print '--------'
+    print 'Level: 5- ' + 'Merged feature(s) summary from GFF file' 
+    print '--------'
+    final_dict = available_limits(out_file)
+    display_content(final_dict)
+	print 
+    print '\tMerged result file: ' + re.sub(r'/home/galaxy/galaxy-2.1.2009', r'GALAXYDIR', out_file)
+    stime = time.asctime( time.localtime(time.time()) )
+    print '-------------------------------------------------------'
+    print 'MergeLoci finished at ' + stime
+    print '-------------------------------------------------------'
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/Aly_JGI.gff3	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,3996 @@
+##gff-version 3
+##sequence-region scaffold_1 1 33132539
+scaffold_1	Genomic_canonical	region	1	33132539	.	+	.	ID=scaffold_1;Name=scaffold_1
+scaffold_1	JGI_Filtered	gene	47	2523	.	-	.	ID=scaffold_100001.1;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	mRNA	47	2523	.	-	.	ID=Transcript:918720;Name=Transcript:918720;Parent=scaffold_100001.1
+scaffold_1	JGI_Filtered	three_prime_UTR	47	66	.	-	.	ID=three_prime_UTR:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	exon	47	252	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	67	252	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	407	782	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	407	782	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1423	1642	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1423	1642	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1803	2035	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1803	2035	.	-	2	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2124	2347	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2124	2347	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2444	2523	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2444	2503	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	five_prime_UTR	2504	2523	.	-	.	ID=five_prime_UTR:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	gene	3311	6198	.	-	.	ID=fgenesh2_kg.1__2__AT1G02190.2;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	mRNA	3311	6198	.	-	.	ID=Transcript:470048;Name=Transcript:470048;Parent=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	three_prime_UTR	3311	3490	.	-	.	ID=three_prime_UTR:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	three_prime_UTR	3513	3528	.	-	.	ID=three_prime_UTR:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	exon	3311	3490	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	exon	3513	3708	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	3529	3708	.	-	0	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	3810	4082	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	3810	4082	.	-	0	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	4164	4364	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	4164	4364	.	-	0	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	4483	4590	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	4483	4590	.	-	0	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	4730	4736	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	4730	4736	.	-	0	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	4851	5228	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	4851	5228	.	-	1	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	5319	5538	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	5319	5538	.	-	1	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	exon	5631	6198	.	-	.	ID=exon:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	CDS	5631	6123	.	-	2	ID=CDS:470048;Parent=Transcript:470048;Name=fgenesh2_kg.1__2__AT1G02190.2
+scaffold_1	JGI_Filtered	five_prime_UTR	6124	6198	.	-	.	ID=five_prime_UTR:470048;Parent=Transcript:470048
+scaffold_1	JGI_Filtered	gene	7429	7630	.	+	.	ID=scaffold_100003.1;Name=scaffold_100003.1
+scaffold_1	JGI_Filtered	mRNA	7429	7630	.	+	.	ID=Transcript:918722;Name=Transcript:918722;Parent=scaffold_100003.1
+scaffold_1	JGI_Filtered	five_prime_UTR	7429	7448	.	+	.	ID=five_prime_UTR:918722;Parent=Transcript:918722
+scaffold_1	JGI_Filtered	exon	7429	7630	.	+	.	ID=exon:918722;Parent=Transcript:918722
+scaffold_1	JGI_Filtered	CDS	7449	7610	.	+	0	ID=CDS:918722;Parent=Transcript:918722;Name=scaffold_100003.1
+scaffold_1	JGI_Filtered	three_prime_UTR	7611	7630	.	+	.	ID=three_prime_UTR:918722;Parent=Transcript:918722
+scaffold_1	JGI_Filtered	gene	9512	10567	.	+	.	ID=fgenesh2_kg.1__3__AT1G02180.1;Name=fgenesh2_kg.1__3__AT1G02180.1
+scaffold_1	JGI_Filtered	mRNA	9512	10567	.	+	.	ID=Transcript:470049;Name=Transcript:470049;Parent=fgenesh2_kg.1__3__AT1G02180.1
+scaffold_1	JGI_Filtered	five_prime_UTR	9512	9564	.	+	.	ID=five_prime_UTR:470049;Parent=Transcript:470049
+scaffold_1	JGI_Filtered	exon	9512	9564	.	+	.	ID=exon:470049;Parent=Transcript:470049
+scaffold_1	JGI_Filtered	exon	9576	9657	.	+	.	ID=exon:470049;Parent=Transcript:470049
+scaffold_1	JGI_Filtered	CDS	9576	9657	.	+	0	ID=CDS:470049;Parent=Transcript:470049;Name=fgenesh2_kg.1__3__AT1G02180.1
+scaffold_1	JGI_Filtered	exon	9873	10567	.	+	.	ID=exon:470049;Parent=Transcript:470049
+scaffold_1	JGI_Filtered	CDS	9873	10471	.	+	1	ID=CDS:470049;Parent=Transcript:470049;Name=fgenesh2_kg.1__3__AT1G02180.1
+scaffold_1	JGI_Filtered	three_prime_UTR	10472	10567	.	+	.	ID=three_prime_UTR:470049;Parent=Transcript:470049
+scaffold_1	JGI_Filtered	gene	10652	11944	.	-	.	ID=Al_scaffold_0001_4;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	mRNA	10652	11944	.	-	.	ID=Transcript:909750;Name=Transcript:909750;Parent=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	exon	10652	10711	.	-	.	ID=exon:909750;Parent=Transcript:909750
+scaffold_1	JGI_Filtered	CDS	10652	10711	.	-	0	ID=CDS:909750;Parent=Transcript:909750;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	exon	10782	11006	.	-	.	ID=exon:909750;Parent=Transcript:909750
+scaffold_1	JGI_Filtered	CDS	10782	11006	.	-	0	ID=CDS:909750;Parent=Transcript:909750;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	exon	11044	11202	.	-	.	ID=exon:909750;Parent=Transcript:909750
+scaffold_1	JGI_Filtered	CDS	11044	11202	.	-	0	ID=CDS:909750;Parent=Transcript:909750;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	exon	11260	11619	.	-	.	ID=exon:909750;Parent=Transcript:909750
+scaffold_1	JGI_Filtered	CDS	11260	11619	.	-	0	ID=CDS:909750;Parent=Transcript:909750;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	exon	11813	11944	.	-	.	ID=exon:909750;Parent=Transcript:909750
+scaffold_1	JGI_Filtered	CDS	11813	11944	.	-	0	ID=CDS:909750;Parent=Transcript:909750;Name=Al_scaffold_0001_4
+scaffold_1	JGI_Filtered	gene	12552	13416	.	-	.	ID=fgenesh2_kg.1__5__AT1G02160.2;Name=fgenesh2_kg.1__5__AT1G02160.2
+scaffold_1	JGI_Filtered	mRNA	12552	13416	.	-	.	ID=Transcript:470051;Name=Transcript:470051;Parent=fgenesh2_kg.1__5__AT1G02160.2
+scaffold_1	JGI_Filtered	three_prime_UTR	12552	12738	.	-	.	ID=three_prime_UTR:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	exon	12552	12843	.	-	.	ID=exon:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	CDS	12739	12843	.	-	0	ID=CDS:470051;Parent=Transcript:470051;Name=fgenesh2_kg.1__5__AT1G02160.2
+scaffold_1	JGI_Filtered	exon	12873	12949	.	-	.	ID=exon:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	CDS	12873	12949	.	-	0	ID=CDS:470051;Parent=Transcript:470051;Name=fgenesh2_kg.1__5__AT1G02160.2
+scaffold_1	JGI_Filtered	exon	13267	13382	.	-	.	ID=exon:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	CDS	13267	13357	.	-	2	ID=CDS:470051;Parent=Transcript:470051;Name=fgenesh2_kg.1__5__AT1G02160.2
+scaffold_1	JGI_Filtered	exon	13395	13416	.	-	.	ID=exon:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	five_prime_UTR	13358	13382	.	-	.	ID=five_prime_UTR:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	five_prime_UTR	13395	13416	.	-	.	ID=five_prime_UTR:470051;Parent=Transcript:470051
+scaffold_1	JGI_Filtered	gene	13702	15386	.	-	.	ID=scaffold_100007.1;Name=scaffold_100007.1
+scaffold_1	JGI_Filtered	mRNA	13702	15386	.	-	.	ID=Transcript:918726;Name=Transcript:918726;Parent=scaffold_100007.1
+scaffold_1	JGI_Filtered	three_prime_UTR	13702	13721	.	-	.	ID=three_prime_UTR:918726;Parent=Transcript:918726
+scaffold_1	JGI_Filtered	exon	13702	14936	.	-	.	ID=exon:918726;Parent=Transcript:918726
+scaffold_1	JGI_Filtered	CDS	13722	14936	.	-	0	ID=CDS:918726;Parent=Transcript:918726;Name=scaffold_100007.1
+scaffold_1	JGI_Filtered	exon	15007	15386	.	-	.	ID=exon:918726;Parent=Transcript:918726
+scaffold_1	JGI_Filtered	CDS	15007	15363	.	-	0	ID=CDS:918726;Parent=Transcript:918726;Name=scaffold_100007.1
+scaffold_1	JGI_Filtered	five_prime_UTR	15364	15386	.	-	.	ID=five_prime_UTR:918726;Parent=Transcript:918726
+scaffold_1	JGI_Filtered	gene	15665	19464	.	-	.	ID=scaffold_100008.1;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	mRNA	15665	19464	.	-	.	ID=Transcript:918727;Name=Transcript:918727;Parent=scaffold_100008.1
+scaffold_1	JGI_Filtered	three_prime_UTR	15665	15762	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	15841	15934	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	16032	16097	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	16343	16442	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	16652	16734	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	16813	16881	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	17048	17115	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	17206	17292	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	17403	17474	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	17676	17779	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	17884	17947	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	18062	18133	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	three_prime_UTR	18246	18304	.	-	.	ID=three_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	exon	15665	15762	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	exon	15841	15934	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	15841	15934	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	16032	16097	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	16032	16097	.	-	1	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	16343	16442	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	16343	16442	.	-	1	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	16652	16734	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	16652	16734	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	16813	16881	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	16813	16881	.	-	1	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	17048	17115	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	17048	17115	.	-	1	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	17206	17292	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	17206	17292	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	17403	17474	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	17403	17474	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	17676	17779	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	17676	17779	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	17884	17947	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	17884	17947	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	18062	18133	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	18062	18133	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	18246	18304	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	18246	18304	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	18425	18542	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	18425	18542	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	CDS	18425	15762	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	18687	18742	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	18687	18742	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	18847	18933	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	18847	18933	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	19010	19055	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	19010	19055	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	19143	19184	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	19143	19184	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	19254	19339	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	19254	19339	.	-	0	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	exon	19419	19464	.	-	.	ID=exon:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	CDS	19419	19443	.	-	2	ID=CDS:918727;Parent=Transcript:918727;Name=scaffold_100008.1
+scaffold_1	JGI_Filtered	five_prime_UTR	19444	19464	.	-	.	ID=five_prime_UTR:918727;Parent=Transcript:918727
+scaffold_1	JGI_Filtered	gene	19692	20609	.	+	.	ID=scaffold_100009.1;Name=scaffold_100009.1
+scaffold_1	JGI_Filtered	mRNA	19692	20609	.	+	.	ID=Transcript:918728;Name=Transcript:918728;Parent=scaffold_100009.1
+scaffold_1	JGI_Filtered	five_prime_UTR	19692	19713	.	+	.	ID=five_prime_UTR:918728;Parent=Transcript:918728
+scaffold_1	JGI_Filtered	exon	19692	19929	.	+	.	ID=exon:918728;Parent=Transcript:918728
+scaffold_1	JGI_Filtered	CDS	19714	19929	.	+	0	ID=CDS:918728;Parent=Transcript:918728;Name=scaffold_100009.1
+scaffold_1	JGI_Filtered	exon	20214	20390	.	+	.	ID=exon:918728;Parent=Transcript:918728
+scaffold_1	JGI_Filtered	CDS	20214	20390	.	+	0	ID=CDS:918728;Parent=Transcript:918728;Name=scaffold_100009.1
+scaffold_1	JGI_Filtered	exon	20530	20609	.	+	.	ID=exon:918728;Parent=Transcript:918728
+scaffold_1	JGI_Filtered	CDS	20530	20589	.	+	0	ID=CDS:918728;Parent=Transcript:918728;Name=scaffold_100009.1
+scaffold_1	JGI_Filtered	three_prime_UTR	20590	20609	.	+	.	ID=three_prime_UTR:918728;Parent=Transcript:918728
+scaffold_1	JGI_Filtered	gene	24515	27497	.	+	.	ID=scaffold_100010.1;Name=scaffold_100010.1
+scaffold_1	JGI_Filtered	mRNA	24515	27497	.	+	.	ID=Transcript:918729;Name=Transcript:918729;Parent=scaffold_100010.1
+scaffold_1	JGI_Filtered	five_prime_UTR	24515	24534	.	+	.	ID=five_prime_UTR:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	exon	24515	24573	.	+	.	ID=exon:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	CDS	24535	24573	.	+	0	ID=CDS:918729;Parent=Transcript:918729;Name=scaffold_100010.1
+scaffold_1	JGI_Filtered	exon	25305	25373	.	+	.	ID=exon:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	CDS	25305	25373	.	+	0	ID=CDS:918729;Parent=Transcript:918729;Name=scaffold_100010.1
+scaffold_1	JGI_Filtered	exon	25525	25626	.	+	.	ID=exon:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	CDS	25525	25626	.	+	0	ID=CDS:918729;Parent=Transcript:918729;Name=scaffold_100010.1
+scaffold_1	JGI_Filtered	exon	27337	27497	.	+	.	ID=exon:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	CDS	27337	27477	.	+	0	ID=CDS:918729;Parent=Transcript:918729;Name=scaffold_100010.1
+scaffold_1	JGI_Filtered	three_prime_UTR	27478	27497	.	+	.	ID=three_prime_UTR:918729;Parent=Transcript:918729
+scaffold_1	JGI_Filtered	gene	29681	31614	.	+	.	ID=fgenesh1_pm.C_scaffold_1000009;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	mRNA	29681	31614	.	+	.	ID=Transcript:311229;Name=Transcript:311229;Parent=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	29681	29746	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	29681	29746	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	29864	29938	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	29864	29938	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	30016	30117	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	30016	30117	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	30232	30274	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	30232	30274	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	30444	30448	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	30444	30448	.	+	1	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	30605	30685	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	30605	30685	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	30775	30870	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	30775	30870	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	31131	31241	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	31131	31241	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	31325	31407	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	31325	31407	.	+	0	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	exon	31488	31614	.	+	.	ID=exon:311229;Parent=Transcript:311229
+scaffold_1	JGI_Filtered	CDS	31488	31614	.	+	2	ID=CDS:311229;Parent=Transcript:311229;Name=fgenesh1_pm.C_scaffold_1000009
+scaffold_1	JGI_Filtered	gene	33055	34772	.	+	.	ID=scaffold_100013.1;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	mRNA	33055	34772	.	+	.	ID=Transcript:918732;Name=Transcript:918732;Parent=scaffold_100013.1
+scaffold_1	JGI_Filtered	five_prime_UTR	33055	33079	.	+	.	ID=five_prime_UTR:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	exon	33055	33093	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33080	33093	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	33218	33290	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33218	33290	.	+	2	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	33385	33432	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33385	33432	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	33510	33557	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33510	33557	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	33769	33840	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33769	33840	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	33930	34085	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	33930	34085	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	34198	34301	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	34198	34301	.	+	0	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	exon	34656	34772	.	+	.	ID=exon:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	CDS	34656	34752	.	+	2	ID=CDS:918732;Parent=Transcript:918732;Name=scaffold_100013.1
+scaffold_1	JGI_Filtered	three_prime_UTR	34753	34772	.	+	.	ID=three_prime_UTR:918732;Parent=Transcript:918732
+scaffold_1	JGI_Filtered	gene	35461	39593	.	-	.	ID=fgenesh2_kg.1__12__AT1G02120.1;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	mRNA	35461	39593	.	-	.	ID=Transcript:470058;Name=Transcript:470058;Parent=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	three_prime_UTR	35461	35846	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	three_prime_UTR	35937	36148	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	three_prime_UTR	36221	36263	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	three_prime_UTR	36365	36426	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	three_prime_UTR	36616	36715	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	three_prime_UTR	36804	36870	.	-	.	ID=three_prime_UTR:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	exon	35461	35846	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	exon	35937	36148	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	35937	36148	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	36221	36263	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	36221	36263	.	-	2	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	36365	36426	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	36365	36426	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	36616	36715	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	36616	36715	.	-	2	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	36804	36870	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	36804	36870	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	36984	37038	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	36984	37038	.	-	1	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	CDS	36984	35846	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	37128	37214	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	37128	37214	.	-	2	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	37325	37412	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	37325	37412	.	-	2	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	37548	37588	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	37548	37588	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	38196	38353	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	38196	38353	.	-	2	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	38431	38501	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	38431	38501	.	-	1	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	38608	38724	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	38608	38724	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	38807	38902	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	38807	38902	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	38984	39049	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	38984	39049	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	39134	39184	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	39134	39184	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	39266	39325	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	39266	39325	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	exon	39408	39593	.	-	.	ID=exon:470058;Parent=Transcript:470058
+scaffold_1	JGI_Filtered	CDS	39408	39593	.	-	0	ID=CDS:470058;Parent=Transcript:470058;Name=fgenesh2_kg.1__12__AT1G02120.1
+scaffold_1	JGI_Filtered	gene	39949	42531	.	-	.	ID=fgenesh2_kg.1__13__AT1G02110.1;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	mRNA	39949	42531	.	-	.	ID=Transcript:470059;Name=Transcript:470059;Parent=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	three_prime_UTR	39949	39962	.	-	.	ID=three_prime_UTR:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	exon	39949	40725	.	-	.	ID=exon:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	CDS	39963	40725	.	-	0	ID=CDS:470059;Parent=Transcript:470059;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	exon	41017	41098	.	-	.	ID=exon:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	CDS	41017	41098	.	-	1	ID=CDS:470059;Parent=Transcript:470059;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	exon	41171	41240	.	-	.	ID=exon:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	CDS	41171	41240	.	-	2	ID=CDS:470059;Parent=Transcript:470059;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	exon	41321	41508	.	-	.	ID=exon:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	CDS	41321	41508	.	-	0	ID=CDS:470059;Parent=Transcript:470059;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	exon	41607	42531	.	-	.	ID=exon:470059;Parent=Transcript:470059
+scaffold_1	JGI_Filtered	CDS	41607	42531	.	-	2	ID=CDS:470059;Parent=Transcript:470059;Name=fgenesh2_kg.1__13__AT1G02110.1
+scaffold_1	JGI_Filtered	gene	43130	46178	.	-	.	ID=scaffold_100016.1;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	mRNA	43130	46178	.	-	.	ID=Transcript:918735;Name=Transcript:918735;Parent=scaffold_100016.1
+scaffold_1	JGI_Filtered	three_prime_UTR	43130	43149	.	-	.	ID=three_prime_UTR:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	exon	43130	43227	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	43150	43227	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	43362	43400	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	43362	43400	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	43624	43675	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	43624	43675	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	43934	43998	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	43934	43998	.	-	1	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	44429	44512	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	44429	44512	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	44710	44757	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	44710	44757	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	44863	44983	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	44863	44983	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	45138	45240	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	45138	45240	.	-	1	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	45424	45505	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	45424	45505	.	-	2	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	45588	45635	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	45588	45635	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	45716	45843	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	45716	45843	.	-	0	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	45912	46000	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	45912	46000	.	-	2	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	exon	46090	46178	.	-	.	ID=exon:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	CDS	46090	46157	.	-	1	ID=CDS:918735;Parent=Transcript:918735;Name=scaffold_100016.1
+scaffold_1	JGI_Filtered	five_prime_UTR	46158	46178	.	-	.	ID=five_prime_UTR:918735;Parent=Transcript:918735
+scaffold_1	JGI_Filtered	gene	46396	48761	.	+	.	ID=fgenesh2_kg.1__19__AT1G02090.1;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	mRNA	46396	48761	.	+	.	ID=Transcript:470065;Name=Transcript:470065;Parent=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	five_prime_UTR	46396	46400	.	+	.	ID=five_prime_UTR:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	exon	46396	46559	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	46401	46559	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	46693	46768	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	46693	46768	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	46850	46938	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	46850	46938	.	+	1	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	47037	47126	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	47037	47126	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	47246	47290	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	47246	47290	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	47387	47456	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	47387	47456	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	47663	47802	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	47663	47802	.	+	1	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	48405	48493	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	48405	48493	.	+	0	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	exon	48590	48761	.	+	.	ID=exon:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	CDS	48590	48614	.	+	2	ID=CDS:470065;Parent=Transcript:470065;Name=fgenesh2_kg.1__19__AT1G02090.1
+scaffold_1	JGI_Filtered	three_prime_UTR	48615	48761	.	+	.	ID=three_prime_UTR:470065;Parent=Transcript:470065
+scaffold_1	JGI_Filtered	gene	48875	49123	.	+	.	ID=Al_scaffold_0001_16;Name=Al_scaffold_0001_16
+scaffold_1	JGI_Filtered	mRNA	48875	49123	.	+	.	ID=Transcript:909762;Name=Transcript:909762;Parent=Al_scaffold_0001_16
+scaffold_1	JGI_Filtered	exon	48875	49123	.	+	.	ID=exon:909762;Parent=Transcript:909762
+scaffold_1	JGI_Filtered	CDS	48875	49123	.	+	0	ID=CDS:909762;Parent=Transcript:909762;Name=Al_scaffold_0001_16
+scaffold_1	JGI_Filtered	gene	49553	51020	.	-	.	ID=scaffold_100018.1;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	mRNA	49553	51020	.	-	.	ID=Transcript:918737;Name=Transcript:918737;Parent=scaffold_100018.1
+scaffold_1	JGI_Filtered	three_prime_UTR	49553	49573	.	-	.	ID=three_prime_UTR:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	exon	49553	49927	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	49574	49927	.	-	0	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	exon	50024	50113	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	50024	50113	.	-	0	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	exon	50214	50296	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	50214	50296	.	-	0	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	exon	50385	50478	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	50385	50478	.	-	2	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	exon	50556	50678	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	50556	50678	.	-	0	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	exon	50755	51020	.	-	.	ID=exon:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	CDS	50755	51000	.	-	0	ID=CDS:918737;Parent=Transcript:918737;Name=scaffold_100018.1
+scaffold_1	JGI_Filtered	five_prime_UTR	51001	51020	.	-	.	ID=five_prime_UTR:918737;Parent=Transcript:918737
+scaffold_1	JGI_Filtered	gene	51526	52636	.	-	.	ID=fgenesh1_pm.C_scaffold_1000016;Name=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	mRNA	51526	52636	.	-	.	ID=Transcript:311236;Name=Transcript:311236;Parent=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	exon	51526	51831	.	-	.	ID=exon:311236;Parent=Transcript:311236
+scaffold_1	JGI_Filtered	CDS	51526	51831	.	-	0	ID=CDS:311236;Parent=Transcript:311236;Name=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	exon	51872	52100	.	-	.	ID=exon:311236;Parent=Transcript:311236
+scaffold_1	JGI_Filtered	CDS	51872	52100	.	-	0	ID=CDS:311236;Parent=Transcript:311236;Name=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	exon	52133	52449	.	-	.	ID=exon:311236;Parent=Transcript:311236
+scaffold_1	JGI_Filtered	CDS	52133	52449	.	-	1	ID=CDS:311236;Parent=Transcript:311236;Name=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	exon	52484	52636	.	-	.	ID=exon:311236;Parent=Transcript:311236
+scaffold_1	JGI_Filtered	CDS	52484	52636	.	-	0	ID=CDS:311236;Parent=Transcript:311236;Name=fgenesh1_pm.C_scaffold_1000016
+scaffold_1	JGI_Filtered	gene	55814	56468	.	-	.	ID=fgenesh2_kg.1__20__AT1G02070.1;Name=fgenesh2_kg.1__20__AT1G02070.1
+scaffold_1	JGI_Filtered	mRNA	55814	56468	.	-	.	ID=Transcript:470066;Name=Transcript:470066;Parent=fgenesh2_kg.1__20__AT1G02070.1
+scaffold_1	JGI_Filtered	three_prime_UTR	55814	55884	.	-	.	ID=three_prime_UTR:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	three_prime_UTR	55899	55972	.	-	.	ID=three_prime_UTR:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	exon	55814	55884	.	-	.	ID=exon:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	exon	55899	56282	.	-	.	ID=exon:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	CDS	55973	56282	.	-	0	ID=CDS:470066;Parent=Transcript:470066;Name=fgenesh2_kg.1__20__AT1G02070.1
+scaffold_1	JGI_Filtered	exon	56377	56468	.	-	.	ID=exon:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	CDS	56377	56465	.	-	1	ID=CDS:470066;Parent=Transcript:470066;Name=fgenesh2_kg.1__20__AT1G02070.1
+scaffold_1	JGI_Filtered	five_prime_UTR	56466	56468	.	-	.	ID=five_prime_UTR:470066;Parent=Transcript:470066
+scaffold_1	JGI_Filtered	gene	57579	57871	.	+	.	ID=scaffold_100022.1;Name=scaffold_100022.1
+scaffold_1	JGI_Filtered	mRNA	57579	57871	.	+	.	ID=Transcript:918741;Name=Transcript:918741;Parent=scaffold_100022.1
+scaffold_1	JGI_Filtered	five_prime_UTR	57579	57598	.	+	.	ID=five_prime_UTR:918741;Parent=Transcript:918741
+scaffold_1	JGI_Filtered	exon	57579	57871	.	+	.	ID=exon:918741;Parent=Transcript:918741
+scaffold_1	JGI_Filtered	CDS	57599	57850	.	+	0	ID=CDS:918741;Parent=Transcript:918741;Name=scaffold_100022.1
+scaffold_1	JGI_Filtered	three_prime_UTR	57851	57871	.	+	.	ID=three_prime_UTR:918741;Parent=Transcript:918741
+scaffold_1	JGI_Filtered	gene	58865	72177	.	+	.	ID=scaffold_100023.1;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	mRNA	58865	72177	.	+	.	ID=Transcript:918742;Name=Transcript:918742;Parent=scaffold_100023.1
+scaffold_1	JGI_Filtered	five_prime_UTR	58865	58884	.	+	.	ID=five_prime_UTR:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	exon	58865	58977	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	58885	58977	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	59074	59371	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	59074	59371	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	59449	59677	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	59449	59677	.	+	1	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	59769	60108	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	59769	60108	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	60300	60413	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	60300	60413	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	60500	60628	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	60500	60628	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	60703	60894	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	60703	60894	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	60984	61178	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	60984	61178	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	61307	61444	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	61307	61444	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	61536	61658	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	61536	61658	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	61742	61995	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	61742	61995	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	62097	62200	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	62097	62200	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	62436	62530	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	62436	62530	.	+	1	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	62618	62842	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	62618	62842	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	63182	63343	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	63182	63343	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	63428	63500	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	63428	63500	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	63611	63678	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	63611	63678	.	+	1	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	63814	63959	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	63814	63959	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	64070	64178	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	64070	64178	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	64271	64417	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	64271	64417	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	64509	64556	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	64509	64556	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	64631	64759	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	64631	64759	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	64881	65123	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	64881	65123	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	65239	65376	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	65239	65376	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	65462	65547	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	65462	65547	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	65643	65748	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	65643	65748	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	65992	66087	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	65992	66087	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	66245	66397	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	66245	66397	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	66552	66734	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	66552	66734	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	66810	67039	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	66810	67039	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	67135	67237	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	67135	67237	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	67321	67446	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	67321	67446	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	67532	67576	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	67532	67576	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	67751	67945	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	67751	67945	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	68204	68330	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	68204	68330	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	68433	68533	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	68433	68533	.	+	1	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	68829	68963	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	68829	68963	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	69040	69123	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	69040	69123	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	69540	69686	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	69540	69686	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	69775	69906	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	69775	69906	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	70016	70063	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	70016	70063	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	70158	70304	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	70158	70304	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	70372	70433	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	70372	70433	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	70632	70785	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	70632	70785	.	+	2	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	70890	71081	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	70890	71081	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	71171	71275	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	71171	71275	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	71368	71502	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	71368	71502	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	71591	71791	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	71591	71791	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	exon	71898	72177	.	+	.	ID=exon:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	CDS	71898	72152	.	+	0	ID=CDS:918742;Parent=Transcript:918742;Name=scaffold_100023.1
+scaffold_1	JGI_Filtered	three_prime_UTR	72153	72177	.	+	.	ID=three_prime_UTR:918742;Parent=Transcript:918742
+scaffold_1	JGI_Filtered	gene	72255	72617	.	-	.	ID=Al_scaffold_0001_21;Name=Al_scaffold_0001_21
+scaffold_1	JGI_Filtered	mRNA	72255	72617	.	-	.	ID=Transcript:909767;Name=Transcript:909767;Parent=Al_scaffold_0001_21
+scaffold_1	JGI_Filtered	exon	72255	72291	.	-	.	ID=exon:909767;Parent=Transcript:909767
+scaffold_1	JGI_Filtered	CDS	72255	72291	.	-	0	ID=CDS:909767;Parent=Transcript:909767;Name=Al_scaffold_0001_21
+scaffold_1	JGI_Filtered	exon	72378	72433	.	-	.	ID=exon:909767;Parent=Transcript:909767
+scaffold_1	JGI_Filtered	CDS	72378	72433	.	-	1	ID=CDS:909767;Parent=Transcript:909767;Name=Al_scaffold_0001_21
+scaffold_1	JGI_Filtered	exon	72507	72617	.	-	.	ID=exon:909767;Parent=Transcript:909767
+scaffold_1	JGI_Filtered	CDS	72507	72617	.	-	0	ID=CDS:909767;Parent=Transcript:909767;Name=Al_scaffold_0001_21
+scaffold_1	JGI_Filtered	gene	74785	76652	.	-	.	ID=fgenesh2_kg.1__23__AT1G02065.1;Name=fgenesh2_kg.1__23__AT1G02065.1
+scaffold_1	JGI_Filtered	mRNA	74785	76652	.	-	.	ID=Transcript:470069;Name=Transcript:470069;Parent=fgenesh2_kg.1__23__AT1G02065.1
+scaffold_1	JGI_Filtered	three_prime_UTR	74785	74825	.	-	.	ID=three_prime_UTR:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	exon	74785	74825	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	exon	74871	75031	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	CDS	74871	75031	.	-	0	ID=CDS:470069;Parent=Transcript:470069;Name=fgenesh2_kg.1__23__AT1G02065.1
+scaffold_1	JGI_Filtered	exon	75135	75265	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	CDS	75135	75265	.	-	2	ID=CDS:470069;Parent=Transcript:470069;Name=fgenesh2_kg.1__23__AT1G02065.1
+scaffold_1	JGI_Filtered	exon	75579	76311	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	CDS	75579	76258	.	-	1	ID=CDS:470069;Parent=Transcript:470069;Name=fgenesh2_kg.1__23__AT1G02065.1
+scaffold_1	JGI_Filtered	exon	76324	76433	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	exon	76452	76571	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	exon	76594	76652	.	-	.	ID=exon:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	five_prime_UTR	76259	76311	.	-	.	ID=five_prime_UTR:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	five_prime_UTR	76324	76433	.	-	.	ID=five_prime_UTR:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	five_prime_UTR	76452	76571	.	-	.	ID=five_prime_UTR:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	five_prime_UTR	76594	76652	.	-	.	ID=five_prime_UTR:470069;Parent=Transcript:470069
+scaffold_1	JGI_Filtered	gene	78367	80505	.	+	.	ID=fgenesh1_pm.C_scaffold_1000020;Name=fgenesh1_pm.C_scaffold_1000020
+scaffold_1	JGI_Filtered	mRNA	78367	80505	.	+	.	ID=Transcript:311240;Name=Transcript:311240;Parent=fgenesh1_pm.C_scaffold_1000020
+scaffold_1	JGI_Filtered	exon	78367	80505	.	+	.	ID=exon:311240;Parent=Transcript:311240
+scaffold_1	JGI_Filtered	CDS	78367	80505	.	+	0	ID=CDS:311240;Parent=Transcript:311240;Name=fgenesh1_pm.C_scaffold_1000020
+scaffold_1	JGI_Filtered	gene	80941	82330	.	+	.	ID=fgenesh2_kg.1__25__AT1G02050.1;Name=fgenesh2_kg.1__25__AT1G02050.1
+scaffold_1	JGI_Filtered	mRNA	80941	82330	.	+	.	ID=Transcript:470071;Name=Transcript:470071;Parent=fgenesh2_kg.1__25__AT1G02050.1
+scaffold_1	JGI_Filtered	five_prime_UTR	80941	81015	.	+	.	ID=five_prime_UTR:470071;Parent=Transcript:470071
+scaffold_1	JGI_Filtered	exon	80941	81217	.	+	.	ID=exon:470071;Parent=Transcript:470071
+scaffold_1	JGI_Filtered	CDS	81016	81217	.	+	0	ID=CDS:470071;Parent=Transcript:470071;Name=fgenesh2_kg.1__25__AT1G02050.1
+scaffold_1	JGI_Filtered	exon	81317	82330	.	+	.	ID=exon:470071;Parent=Transcript:470071
+scaffold_1	JGI_Filtered	CDS	81317	82305	.	+	1	ID=CDS:470071;Parent=Transcript:470071;Name=fgenesh2_kg.1__25__AT1G02050.1
+scaffold_1	JGI_Filtered	three_prime_UTR	82306	82330	.	+	.	ID=three_prime_UTR:470071;Parent=Transcript:470071
+scaffold_1	JGI_Filtered	gene	82573	83367	.	+	.	ID=fgenesh1_pg.C_scaffold_1000018;Name=fgenesh1_pg.C_scaffold_1000018
+scaffold_1	JGI_Filtered	mRNA	82573	83367	.	+	.	ID=Transcript:333453;Name=Transcript:333453;Parent=fgenesh1_pg.C_scaffold_1000018
+scaffold_1	JGI_Filtered	exon	82573	83367	.	+	.	ID=exon:333453;Parent=Transcript:333453
+scaffold_1	JGI_Filtered	CDS	82573	83367	.	+	0	ID=CDS:333453;Parent=Transcript:333453;Name=fgenesh1_pg.C_scaffold_1000018
+scaffold_1	JGI_Filtered	gene	87206	90301	.	+	.	ID=fgenesh1_pg.C_scaffold_1000020;Name=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	mRNA	87206	90301	.	+	.	ID=Transcript:333455;Name=Transcript:333455;Parent=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	exon	87206	87946	.	+	.	ID=exon:333455;Parent=Transcript:333455
+scaffold_1	JGI_Filtered	CDS	87206	87946	.	+	0	ID=CDS:333455;Parent=Transcript:333455;Name=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	exon	88009	88037	.	+	.	ID=exon:333455;Parent=Transcript:333455
+scaffold_1	JGI_Filtered	CDS	88009	88037	.	+	0	ID=CDS:333455;Parent=Transcript:333455;Name=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	exon	88380	89907	.	+	.	ID=exon:333455;Parent=Transcript:333455
+scaffold_1	JGI_Filtered	CDS	88380	89907	.	+	2	ID=CDS:333455;Parent=Transcript:333455;Name=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	exon	89981	90301	.	+	.	ID=exon:333455;Parent=Transcript:333455
+scaffold_1	JGI_Filtered	CDS	89981	90301	.	+	0	ID=CDS:333455;Parent=Transcript:333455;Name=fgenesh1_pg.C_scaffold_1000020
+scaffold_1	JGI_Filtered	gene	90714	113497	.	-	.	ID=fgenesh2_kg.1__28__AT1G02010.1;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	mRNA	90714	113497	.	-	.	ID=Transcript:470074;Name=Transcript:470074;Parent=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	three_prime_UTR	90714	90999	.	-	.	ID=three_prime_UTR:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	exon	90714	91071	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	91000	91071	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	109532	109621	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	109532	109621	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	109715	109805	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	109715	109805	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	109926	110122	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	109926	110122	.	-	1	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	110210	110287	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	110210	110287	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	110379	110495	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	110379	110495	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	110574	110669	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	110574	110669	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	110756	110881	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	110756	110881	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	110971	111067	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	110971	111067	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	111250	111320	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	111250	111320	.	-	1	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	111398	111496	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	111398	111496	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	111570	111653	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	111570	111653	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	111736	111906	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	111736	111906	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112096	112224	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112096	112224	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112365	112397	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112365	112397	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112490	112586	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112490	112586	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112661	112711	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112661	112711	.	-	1	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112808	112886	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112808	112886	.	-	1	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	112997	113078	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	112997	113078	.	-	2	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	113155	113210	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	113155	113210	.	-	0	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	113317	113406	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	CDS	113317	113392	.	-	2	ID=CDS:470074;Parent=Transcript:470074;Name=fgenesh2_kg.1__28__AT1G02010.1
+scaffold_1	JGI_Filtered	exon	113423	113497	.	-	.	ID=exon:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	five_prime_UTR	113393	113406	.	-	.	ID=five_prime_UTR:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	five_prime_UTR	113423	113497	.	-	.	ID=five_prime_UTR:470074;Parent=Transcript:470074
+scaffold_1	JGI_Filtered	gene	113969	115315	.	-	.	ID=scaffold_100037.1;Name=scaffold_100037.1
+scaffold_1	JGI_Filtered	mRNA	113969	115315	.	-	.	ID=Transcript:918756;Name=Transcript:918756;Parent=scaffold_100037.1
+scaffold_1	JGI_Filtered	three_prime_UTR	113969	113990	.	-	.	ID=three_prime_UTR:918756;Parent=Transcript:918756
+scaffold_1	JGI_Filtered	exon	113969	115315	.	-	.	ID=exon:918756;Parent=Transcript:918756
+scaffold_1	JGI_Filtered	CDS	113991	115295	.	-	0	ID=CDS:918756;Parent=Transcript:918756;Name=scaffold_100037.1
+scaffold_1	JGI_Filtered	five_prime_UTR	115296	115315	.	-	.	ID=five_prime_UTR:918756;Parent=Transcript:918756
+scaffold_1	JGI_Filtered	gene	118008	119066	.	+	.	ID=fgenesh2_kg.1__29__AT1G01990.1;Name=fgenesh2_kg.1__29__AT1G01990.1
+scaffold_1	JGI_Filtered	mRNA	118008	119066	.	+	.	ID=Transcript:470075;Name=Transcript:470075;Parent=fgenesh2_kg.1__29__AT1G01990.1
+scaffold_1	JGI_Filtered	five_prime_UTR	118008	118056	.	+	.	ID=five_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	five_prime_UTR	118074	118076	.	+	.	ID=five_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	exon	118008	118056	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	exon	118074	118805	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	CDS	118077	118805	.	+	0	ID=CDS:470075;Parent=Transcript:470075;Name=fgenesh2_kg.1__29__AT1G01990.1
+scaffold_1	JGI_Filtered	exon	118827	118883	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	exon	118907	118950	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	exon	118968	119023	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	exon	119038	119066	.	+	.	ID=exon:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	three_prime_UTR	118827	118883	.	+	.	ID=three_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	three_prime_UTR	118907	118950	.	+	.	ID=three_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	three_prime_UTR	118968	119023	.	+	.	ID=three_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	three_prime_UTR	119038	119066	.	+	.	ID=three_prime_UTR:470075;Parent=Transcript:470075
+scaffold_1	JGI_Filtered	gene	122468	124310	.	+	.	ID=fgenesh2_kg.1__30__AT1G01980.1;Name=fgenesh2_kg.1__30__AT1G01980.1
+scaffold_1	JGI_Filtered	mRNA	122468	124310	.	+	.	ID=Transcript:470076;Name=Transcript:470076;Parent=fgenesh2_kg.1__30__AT1G01980.1
+scaffold_1	JGI_Filtered	exon	122468	124093	.	+	.	ID=exon:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	CDS	122468	124093	.	+	0	ID=CDS:470076;Parent=Transcript:470076;Name=fgenesh2_kg.1__30__AT1G01980.1
+scaffold_1	JGI_Filtered	exon	124121	124204	.	+	.	ID=exon:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	exon	124217	124220	.	+	.	ID=exon:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	exon	124232	124310	.	+	.	ID=exon:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	three_prime_UTR	124121	124204	.	+	.	ID=three_prime_UTR:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	three_prime_UTR	124217	124220	.	+	.	ID=three_prime_UTR:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	three_prime_UTR	124232	124310	.	+	.	ID=three_prime_UTR:470076;Parent=Transcript:470076
+scaffold_1	JGI_Filtered	gene	124594	126229	.	-	.	ID=fgenesh2_kg.1__31__AT1G01970.1;Name=fgenesh2_kg.1__31__AT1G01970.1
+scaffold_1	JGI_Filtered	mRNA	124594	126229	.	-	.	ID=Transcript:470077;Name=Transcript:470077;Parent=fgenesh2_kg.1__31__AT1G01970.1
+scaffold_1	JGI_Filtered	three_prime_UTR	124594	124605	.	-	.	ID=three_prime_UTR:470077;Parent=Transcript:470077
+scaffold_1	JGI_Filtered	exon	124594	125385	.	-	.	ID=exon:470077;Parent=Transcript:470077
+scaffold_1	JGI_Filtered	CDS	124606	125385	.	-	0	ID=CDS:470077;Parent=Transcript:470077;Name=fgenesh2_kg.1__31__AT1G01970.1
+scaffold_1	JGI_Filtered	exon	125530	126229	.	-	.	ID=exon:470077;Parent=Transcript:470077
+scaffold_1	JGI_Filtered	CDS	125530	125979	.	-	0	ID=CDS:470077;Parent=Transcript:470077;Name=fgenesh2_kg.1__31__AT1G01970.1
+scaffold_1	JGI_Filtered	five_prime_UTR	125980	126229	.	-	.	ID=five_prime_UTR:470077;Parent=Transcript:470077
+scaffold_1	JGI_Filtered	gene	127652	134697	.	+	.	ID=fgenesh2_kg.1__32__AT1G01960.1;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	mRNA	127652	134697	.	+	.	ID=Transcript:470078;Name=Transcript:470078;Parent=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	127652	128817	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	127652	128817	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	129023	129340	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	129023	129340	.	+	2	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	129526	129880	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	129526	129880	.	+	2	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	129970	130392	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	129970	130392	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	130515	130807	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	130515	130807	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	131095	131368	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	131095	131368	.	+	2	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	131695	132194	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	131695	132194	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	132279	132600	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	132279	132600	.	+	2	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	132680	133037	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	132680	133037	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	133129	133778	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	133129	133778	.	+	1	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	exon	133873	134697	.	+	.	ID=exon:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	CDS	133873	134466	.	+	0	ID=CDS:470078;Parent=Transcript:470078;Name=fgenesh2_kg.1__32__AT1G01960.1
+scaffold_1	JGI_Filtered	three_prime_UTR	134467	134697	.	+	.	ID=three_prime_UTR:470078;Parent=Transcript:470078
+scaffold_1	JGI_Filtered	gene	134679	139817	.	-	.	ID=fgenesh2_kg.1__33__AT1G01950.1;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	mRNA	134679	139817	.	-	.	ID=Transcript:470079;Name=Transcript:470079;Parent=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	three_prime_UTR	134679	134697	.	-	.	ID=three_prime_UTR:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	three_prime_UTR	134721	134913	.	-	.	ID=three_prime_UTR:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	exon	134679	134697	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	exon	134721	135074	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	134914	135074	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	135153	135281	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	135153	135281	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	135380	135523	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	135380	135523	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	135601	135726	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	135601	135726	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	135865	135990	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	135865	135990	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	136089	136181	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	136089	136181	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	136270	136402	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	136270	136402	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	136747	136878	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	136747	136878	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	136979	137113	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	136979	137113	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	137195	137302	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	137195	137302	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	137433	137636	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	137433	137636	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	137724	137812	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	137724	137812	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	137931	138080	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	137931	138080	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	138234	138387	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	138234	138387	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	138503	138724	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	138503	138724	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	138807	138992	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	138807	138992	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	139078	139200	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	139078	139200	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	139300	139400	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	139300	139400	.	-	0	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	exon	139646	139817	.	-	.	ID=exon:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	CDS	139646	139811	.	-	2	ID=CDS:470079;Parent=Transcript:470079;Name=fgenesh2_kg.1__33__AT1G01950.1
+scaffold_1	JGI_Filtered	five_prime_UTR	139812	139817	.	-	.	ID=five_prime_UTR:470079;Parent=Transcript:470079
+scaffold_1	JGI_Filtered	gene	140619	142191	.	-	.	ID=fgenesh1_pg.C_scaffold_1000030;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	mRNA	140619	142191	.	-	.	ID=Transcript:333465;Name=Transcript:333465;Parent=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	exon	140619	140702	.	-	.	ID=exon:333465;Parent=Transcript:333465
+scaffold_1	JGI_Filtered	CDS	140619	140702	.	-	0	ID=CDS:333465;Parent=Transcript:333465;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	exon	140904	141062	.	-	.	ID=exon:333465;Parent=Transcript:333465
+scaffold_1	JGI_Filtered	CDS	140904	141062	.	-	0	ID=CDS:333465;Parent=Transcript:333465;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	exon	141513	141674	.	-	.	ID=exon:333465;Parent=Transcript:333465
+scaffold_1	JGI_Filtered	CDS	141513	141674	.	-	0	ID=CDS:333465;Parent=Transcript:333465;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	exon	142028	142102	.	-	.	ID=exon:333465;Parent=Transcript:333465
+scaffold_1	JGI_Filtered	CDS	142028	142102	.	-	0	ID=CDS:333465;Parent=Transcript:333465;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	exon	142189	142191	.	-	.	ID=exon:333465;Parent=Transcript:333465
+scaffold_1	JGI_Filtered	CDS	142189	142191	.	-	0	ID=CDS:333465;Parent=Transcript:333465;Name=fgenesh1_pg.C_scaffold_1000030
+scaffold_1	JGI_Filtered	gene	142389	145631	.	+	.	ID=fgenesh2_kg.1__35__AT1G01930.1;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	mRNA	142389	145631	.	+	.	ID=Transcript:470081;Name=Transcript:470081;Parent=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	five_prime_UTR	142389	142407	.	+	.	ID=five_prime_UTR:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	exon	142389	142701	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	142408	142701	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	142804	143252	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	142804	143252	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	143436	143550	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	143436	143550	.	+	2	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	144058	144711	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	144058	144711	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	145035	145112	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	145035	145112	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	145204	145248	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	145204	145248	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	exon	145356	145631	.	+	.	ID=exon:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	CDS	145356	145460	.	+	0	ID=CDS:470081;Parent=Transcript:470081;Name=fgenesh2_kg.1__35__AT1G01930.1
+scaffold_1	JGI_Filtered	three_prime_UTR	145461	145631	.	+	.	ID=three_prime_UTR:470081;Parent=Transcript:470081
+scaffold_1	JGI_Filtered	gene	145719	146083	.	+	.	ID=scaffold_100045.1;Name=scaffold_100045.1
+scaffold_1	JGI_Filtered	mRNA	145719	146083	.	+	.	ID=Transcript:918764;Name=Transcript:918764;Parent=scaffold_100045.1
+scaffold_1	JGI_Filtered	five_prime_UTR	145719	145738	.	+	.	ID=five_prime_UTR:918764;Parent=Transcript:918764
+scaffold_1	JGI_Filtered	exon	145719	146083	.	+	.	ID=exon:918764;Parent=Transcript:918764
+scaffold_1	JGI_Filtered	CDS	145739	146062	.	+	0	ID=CDS:918764;Parent=Transcript:918764;Name=scaffold_100045.1
+scaffold_1	JGI_Filtered	three_prime_UTR	146063	146083	.	+	.	ID=three_prime_UTR:918764;Parent=Transcript:918764
+scaffold_1	JGI_Filtered	gene	146361	149918	.	-	.	ID=fgenesh2_kg.1__37__AT1G01920.2;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	mRNA	146361	149918	.	-	.	ID=Transcript:470083;Name=Transcript:470083;Parent=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	three_prime_UTR	146361	146435	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	146478	146615	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	146688	146780	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	146891	147006	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	147186	147434	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	147568	147639	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	147794	147850	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	148007	148071	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	148201	148281	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	three_prime_UTR	148414	148473	.	-	.	ID=three_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	exon	146361	146435	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	exon	146478	146615	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	exon	146688	146780	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	146688	146780	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	146891	147006	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	146891	147006	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	147186	147434	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	147186	147434	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	147568	147639	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	147568	147639	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	147794	147850	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	147794	147850	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148007	148071	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148007	148071	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148201	148281	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148201	148281	.	-	2	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148414	148473	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148414	148473	.	-	2	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148531	148556	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148531	148556	.	-	2	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	CDS	148531	146615	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148617	148766	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148617	148766	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148867	148893	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148867	148893	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	148977	149059	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	148977	149059	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	149190	149295	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	149190	149295	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	149372	149546	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	149372	149546	.	-	1	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	149624	149714	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	149624	149714	.	-	2	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	149786	149879	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	CDS	149786	149845	.	-	0	ID=CDS:470083;Parent=Transcript:470083;Name=fgenesh2_kg.1__37__AT1G01920.2
+scaffold_1	JGI_Filtered	exon	149902	149918	.	-	.	ID=exon:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	five_prime_UTR	149846	149879	.	-	.	ID=five_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	five_prime_UTR	149902	149918	.	-	.	ID=five_prime_UTR:470083;Parent=Transcript:470083
+scaffold_1	JGI_Filtered	gene	150165	152787	.	+	.	ID=fgenesh2_kg.1__42__AT1G01910.4;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	mRNA	150165	152787	.	+	.	ID=Transcript:470088;Name=Transcript:470088;Parent=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	five_prime_UTR	150165	150169	.	+	.	ID=five_prime_UTR:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	exon	150165	150424	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	150170	150424	.	+	0	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	150934	151058	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	150934	151058	.	+	0	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	151148	151298	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	151148	151298	.	+	2	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	151399	151509	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	151399	151509	.	+	0	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	151717	151855	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	151717	151855	.	+	0	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	151949	152064	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	151949	152064	.	+	1	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	152185	152379	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	CDS	152185	152349	.	+	0	ID=CDS:470088;Parent=Transcript:470088;Name=fgenesh2_kg.1__42__AT1G01910.4
+scaffold_1	JGI_Filtered	exon	152494	152718	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	exon	152764	152787	.	+	.	ID=exon:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	three_prime_UTR	152350	152379	.	+	.	ID=three_prime_UTR:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	three_prime_UTR	152494	152718	.	+	.	ID=three_prime_UTR:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	three_prime_UTR	152764	152787	.	+	.	ID=three_prime_UTR:470088;Parent=Transcript:470088
+scaffold_1	JGI_Filtered	gene	152834	155670	.	-	.	ID=Al_scaffold_0001_39;Name=Al_scaffold_0001_39
+scaffold_1	JGI_Filtered	mRNA	152834	155670	.	-	.	ID=Transcript:909785;Name=Transcript:909785;Parent=Al_scaffold_0001_39
+scaffold_1	JGI_Filtered	exon	152834	154508	.	-	.	ID=exon:909785;Parent=Transcript:909785
+scaffold_1	JGI_Filtered	CDS	152834	154508	.	-	0	ID=CDS:909785;Parent=Transcript:909785;Name=Al_scaffold_0001_39
+scaffold_1	JGI_Filtered	exon	155021	155670	.	-	.	ID=exon:909785;Parent=Transcript:909785
+scaffold_1	JGI_Filtered	CDS	155021	155670	.	-	1	ID=CDS:909785;Parent=Transcript:909785;Name=Al_scaffold_0001_39
+scaffold_1	JGI_Filtered	gene	156948	159348	.	+	.	ID=fgenesh1_pm.C_scaffold_1000036;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	mRNA	156948	159348	.	+	.	ID=Transcript:311256;Name=Transcript:311256;Parent=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	156948	157142	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	156948	157142	.	+	0	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	157332	157508	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	157332	157508	.	+	0	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	157585	157755	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	157585	157755	.	+	0	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	157836	158017	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	157836	158017	.	+	0	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	158097	158308	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	158097	158308	.	+	2	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	158341	158460	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	158341	158460	.	+	1	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	158542	159020	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	158542	159020	.	+	1	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	exon	159112	159348	.	+	.	ID=exon:311256;Parent=Transcript:311256
+scaffold_1	JGI_Filtered	CDS	159112	159348	.	+	0	ID=CDS:311256;Parent=Transcript:311256;Name=fgenesh1_pm.C_scaffold_1000036
+scaffold_1	JGI_Filtered	gene	159615	161800	.	+	.	ID=fgenesh2_kg.1__44__AT1G01860.1;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	mRNA	159615	161800	.	+	.	ID=Transcript:470090;Name=Transcript:470090;Parent=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	five_prime_UTR	159615	159629	.	+	.	ID=five_prime_UTR:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	exon	159615	159857	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	159630	159857	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	159950	160099	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	159950	160099	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	160185	160241	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	160185	160241	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	160319	160417	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	160319	160417	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	160516	160611	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	160516	160611	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	160691	160775	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	160691	160775	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	160865	160917	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	160865	160917	.	+	1	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	161009	161092	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	161009	161092	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	161165	161275	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	161165	161275	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	161444	161611	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	CDS	161444	161509	.	+	0	ID=CDS:470090;Parent=Transcript:470090;Name=fgenesh2_kg.1__44__AT1G01860.1
+scaffold_1	JGI_Filtered	exon	161626	161710	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	exon	161723	161800	.	+	.	ID=exon:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	three_prime_UTR	161510	161611	.	+	.	ID=three_prime_UTR:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	three_prime_UTR	161626	161710	.	+	.	ID=three_prime_UTR:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	three_prime_UTR	161723	161800	.	+	.	ID=three_prime_UTR:470090;Parent=Transcript:470090
+scaffold_1	JGI_Filtered	gene	161789	162258	.	-	.	ID=scaffold_100051.1;Name=scaffold_100051.1
+scaffold_1	JGI_Filtered	mRNA	161789	162258	.	-	.	ID=Transcript:918770;Name=Transcript:918770;Parent=scaffold_100051.1
+scaffold_1	JGI_Filtered	three_prime_UTR	161789	161809	.	-	.	ID=three_prime_UTR:918770;Parent=Transcript:918770
+scaffold_1	JGI_Filtered	exon	161789	162258	.	-	.	ID=exon:918770;Parent=Transcript:918770
+scaffold_1	JGI_Filtered	CDS	161810	162238	.	-	0	ID=CDS:918770;Parent=Transcript:918770;Name=scaffold_100051.1
+scaffold_1	JGI_Filtered	five_prime_UTR	162239	162258	.	-	.	ID=five_prime_UTR:918770;Parent=Transcript:918770
+scaffold_1	JGI_Filtered	gene	164416	168249	.	+	.	ID=fgenesh2_kg.1__46__AT1G01830.3;Name=fgenesh2_kg.1__46__AT1G01830.3
+scaffold_1	JGI_Filtered	mRNA	164416	168249	.	+	.	ID=Transcript:470092;Name=Transcript:470092;Parent=fgenesh2_kg.1__46__AT1G01830.3
+scaffold_1	JGI_Filtered	five_prime_UTR	164416	164539	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	five_prime_UTR	164601	164646	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	five_prime_UTR	164680	164690	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	five_prime_UTR	165345	165392	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	five_prime_UTR	166016	166167	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	five_prime_UTR	166306	166373	.	+	.	ID=five_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	164416	164539	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	164601	164646	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	164680	164690	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	165345	165392	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	166016	166167	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	exon	166306	168085	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	CDS	166374	168083	.	+	0	ID=CDS:470092;Parent=Transcript:470092;Name=fgenesh2_kg.1__46__AT1G01830.3
+scaffold_1	JGI_Filtered	exon	168106	168249	.	+	.	ID=exon:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	three_prime_UTR	168084	168085	.	+	.	ID=three_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	three_prime_UTR	168106	168249	.	+	.	ID=three_prime_UTR:470092;Parent=Transcript:470092
+scaffold_1	JGI_Filtered	gene	168435	168702	.	+	.	ID=scaffold_100053.1;Name=scaffold_100053.1
+scaffold_1	JGI_Filtered	mRNA	168435	168702	.	+	.	ID=Transcript:918772;Name=Transcript:918772;Parent=scaffold_100053.1
+scaffold_1	JGI_Filtered	five_prime_UTR	168435	168454	.	+	.	ID=five_prime_UTR:918772;Parent=Transcript:918772
+scaffold_1	JGI_Filtered	exon	168435	168702	.	+	.	ID=exon:918772;Parent=Transcript:918772
+scaffold_1	JGI_Filtered	CDS	168455	168682	.	+	0	ID=CDS:918772;Parent=Transcript:918772;Name=scaffold_100053.1
+scaffold_1	JGI_Filtered	three_prime_UTR	168683	168702	.	+	.	ID=three_prime_UTR:918772;Parent=Transcript:918772
+scaffold_1	JGI_Filtered	gene	171411	173431	.	+	.	ID=fgenesh2_kg.1__48__AT1G01820.1;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	mRNA	171411	173431	.	+	.	ID=Transcript:470094;Name=Transcript:470094;Parent=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	five_prime_UTR	171411	171499	.	+	.	ID=five_prime_UTR:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	five_prime_UTR	171750	171768	.	+	.	ID=five_prime_UTR:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	exon	171411	171499	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	exon	171750	171960	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	171769	171960	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	172325	172399	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	172325	172399	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	172484	172558	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	172484	172558	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	172648	172728	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	172648	172728	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	172819	172893	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	172819	172893	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	172982	173155	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	172982	173155	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	173240	173327	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	CDS	173240	173275	.	+	0	ID=CDS:470094;Parent=Transcript:470094;Name=fgenesh2_kg.1__48__AT1G01820.1
+scaffold_1	JGI_Filtered	exon	173347	173431	.	+	.	ID=exon:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	three_prime_UTR	173276	173327	.	+	.	ID=three_prime_UTR:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	three_prime_UTR	173347	173431	.	+	.	ID=three_prime_UTR:470094;Parent=Transcript:470094
+scaffold_1	JGI_Filtered	gene	173573	174151	.	-	.	ID=fgenesh2_kg.1__49__AT1G01810.1;Name=fgenesh2_kg.1__49__AT1G01810.1
+scaffold_1	JGI_Filtered	mRNA	173573	174151	.	-	.	ID=Transcript:470095;Name=Transcript:470095;Parent=fgenesh2_kg.1__49__AT1G01810.1
+scaffold_1	JGI_Filtered	three_prime_UTR	173573	173611	.	-	.	ID=three_prime_UTR:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	three_prime_UTR	173622	173647	.	-	.	ID=three_prime_UTR:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	three_prime_UTR	173673	173687	.	-	.	ID=three_prime_UTR:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	three_prime_UTR	173701	173716	.	-	.	ID=three_prime_UTR:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	exon	173573	173611	.	-	.	ID=exon:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	exon	173622	173647	.	-	.	ID=exon:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	exon	173673	173687	.	-	.	ID=exon:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	exon	173701	174151	.	-	.	ID=exon:470095;Parent=Transcript:470095
+scaffold_1	JGI_Filtered	CDS	173717	174151	.	-	0	ID=CDS:470095;Parent=Transcript:470095;Name=fgenesh2_kg.1__49__AT1G01810.1
+scaffold_1	JGI_Filtered	gene	175723	177344	.	-	.	ID=scaffold_100056.1;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	mRNA	175723	177344	.	-	.	ID=Transcript:918775;Name=Transcript:918775;Parent=scaffold_100056.1
+scaffold_1	JGI_Filtered	three_prime_UTR	175723	175742	.	-	.	ID=three_prime_UTR:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	exon	175723	176120	.	-	.	ID=exon:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	CDS	175743	176120	.	-	0	ID=CDS:918775;Parent=Transcript:918775;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	exon	176339	176515	.	-	.	ID=exon:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	CDS	176339	176515	.	-	0	ID=CDS:918775;Parent=Transcript:918775;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	exon	176622	176687	.	-	.	ID=exon:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	CDS	176622	176687	.	-	0	ID=CDS:918775;Parent=Transcript:918775;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	exon	176952	177204	.	-	.	ID=exon:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	CDS	176952	177204	.	-	0	ID=CDS:918775;Parent=Transcript:918775;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	exon	177308	177344	.	-	.	ID=exon:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	CDS	177308	177321	.	-	1	ID=CDS:918775;Parent=Transcript:918775;Name=scaffold_100056.1
+scaffold_1	JGI_Filtered	five_prime_UTR	177322	177344	.	-	.	ID=five_prime_UTR:918775;Parent=Transcript:918775
+scaffold_1	JGI_Filtered	gene	178456	184533	.	-	.	ID=fgenesh1_pm.C_scaffold_1000043;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	mRNA	178456	184533	.	-	.	ID=Transcript:311263;Name=Transcript:311263;Parent=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	178456	178578	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	178456	178578	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	178671	178745	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	178671	178745	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	178828	178884	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	178828	178884	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	178976	179152	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	178976	179152	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	179247	179313	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	179247	179313	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	179583	179641	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	179583	179641	.	-	1	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	179769	179822	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	179769	179822	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	179946	180095	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	179946	180095	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	180235	180444	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	180235	180444	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	180615	180743	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	180615	180743	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	180855	180959	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	180855	180959	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	181183	181272	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	181183	181272	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	181520	181585	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	181520	181585	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	181663	181731	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	181663	181731	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	181865	181984	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	181865	181984	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	182099	182158	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	182099	182158	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	182246	182382	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	182246	182382	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	182577	182667	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	182577	182667	.	-	2	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	182753	182924	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	182753	182924	.	-	0	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	exon	183029	184533	.	-	.	ID=exon:311263;Parent=Transcript:311263
+scaffold_1	JGI_Filtered	CDS	183029	184533	.	-	1	ID=CDS:311263;Parent=Transcript:311263;Name=fgenesh1_pm.C_scaffold_1000043
+scaffold_1	JGI_Filtered	gene	185231	186495	.	-	.	ID=scaffold_100058.1;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	mRNA	185231	186495	.	-	.	ID=Transcript:918777;Name=Transcript:918777;Parent=scaffold_100058.1
+scaffold_1	JGI_Filtered	three_prime_UTR	185231	185250	.	-	.	ID=three_prime_UTR:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	exon	185231	185520	.	-	.	ID=exon:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	CDS	185251	185520	.	-	0	ID=CDS:918777;Parent=Transcript:918777;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	exon	185843	185932	.	-	.	ID=exon:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	CDS	185843	185932	.	-	0	ID=CDS:918777;Parent=Transcript:918777;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	exon	186040	186062	.	-	.	ID=exon:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	CDS	186040	186062	.	-	0	ID=CDS:918777;Parent=Transcript:918777;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	exon	186151	186250	.	-	.	ID=exon:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	CDS	186151	186250	.	-	2	ID=CDS:918777;Parent=Transcript:918777;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	exon	186341	186495	.	-	.	ID=exon:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	CDS	186341	186475	.	-	0	ID=CDS:918777;Parent=Transcript:918777;Name=scaffold_100058.1
+scaffold_1	JGI_Filtered	five_prime_UTR	186476	186495	.	-	.	ID=five_prime_UTR:918777;Parent=Transcript:918777
+scaffold_1	JGI_Filtered	gene	186514	191052	.	-	.	ID=fgenesh2_kg.1__52__AT1G01770.1;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	mRNA	186514	191052	.	-	.	ID=Transcript:470098;Name=Transcript:470098;Parent=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	three_prime_UTR	186514	186539	.	-	.	ID=three_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	three_prime_UTR	186622	186895	.	-	.	ID=three_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	three_prime_UTR	187202	187636	.	-	.	ID=three_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	three_prime_UTR	187868	187975	.	-	.	ID=three_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	three_prime_UTR	188065	188104	.	-	.	ID=three_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	exon	186514	186539	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	exon	186622	186895	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	exon	187202	187636	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	exon	187868	187975	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	187868	187975	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	188065	188104	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	188065	188104	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	188391	188623	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	188391	188623	.	-	1	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	CDS	188391	187636	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	188773	188853	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	188773	188853	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	188938	189057	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	188938	189057	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	189136	189326	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	189136	189326	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	189419	189533	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	189419	189533	.	-	2	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	189739	189852	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	189739	189852	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	190064	190104	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	190064	190104	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	190219	190317	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	190219	190317	.	-	2	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	190407	190481	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	190407	190481	.	-	2	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	190603	190804	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	190603	190804	.	-	2	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	190875	190976	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	CDS	190875	190925	.	-	0	ID=CDS:470098;Parent=Transcript:470098;Name=fgenesh2_kg.1__52__AT1G01770.1
+scaffold_1	JGI_Filtered	exon	191011	191052	.	-	.	ID=exon:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	five_prime_UTR	190926	190976	.	-	.	ID=five_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	five_prime_UTR	191011	191052	.	-	.	ID=five_prime_UTR:470098;Parent=Transcript:470098
+scaffold_1	JGI_Filtered	gene	191251	193076	.	+	.	ID=Al_scaffold_0001_50;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	mRNA	191251	193076	.	+	.	ID=Transcript:909796;Name=Transcript:909796;Parent=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	191251	191383	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	191251	191383	.	+	0	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	191460	191765	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	191460	191765	.	+	1	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	191855	192001	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	191855	192001	.	+	1	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	192124	192237	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	192124	192237	.	+	1	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	192330	192499	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	192330	192499	.	+	1	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	192579	192655	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	192579	192655	.	+	0	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	192748	192867	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	192748	192867	.	+	2	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	exon	192944	193076	.	+	.	ID=exon:909796;Parent=Transcript:909796
+scaffold_1	JGI_Filtered	CDS	192944	193076	.	+	2	ID=CDS:909796;Parent=Transcript:909796;Name=Al_scaffold_0001_50
+scaffold_1	JGI_Filtered	gene	193425	194152	.	-	.	ID=scaffold_100061.1;Name=scaffold_100061.1
+scaffold_1	JGI_Filtered	mRNA	193425	194152	.	-	.	ID=Transcript:918780;Name=Transcript:918780;Parent=scaffold_100061.1
+scaffold_1	JGI_Filtered	three_prime_UTR	193425	193531	.	-	.	ID=three_prime_UTR:918780;Parent=Transcript:918780
+scaffold_1	JGI_Filtered	exon	193425	193685	.	-	.	ID=exon:918780;Parent=Transcript:918780
+scaffold_1	JGI_Filtered	CDS	193532	193685	.	-	0	ID=CDS:918780;Parent=Transcript:918780;Name=scaffold_100061.1
+scaffold_1	JGI_Filtered	exon	193761	194026	.	-	.	ID=exon:918780;Parent=Transcript:918780
+scaffold_1	JGI_Filtered	CDS	193761	194026	.	-	1	ID=CDS:918780;Parent=Transcript:918780;Name=scaffold_100061.1
+scaffold_1	JGI_Filtered	exon	194127	194152	.	-	.	ID=exon:918780;Parent=Transcript:918780
+scaffold_1	JGI_Filtered	CDS	194127	194129	.	-	0	ID=CDS:918780;Parent=Transcript:918780;Name=scaffold_100061.1
+scaffold_1	JGI_Filtered	five_prime_UTR	194130	194152	.	-	.	ID=five_prime_UTR:918780;Parent=Transcript:918780
+scaffold_1	JGI_Filtered	gene	197601	198678	.	-	.	ID=fgenesh2_kg.1__55__AT1G01730.1;Name=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	mRNA	197601	198678	.	-	.	ID=Transcript:470101;Name=Transcript:470101;Parent=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	three_prime_UTR	197601	197718	.	-	.	ID=three_prime_UTR:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	three_prime_UTR	197755	197782	.	-	.	ID=three_prime_UTR:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	exon	197601	197718	.	-	.	ID=exon:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	exon	197755	198002	.	-	.	ID=exon:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	CDS	197783	198002	.	-	0	ID=CDS:470101;Parent=Transcript:470101;Name=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	exon	198024	198120	.	-	.	ID=exon:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	CDS	198024	198120	.	-	1	ID=CDS:470101;Parent=Transcript:470101;Name=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	exon	198230	198284	.	-	.	ID=exon:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	CDS	198230	198284	.	-	2	ID=CDS:470101;Parent=Transcript:470101;Name=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	exon	198360	198678	.	-	.	ID=exon:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	CDS	198360	198632	.	-	0	ID=CDS:470101;Parent=Transcript:470101;Name=fgenesh2_kg.1__55__AT1G01730.1
+scaffold_1	JGI_Filtered	five_prime_UTR	198633	198678	.	-	.	ID=five_prime_UTR:470101;Parent=Transcript:470101
+scaffold_1	JGI_Filtered	gene	198837	204518	.	+	.	ID=fgenesh2_kg.1__56__AT1G01725.1;Name=fgenesh2_kg.1__56__AT1G01725.1
+scaffold_1	JGI_Filtered	mRNA	198837	204518	.	+	.	ID=Transcript:470102;Name=Transcript:470102;Parent=fgenesh2_kg.1__56__AT1G01725.1
+scaffold_1	JGI_Filtered	five_prime_UTR	198837	198875	.	+	.	ID=five_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	exon	198837	198989	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	CDS	198876	198989	.	+	0	ID=CDS:470102;Parent=Transcript:470102;Name=fgenesh2_kg.1__56__AT1G01725.1
+scaffold_1	JGI_Filtered	exon	204167	204274	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	CDS	204167	204230	.	+	0	ID=CDS:470102;Parent=Transcript:470102;Name=fgenesh2_kg.1__56__AT1G01725.1
+scaffold_1	JGI_Filtered	exon	204305	204369	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	exon	204424	204435	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	exon	204464	204474	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	exon	204499	204518	.	+	.	ID=exon:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	three_prime_UTR	204231	204274	.	+	.	ID=three_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	three_prime_UTR	204305	204369	.	+	.	ID=three_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	three_prime_UTR	204424	204435	.	+	.	ID=three_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	three_prime_UTR	204464	204474	.	+	.	ID=three_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	three_prime_UTR	204499	204518	.	+	.	ID=three_prime_UTR:470102;Parent=Transcript:470102
+scaffold_1	JGI_Filtered	gene	204808	205917	.	-	.	ID=scaffold_100066.1;Name=scaffold_100066.1
+scaffold_1	JGI_Filtered	mRNA	204808	205917	.	-	.	ID=Transcript:918785;Name=Transcript:918785;Parent=scaffold_100066.1
+scaffold_1	JGI_Filtered	three_prime_UTR	204808	204827	.	-	.	ID=three_prime_UTR:918785;Parent=Transcript:918785
+scaffold_1	JGI_Filtered	exon	204808	205277	.	-	.	ID=exon:918785;Parent=Transcript:918785
+scaffold_1	JGI_Filtered	CDS	204828	205277	.	-	0	ID=CDS:918785;Parent=Transcript:918785;Name=scaffold_100066.1
+scaffold_1	JGI_Filtered	exon	205364	205641	.	-	.	ID=exon:918785;Parent=Transcript:918785
+scaffold_1	JGI_Filtered	CDS	205364	205641	.	-	0	ID=CDS:918785;Parent=Transcript:918785;Name=scaffold_100066.1
+scaffold_1	JGI_Filtered	exon	205728	205917	.	-	.	ID=exon:918785;Parent=Transcript:918785
+scaffold_1	JGI_Filtered	CDS	205728	205887	.	-	2	ID=CDS:918785;Parent=Transcript:918785;Name=scaffold_100066.1
+scaffold_1	JGI_Filtered	five_prime_UTR	205888	205917	.	-	.	ID=five_prime_UTR:918785;Parent=Transcript:918785
+scaffold_1	JGI_Filtered	gene	206707	211900	.	-	.	ID=fgenesh2_kg.1__58__AT1G01710.1;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	mRNA	206707	211900	.	-	.	ID=Transcript:470104;Name=Transcript:470104;Parent=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	three_prime_UTR	206707	206984	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	207538	207543	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	207643	207670	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	207683	207884	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	207913	208022	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	208044	208113	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	three_prime_UTR	208147	208329	.	-	.	ID=three_prime_UTR:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	206707	206984	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	207538	207543	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	207643	207670	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	207683	207884	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	207913	208022	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	208044	208113	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	exon	208147	208407	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	208330	208407	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	208540	208608	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	208540	208608	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	208940	208988	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	208940	208988	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	209130	209231	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	209130	209231	.	-	1	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	209497	209553	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	209497	209553	.	-	1	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	209750	209854	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	209750	209854	.	-	1	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	209939	209994	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	209939	209994	.	-	1	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	210068	210130	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	210068	210130	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	210262	210374	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	210262	210374	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	210489	210576	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	210489	210576	.	-	2	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	210710	210787	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	210710	210787	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211012	211137	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211012	211137	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211240	211286	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211240	211286	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211371	211446	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211371	211446	.	-	2	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211530	211597	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211530	211597	.	-	0	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211707	211799	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211707	211799	.	-	2	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	exon	211885	211900	.	-	.	ID=exon:470104;Parent=Transcript:470104
+scaffold_1	JGI_Filtered	CDS	211885	211900	.	-	2	ID=CDS:470104;Parent=Transcript:470104;Name=fgenesh2_kg.1__58__AT1G01710.1
+scaffold_1	JGI_Filtered	gene	216564	216889	.	+	.	ID=scaffold_100069.1;Name=scaffold_100069.1
+scaffold_1	JGI_Filtered	mRNA	216564	216889	.	+	.	ID=Transcript:918788;Name=Transcript:918788;Parent=scaffold_100069.1
+scaffold_1	JGI_Filtered	five_prime_UTR	216564	216583	.	+	.	ID=five_prime_UTR:918788;Parent=Transcript:918788
+scaffold_1	JGI_Filtered	exon	216564	216889	.	+	.	ID=exon:918788;Parent=Transcript:918788
+scaffold_1	JGI_Filtered	CDS	216584	216868	.	+	0	ID=CDS:918788;Parent=Transcript:918788;Name=scaffold_100069.1
+scaffold_1	JGI_Filtered	three_prime_UTR	216869	216889	.	+	.	ID=three_prime_UTR:918788;Parent=Transcript:918788
+scaffold_1	JGI_Filtered	gene	220193	225616	.	-	.	ID=Al_scaffold_0001_57;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	mRNA	220193	225616	.	-	.	ID=Transcript:909803;Name=Transcript:909803;Parent=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	220193	220728	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	220193	220728	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	221051	221182	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	221051	221182	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	221257	221832	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	221257	221832	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	222575	222652	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	222575	222652	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	222767	222851	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	222767	222851	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	222947	223094	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	222947	223094	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223180	223235	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223180	223235	.	-	1	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223328	223369	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223328	223369	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223452	223508	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223452	223508	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223584	223625	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223584	223625	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223700	223762	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223700	223762	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	223902	224096	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	223902	224096	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	224185	224237	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	224185	224237	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	224598	224735	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	224598	224735	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	224841	224994	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	224841	224994	.	-	2	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	225096	225249	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	225096	225249	.	-	0	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	exon	225558	225616	.	-	.	ID=exon:909803;Parent=Transcript:909803
+scaffold_1	JGI_Filtered	CDS	225558	225616	.	-	1	ID=CDS:909803;Parent=Transcript:909803;Name=Al_scaffold_0001_57
+scaffold_1	JGI_Filtered	gene	226539	228679	.	+	.	ID=Al_scaffold_0001_58;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	mRNA	226539	228679	.	+	.	ID=Transcript:909804;Name=Transcript:909804;Parent=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	226539	226677	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	226539	226677	.	+	0	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	227470	227576	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	227470	227576	.	+	1	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	227659	227891	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	227659	227891	.	+	0	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	228002	228131	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	228002	228131	.	+	2	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	228237	228359	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	228237	228359	.	+	0	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	exon	228482	228679	.	+	.	ID=exon:909804;Parent=Transcript:909804
+scaffold_1	JGI_Filtered	CDS	228482	228679	.	+	0	ID=CDS:909804;Parent=Transcript:909804;Name=Al_scaffold_0001_58
+scaffold_1	JGI_Filtered	gene	229820	235338	.	+	.	ID=fgenesh1_pg.C_scaffold_1000054;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	mRNA	229820	235338	.	+	.	ID=Transcript:333489;Name=Transcript:333489;Parent=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	229820	229976	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	229820	229976	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	230421	230524	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	230421	230524	.	+	1	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	230701	230831	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	230701	230831	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	230975	231079	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	230975	231079	.	+	2	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	231154	231310	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	231154	231310	.	+	2	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	231606	232025	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	231606	232025	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	232245	232298	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	232245	232298	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	232686	232896	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	232686	232896	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	233059	233135	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	233059	233135	.	+	1	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	233287	233417	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	233287	233417	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	233491	233595	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	233491	233595	.	+	2	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	233681	233861	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	233681	233861	.	+	2	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	233967	234104	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	233967	234104	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	234183	234449	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	234183	234449	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	234526	234666	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	234526	234666	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	234738	235058	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	234738	235058	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	exon	235153	235338	.	+	.	ID=exon:333489;Parent=Transcript:333489
+scaffold_1	JGI_Filtered	CDS	235153	235338	.	+	0	ID=CDS:333489;Parent=Transcript:333489;Name=fgenesh1_pg.C_scaffold_1000054
+scaffold_1	JGI_Filtered	gene	236778	241721	.	+	.	ID=fgenesh2_kg.1__64__AT1G01650.1;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	mRNA	236778	241721	.	+	.	ID=Transcript:470110;Name=Transcript:470110;Parent=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	five_prime_UTR	236778	236880	.	+	.	ID=five_prime_UTR:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	five_prime_UTR	236892	236927	.	+	.	ID=five_prime_UTR:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	exon	236778	236880	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	exon	236892	237071	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	236928	237071	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	237546	237704	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	237546	237704	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	237800	237911	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	237800	237911	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	238023	238142	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	238023	238142	.	+	1	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	238224	238375	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	238224	238375	.	+	1	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	238493	238675	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	238493	238675	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	238770	238804	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	238770	238804	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	239232	239394	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	239232	239394	.	+	2	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	239557	239610	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	239557	239610	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	239951	240043	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	239951	240043	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	240196	240338	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	240196	240338	.	+	0	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	241021	241091	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	241021	241091	.	+	2	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	241173	241256	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	241173	241256	.	+	1	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	241349	241642	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	CDS	241349	241458	.	+	1	ID=CDS:470110;Parent=Transcript:470110;Name=fgenesh2_kg.1__64__AT1G01650.1
+scaffold_1	JGI_Filtered	exon	241662	241721	.	+	.	ID=exon:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	three_prime_UTR	241459	241642	.	+	.	ID=three_prime_UTR:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	three_prime_UTR	241662	241721	.	+	.	ID=three_prime_UTR:470110;Parent=Transcript:470110
+scaffold_1	JGI_Filtered	gene	242562	243321	.	+	.	ID=scaffold_100076.1;Name=scaffold_100076.1
+scaffold_1	JGI_Filtered	mRNA	242562	243321	.	+	.	ID=Transcript:918795;Name=Transcript:918795;Parent=scaffold_100076.1
+scaffold_1	JGI_Filtered	five_prime_UTR	242562	242581	.	+	.	ID=five_prime_UTR:918795;Parent=Transcript:918795
+scaffold_1	JGI_Filtered	exon	242562	242694	.	+	.	ID=exon:918795;Parent=Transcript:918795
+scaffold_1	JGI_Filtered	CDS	242582	242694	.	+	0	ID=CDS:918795;Parent=Transcript:918795;Name=scaffold_100076.1
+scaffold_1	JGI_Filtered	exon	242826	243321	.	+	.	ID=exon:918795;Parent=Transcript:918795
+scaffold_1	JGI_Filtered	CDS	242826	243300	.	+	2	ID=CDS:918795;Parent=Transcript:918795;Name=scaffold_100076.1
+scaffold_1	JGI_Filtered	three_prime_UTR	243301	243321	.	+	.	ID=three_prime_UTR:918795;Parent=Transcript:918795
+scaffold_1	JGI_Filtered	gene	243695	245459	.	-	.	ID=fgenesh2_kg.1__67__AT1G01630.1;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	mRNA	243695	245459	.	-	.	ID=Transcript:470113;Name=Transcript:470113;Parent=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	three_prime_UTR	243695	243738	.	-	.	ID=three_prime_UTR:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	three_prime_UTR	243763	243928	.	-	.	ID=three_prime_UTR:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	three_prime_UTR	244012	244122	.	-	.	ID=three_prime_UTR:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	three_prime_UTR	244533	244638	.	-	.	ID=three_prime_UTR:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	exon	243695	243738	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	exon	243763	243928	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	exon	244012	244122	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	CDS	244012	244122	.	-	0	ID=CDS:470113;Parent=Transcript:470113;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	exon	244533	244638	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	CDS	244533	244638	.	-	0	ID=CDS:470113;Parent=Transcript:470113;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	exon	244744	245039	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	CDS	244744	245039	.	-	1	ID=CDS:470113;Parent=Transcript:470113;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	CDS	244744	243928	.	-	0	ID=CDS:470113;Parent=Transcript:470113;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	exon	245130	245459	.	-	.	ID=exon:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	CDS	245130	245270	.	-	0	ID=CDS:470113;Parent=Transcript:470113;Name=fgenesh2_kg.1__67__AT1G01630.1
+scaffold_1	JGI_Filtered	five_prime_UTR	245271	245459	.	-	.	ID=five_prime_UTR:470113;Parent=Transcript:470113
+scaffold_1	JGI_Filtered	gene	246920	248384	.	+	.	ID=fgenesh2_kg.1__69__AT1G01620.1;Name=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	mRNA	246920	248384	.	+	.	ID=Transcript:470115;Name=Transcript:470115;Parent=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	five_prime_UTR	246920	246981	.	+	.	ID=five_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	five_prime_UTR	247013	247037	.	+	.	ID=five_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	exon	246920	246981	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	exon	247013	247365	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	CDS	247038	247365	.	+	0	ID=CDS:470115;Parent=Transcript:470115;Name=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	exon	247453	247748	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	CDS	247453	247748	.	+	1	ID=CDS:470115;Parent=Transcript:470115;Name=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	exon	247825	247965	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	CDS	247825	247965	.	+	0	ID=CDS:470115;Parent=Transcript:470115;Name=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	exon	248051	248148	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	CDS	248051	248146	.	+	0	ID=CDS:470115;Parent=Transcript:470115;Name=fgenesh2_kg.1__69__AT1G01620.1
+scaffold_1	JGI_Filtered	exon	248168	248212	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	exon	248240	248256	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	exon	248292	248309	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	exon	248350	248384	.	+	.	ID=exon:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	three_prime_UTR	248147	248148	.	+	.	ID=three_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	three_prime_UTR	248168	248212	.	+	.	ID=three_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	three_prime_UTR	248240	248256	.	+	.	ID=three_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	three_prime_UTR	248292	248309	.	+	.	ID=three_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	three_prime_UTR	248350	248384	.	+	.	ID=three_prime_UTR:470115;Parent=Transcript:470115
+scaffold_1	JGI_Filtered	gene	249785	252308	.	+	.	ID=scaffold_100079.1;Name=scaffold_100079.1
+scaffold_1	JGI_Filtered	mRNA	249785	252308	.	+	.	ID=Transcript:918798;Name=Transcript:918798;Parent=scaffold_100079.1
+scaffold_1	JGI_Filtered	five_prime_UTR	249785	249804	.	+	.	ID=five_prime_UTR:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	exon	249785	250115	.	+	.	ID=exon:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	CDS	249805	250115	.	+	0	ID=CDS:918798;Parent=Transcript:918798;Name=scaffold_100079.1
+scaffold_1	JGI_Filtered	exon	250194	250506	.	+	.	ID=exon:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	CDS	250194	250506	.	+	2	ID=CDS:918798;Parent=Transcript:918798;Name=scaffold_100079.1
+scaffold_1	JGI_Filtered	exon	250999	251473	.	+	.	ID=exon:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	CDS	250999	251473	.	+	0	ID=CDS:918798;Parent=Transcript:918798;Name=scaffold_100079.1
+scaffold_1	JGI_Filtered	exon	251879	252308	.	+	.	ID=exon:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	CDS	251879	252288	.	+	1	ID=CDS:918798;Parent=Transcript:918798;Name=scaffold_100079.1
+scaffold_1	JGI_Filtered	three_prime_UTR	252289	252308	.	+	.	ID=three_prime_UTR:918798;Parent=Transcript:918798
+scaffold_1	JGI_Filtered	gene	253000	254805	.	-	.	ID=scaffold_100080.1;Name=scaffold_100080.1
+scaffold_1	JGI_Filtered	mRNA	253000	254805	.	-	.	ID=Transcript:918799;Name=Transcript:918799;Parent=scaffold_100080.1
+scaffold_1	JGI_Filtered	three_prime_UTR	253000	253019	.	-	.	ID=three_prime_UTR:918799;Parent=Transcript:918799
+scaffold_1	JGI_Filtered	exon	253000	254262	.	-	.	ID=exon:918799;Parent=Transcript:918799
+scaffold_1	JGI_Filtered	CDS	253020	254262	.	-	0	ID=CDS:918799;Parent=Transcript:918799;Name=scaffold_100080.1
+scaffold_1	JGI_Filtered	exon	254364	254805	.	-	.	ID=exon:918799;Parent=Transcript:918799
+scaffold_1	JGI_Filtered	CDS	254364	254785	.	-	1	ID=CDS:918799;Parent=Transcript:918799;Name=scaffold_100080.1
+scaffold_1	JGI_Filtered	five_prime_UTR	254786	254805	.	-	.	ID=five_prime_UTR:918799;Parent=Transcript:918799
+scaffold_1	JGI_Filtered	gene	262221	265311	.	-	.	ID=Al_scaffold_0001_67;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	mRNA	262221	265311	.	-	.	ID=Transcript:909813;Name=Transcript:909813;Parent=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	262221	262360	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	262221	262360	.	-	0	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	262472	263148	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	262472	263148	.	-	2	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	263239	263488	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	263239	263488	.	-	1	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	263571	263898	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	263571	263898	.	-	2	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	263976	264213	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	263976	264213	.	-	0	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	264661	264861	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	264661	264861	.	-	1	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	264958	265060	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	264958	265060	.	-	1	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	exon	265134	265311	.	-	.	ID=exon:909813;Parent=Transcript:909813
+scaffold_1	JGI_Filtered	CDS	265134	265311	.	-	2	ID=CDS:909813;Parent=Transcript:909813;Name=Al_scaffold_0001_67
+scaffold_1	JGI_Filtered	gene	266834	270418	.	-	.	ID=fgenesh2_kg.1__73__AT1G01580.1;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	mRNA	266834	270418	.	-	.	ID=Transcript:470119;Name=Transcript:470119;Parent=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	three_prime_UTR	266834	267070	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	three_prime_UTR	267171	267886	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	three_prime_UTR	268015	268258	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	three_prime_UTR	268350	268677	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	three_prime_UTR	269163	269397	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	three_prime_UTR	269656	269850	.	-	.	ID=three_prime_UTR:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	exon	266834	267070	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	exon	267171	267886	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	267171	267886	.	-	2	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	268015	268258	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	268015	268258	.	-	1	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	268350	268677	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	268350	268677	.	-	2	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	269163	269397	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	269163	269397	.	-	0	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	269656	269850	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	269656	269850	.	-	1	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	269933	270035	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	269933	270035	.	-	1	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	CDS	269933	267070	.	-	0	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	exon	270202	270418	.	-	.	ID=exon:470119;Parent=Transcript:470119
+scaffold_1	JGI_Filtered	CDS	270202	270418	.	-	2	ID=CDS:470119;Parent=Transcript:470119;Name=fgenesh2_kg.1__73__AT1G01580.1
+scaffold_1	JGI_Filtered	gene	272408	273876	.	-	.	ID=scaffold_100084.1;Name=scaffold_100084.1
+scaffold_1	JGI_Filtered	mRNA	272408	273876	.	-	.	ID=Transcript:918803;Name=Transcript:918803;Parent=scaffold_100084.1
+scaffold_1	JGI_Filtered	three_prime_UTR	272408	272428	.	-	.	ID=three_prime_UTR:918803;Parent=Transcript:918803
+scaffold_1	JGI_Filtered	exon	272408	273876	.	-	.	ID=exon:918803;Parent=Transcript:918803
+scaffold_1	JGI_Filtered	CDS	272429	273856	.	-	0	ID=CDS:918803;Parent=Transcript:918803;Name=scaffold_100084.1
+scaffold_1	JGI_Filtered	five_prime_UTR	273857	273876	.	-	.	ID=five_prime_UTR:918803;Parent=Transcript:918803
+scaffold_1	JGI_Filtered	gene	274075	276522	.	-	.	ID=Al_scaffold_0001_70;Name=Al_scaffold_0001_70
+scaffold_1	JGI_Filtered	mRNA	274075	276522	.	-	.	ID=Transcript:909816;Name=Transcript:909816;Parent=Al_scaffold_0001_70
+scaffold_1	JGI_Filtered	exon	274075	274185	.	-	.	ID=exon:909816;Parent=Transcript:909816
+scaffold_1	JGI_Filtered	CDS	274075	274185	.	-	0	ID=CDS:909816;Parent=Transcript:909816;Name=Al_scaffold_0001_70
+scaffold_1	JGI_Filtered	exon	274278	274826	.	-	.	ID=exon:909816;Parent=Transcript:909816
+scaffold_1	JGI_Filtered	CDS	274278	274826	.	-	0	ID=CDS:909816;Parent=Transcript:909816;Name=Al_scaffold_0001_70
+scaffold_1	JGI_Filtered	exon	275650	276522	.	-	.	ID=exon:909816;Parent=Transcript:909816
+scaffold_1	JGI_Filtered	CDS	275650	276522	.	-	0	ID=CDS:909816;Parent=Transcript:909816;Name=Al_scaffold_0001_70
+scaffold_1	JGI_Filtered	gene	281840	283744	.	-	.	ID=scaffold_100086.1;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	mRNA	281840	283744	.	-	.	ID=Transcript:918805;Name=Transcript:918805;Parent=scaffold_100086.1
+scaffold_1	JGI_Filtered	three_prime_UTR	281840	281860	.	-	.	ID=three_prime_UTR:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	exon	281840	282030	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	281861	282030	.	-	0	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	exon	282111	282339	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	282111	282339	.	-	2	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	exon	282464	282796	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	282464	282796	.	-	0	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	exon	282977	283114	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	282977	283114	.	-	0	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	exon	283204	283333	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	283204	283333	.	-	0	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	exon	283561	283744	.	-	.	ID=exon:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	CDS	283561	283724	.	-	1	ID=CDS:918805;Parent=Transcript:918805;Name=scaffold_100086.1
+scaffold_1	JGI_Filtered	five_prime_UTR	283725	283744	.	-	.	ID=five_prime_UTR:918805;Parent=Transcript:918805
+scaffold_1	JGI_Filtered	gene	284339	286433	.	-	.	ID=fgenesh2_kg.1__78__AT1G01550.1;Name=fgenesh2_kg.1__78__AT1G01550.1
+scaffold_1	JGI_Filtered	mRNA	284339	286433	.	-	.	ID=Transcript:470124;Name=Transcript:470124;Parent=fgenesh2_kg.1__78__AT1G01550.1
+scaffold_1	JGI_Filtered	three_prime_UTR	284339	284402	.	-	.	ID=three_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	three_prime_UTR	284418	284501	.	-	.	ID=three_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	exon	284339	284402	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	exon	284418	285568	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	CDS	284502	285551	.	-	0	ID=CDS:470124;Parent=Transcript:470124;Name=fgenesh2_kg.1__78__AT1G01550.1
+scaffold_1	JGI_Filtered	exon	286134	286190	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	exon	286222	286234	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	exon	286256	286264	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	exon	286342	286433	.	-	.	ID=exon:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	five_prime_UTR	285552	285568	.	-	.	ID=five_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	five_prime_UTR	286134	286190	.	-	.	ID=five_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	five_prime_UTR	286222	286234	.	-	.	ID=five_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	five_prime_UTR	286256	286264	.	-	.	ID=five_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	five_prime_UTR	286342	286433	.	-	.	ID=five_prime_UTR:470124;Parent=Transcript:470124
+scaffold_1	JGI_Filtered	gene	287793	290675	.	-	.	ID=fgenesh2_kg.1__79__AT1G01540.2;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	mRNA	287793	290675	.	-	.	ID=Transcript:470125;Name=Transcript:470125;Parent=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	three_prime_UTR	287793	287833	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	287851	288049	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	288077	288201	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	288287	288496	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	288582	288711	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	288815	288985	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	289077	289199	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	three_prime_UTR	289283	289387	.	-	.	ID=three_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	exon	287793	287833	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	exon	287851	288049	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	exon	288077	288201	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	exon	288287	288496	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	288287	288496	.	-	0	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	exon	288582	288711	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	288582	288711	.	-	0	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	exon	288815	288985	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	288815	288985	.	-	1	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	exon	289077	289199	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	289077	289199	.	-	1	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	exon	289283	289387	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	289283	289387	.	-	1	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	exon	289905	290675	.	-	.	ID=exon:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	CDS	289905	290467	.	-	1	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	CDS	289905	288201	.	-	0	ID=CDS:470125;Parent=Transcript:470125;Name=fgenesh2_kg.1__79__AT1G01540.2
+scaffold_1	JGI_Filtered	five_prime_UTR	290468	290675	.	-	.	ID=five_prime_UTR:470125;Parent=Transcript:470125
+scaffold_1	JGI_Filtered	gene	291348	291764	.	-	.	ID=scaffold_100090.1;Name=scaffold_100090.1
+scaffold_1	JGI_Filtered	mRNA	291348	291764	.	-	.	ID=Transcript:918809;Name=Transcript:918809;Parent=scaffold_100090.1
+scaffold_1	JGI_Filtered	three_prime_UTR	291348	291367	.	-	.	ID=three_prime_UTR:918809;Parent=Transcript:918809
+scaffold_1	JGI_Filtered	exon	291348	291764	.	-	.	ID=exon:918809;Parent=Transcript:918809
+scaffold_1	JGI_Filtered	CDS	291368	291742	.	-	0	ID=CDS:918809;Parent=Transcript:918809;Name=scaffold_100090.1
+scaffold_1	JGI_Filtered	five_prime_UTR	291743	291764	.	-	.	ID=five_prime_UTR:918809;Parent=Transcript:918809
+scaffold_1	JGI_Filtered	gene	292057	292705	.	-	.	ID=fgenesh1_pg.C_scaffold_1000067;Name=fgenesh1_pg.C_scaffold_1000067
+scaffold_1	JGI_Filtered	mRNA	292057	292705	.	-	.	ID=Transcript:333502;Name=Transcript:333502;Parent=fgenesh1_pg.C_scaffold_1000067
+scaffold_1	JGI_Filtered	exon	292057	292110	.	-	.	ID=exon:333502;Parent=Transcript:333502
+scaffold_1	JGI_Filtered	CDS	292057	292110	.	-	0	ID=CDS:333502;Parent=Transcript:333502;Name=fgenesh1_pg.C_scaffold_1000067
+scaffold_1	JGI_Filtered	exon	292335	292494	.	-	.	ID=exon:333502;Parent=Transcript:333502
+scaffold_1	JGI_Filtered	CDS	292335	292494	.	-	0	ID=CDS:333502;Parent=Transcript:333502;Name=fgenesh1_pg.C_scaffold_1000067
+scaffold_1	JGI_Filtered	exon	292569	292705	.	-	.	ID=exon:333502;Parent=Transcript:333502
+scaffold_1	JGI_Filtered	CDS	292569	292705	.	-	1	ID=CDS:333502;Parent=Transcript:333502;Name=fgenesh1_pg.C_scaffold_1000067
+scaffold_1	JGI_Filtered	gene	294198	295303	.	+	.	ID=Al_scaffold_0001_74;Name=Al_scaffold_0001_74
+scaffold_1	JGI_Filtered	mRNA	294198	295303	.	+	.	ID=Transcript:909820;Name=Transcript:909820;Parent=Al_scaffold_0001_74
+scaffold_1	JGI_Filtered	exon	294198	294509	.	+	.	ID=exon:909820;Parent=Transcript:909820
+scaffold_1	JGI_Filtered	CDS	294198	294509	.	+	0	ID=CDS:909820;Parent=Transcript:909820;Name=Al_scaffold_0001_74
+scaffold_1	JGI_Filtered	exon	294872	295303	.	+	.	ID=exon:909820;Parent=Transcript:909820
+scaffold_1	JGI_Filtered	CDS	294872	295303	.	+	0	ID=CDS:909820;Parent=Transcript:909820;Name=Al_scaffold_0001_74
+scaffold_1	JGI_Filtered	gene	295990	304406	.	-	.	ID=fgenesh1_pm.C_scaffold_1000066;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	mRNA	295990	304406	.	-	.	ID=Transcript:311286;Name=Transcript:311286;Parent=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	295990	296022	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	295990	296022	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	296129	296188	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	296129	296188	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	296267	296376	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	296267	296376	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	296485	296601	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	296485	296601	.	-	2	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	296708	296849	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	296708	296849	.	-	2	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	296968	297025	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	296968	297025	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	297143	297399	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	297143	297399	.	-	1	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	297822	297910	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	297822	297910	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	298183	298231	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	298183	298231	.	-	2	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	298331	298444	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	298331	298444	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	298535	298582	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	298535	298582	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	298690	299481	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	298690	299481	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	299602	299732	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	299602	299732	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	299849	300014	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	299849	300014	.	-	2	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	300199	300802	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	300199	300802	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	303062	303285	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	303062	303285	.	-	1	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	exon	303654	304406	.	-	.	ID=exon:311286;Parent=Transcript:311286
+scaffold_1	JGI_Filtered	CDS	303654	304406	.	-	0	ID=CDS:311286;Parent=Transcript:311286;Name=fgenesh1_pm.C_scaffold_1000066
+scaffold_1	JGI_Filtered	gene	308924	310761	.	+	.	ID=scaffold_100095.1;Name=scaffold_100095.1
+scaffold_1	JGI_Filtered	mRNA	308924	310761	.	+	.	ID=Transcript:918814;Name=Transcript:918814;Parent=scaffold_100095.1
+scaffold_1	JGI_Filtered	five_prime_UTR	308924	308943	.	+	.	ID=five_prime_UTR:918814;Parent=Transcript:918814
+scaffold_1	JGI_Filtered	exon	308924	308949	.	+	.	ID=exon:918814;Parent=Transcript:918814
+scaffold_1	JGI_Filtered	CDS	308944	308949	.	+	0	ID=CDS:918814;Parent=Transcript:918814;Name=scaffold_100095.1
+scaffold_1	JGI_Filtered	exon	309646	309721	.	+	.	ID=exon:918814;Parent=Transcript:918814
+scaffold_1	JGI_Filtered	CDS	309646	309721	.	+	0	ID=CDS:918814;Parent=Transcript:918814;Name=scaffold_100095.1
+scaffold_1	JGI_Filtered	exon	310286	310761	.	+	.	ID=exon:918814;Parent=Transcript:918814
+scaffold_1	JGI_Filtered	CDS	310286	310737	.	+	1	ID=CDS:918814;Parent=Transcript:918814;Name=scaffold_100095.1
+scaffold_1	JGI_Filtered	three_prime_UTR	310738	310761	.	+	.	ID=three_prime_UTR:918814;Parent=Transcript:918814
+scaffold_1	JGI_Filtered	gene	313347	315496	.	-	.	ID=scaffold_100096.1;Name=scaffold_100096.1
+scaffold_1	JGI_Filtered	mRNA	313347	315496	.	-	.	ID=Transcript:918815;Name=Transcript:918815;Parent=scaffold_100096.1
+scaffold_1	JGI_Filtered	three_prime_UTR	313347	313367	.	-	.	ID=three_prime_UTR:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	exon	313347	314394	.	-	.	ID=exon:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	CDS	313368	314394	.	-	0	ID=CDS:918815;Parent=Transcript:918815;Name=scaffold_100096.1
+scaffold_1	JGI_Filtered	exon	314662	314822	.	-	.	ID=exon:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	CDS	314662	314822	.	-	1	ID=CDS:918815;Parent=Transcript:918815;Name=scaffold_100096.1
+scaffold_1	JGI_Filtered	exon	315054	315185	.	-	.	ID=exon:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	CDS	315054	315185	.	-	0	ID=CDS:918815;Parent=Transcript:918815;Name=scaffold_100096.1
+scaffold_1	JGI_Filtered	exon	315306	315496	.	-	.	ID=exon:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	CDS	315306	315476	.	-	0	ID=CDS:918815;Parent=Transcript:918815;Name=scaffold_100096.1
+scaffold_1	JGI_Filtered	five_prime_UTR	315477	315496	.	-	.	ID=five_prime_UTR:918815;Parent=Transcript:918815
+scaffold_1	JGI_Filtered	gene	318441	319257	.	+	.	ID=fgenesh1_pg.C_scaffold_1000073;Name=fgenesh1_pg.C_scaffold_1000073
+scaffold_1	JGI_Filtered	mRNA	318441	319257	.	+	.	ID=Transcript:333508;Name=Transcript:333508;Parent=fgenesh1_pg.C_scaffold_1000073
+scaffold_1	JGI_Filtered	exon	318441	318646	.	+	.	ID=exon:333508;Parent=Transcript:333508
+scaffold_1	JGI_Filtered	CDS	318441	318646	.	+	0	ID=CDS:333508;Parent=Transcript:333508;Name=fgenesh1_pg.C_scaffold_1000073
+scaffold_1	JGI_Filtered	exon	319008	319257	.	+	.	ID=exon:333508;Parent=Transcript:333508
+scaffold_1	JGI_Filtered	CDS	319008	319257	.	+	2	ID=CDS:333508;Parent=Transcript:333508;Name=fgenesh1_pg.C_scaffold_1000073
+scaffold_1	JGI_Filtered	gene	321884	322760	.	-	.	ID=Al_scaffold_0001_82;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	mRNA	321884	322760	.	-	.	ID=Transcript:909828;Name=Transcript:909828;Parent=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	exon	321884	321930	.	-	.	ID=exon:909828;Parent=Transcript:909828
+scaffold_1	JGI_Filtered	CDS	321884	321930	.	-	0	ID=CDS:909828;Parent=Transcript:909828;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	exon	322018	322117	.	-	.	ID=exon:909828;Parent=Transcript:909828
+scaffold_1	JGI_Filtered	CDS	322018	322117	.	-	2	ID=CDS:909828;Parent=Transcript:909828;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	exon	322200	322291	.	-	.	ID=exon:909828;Parent=Transcript:909828
+scaffold_1	JGI_Filtered	CDS	322200	322291	.	-	0	ID=CDS:909828;Parent=Transcript:909828;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	exon	322372	322501	.	-	.	ID=exon:909828;Parent=Transcript:909828
+scaffold_1	JGI_Filtered	CDS	322372	322501	.	-	2	ID=CDS:909828;Parent=Transcript:909828;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	exon	322572	322760	.	-	.	ID=exon:909828;Parent=Transcript:909828
+scaffold_1	JGI_Filtered	CDS	322572	322760	.	-	0	ID=CDS:909828;Parent=Transcript:909828;Name=Al_scaffold_0001_82
+scaffold_1	JGI_Filtered	gene	324353	326366	.	-	.	ID=fgenesh1_pm.C_scaffold_1000070;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	mRNA	324353	326366	.	-	.	ID=Transcript:311290;Name=Transcript:311290;Parent=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	324353	324656	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	324353	324656	.	-	0	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	324747	324885	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	324747	324885	.	-	1	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	324997	325089	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	324997	325089	.	-	2	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	325185	325232	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	325185	325232	.	-	2	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	325314	325405	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	325314	325405	.	-	2	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	325486	325673	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	325486	325673	.	-	1	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	325786	325896	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	325786	325896	.	-	0	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	325977	326139	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	325977	326139	.	-	0	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	exon	326224	326366	.	-	.	ID=exon:311290;Parent=Transcript:311290
+scaffold_1	JGI_Filtered	CDS	326224	326366	.	-	1	ID=CDS:311290;Parent=Transcript:311290;Name=fgenesh1_pm.C_scaffold_1000070
+scaffold_1	JGI_Filtered	gene	328181	328380	.	+	.	ID=scaffold_100100.1;Name=scaffold_100100.1
+scaffold_1	JGI_Filtered	mRNA	328181	328380	.	+	.	ID=Transcript:918819;Name=Transcript:918819;Parent=scaffold_100100.1
+scaffold_1	JGI_Filtered	five_prime_UTR	328181	328201	.	+	.	ID=five_prime_UTR:918819;Parent=Transcript:918819
+scaffold_1	JGI_Filtered	exon	328181	328380	.	+	.	ID=exon:918819;Parent=Transcript:918819
+scaffold_1	JGI_Filtered	CDS	328202	328360	.	+	0	ID=CDS:918819;Parent=Transcript:918819;Name=scaffold_100100.1
+scaffold_1	JGI_Filtered	three_prime_UTR	328361	328380	.	+	.	ID=three_prime_UTR:918819;Parent=Transcript:918819
+scaffold_1	JGI_Filtered	gene	330470	334264	.	+	.	ID=Al_scaffold_0001_84;Name=Al_scaffold_0001_84
+scaffold_1	JGI_Filtered	mRNA	330470	334264	.	+	.	ID=Transcript:909830;Name=Transcript:909830;Parent=Al_scaffold_0001_84
+scaffold_1	JGI_Filtered	exon	330470	331254	.	+	.	ID=exon:909830;Parent=Transcript:909830
+scaffold_1	JGI_Filtered	CDS	330470	331254	.	+	0	ID=CDS:909830;Parent=Transcript:909830;Name=Al_scaffold_0001_84
+scaffold_1	JGI_Filtered	exon	332070	334030	.	+	.	ID=exon:909830;Parent=Transcript:909830
+scaffold_1	JGI_Filtered	CDS	332070	334030	.	+	2	ID=CDS:909830;Parent=Transcript:909830;Name=Al_scaffold_0001_84
+scaffold_1	JGI_Filtered	exon	334098	334264	.	+	.	ID=exon:909830;Parent=Transcript:909830
+scaffold_1	JGI_Filtered	CDS	334098	334264	.	+	1	ID=CDS:909830;Parent=Transcript:909830;Name=Al_scaffold_0001_84
+scaffold_1	JGI_Filtered	gene	335605	336924	.	-	.	ID=fgenesh1_pg.C_scaffold_1000078;Name=fgenesh1_pg.C_scaffold_1000078
+scaffold_1	JGI_Filtered	mRNA	335605	336924	.	-	.	ID=Transcript:333513;Name=Transcript:333513;Parent=fgenesh1_pg.C_scaffold_1000078
+scaffold_1	JGI_Filtered	exon	335605	335733	.	-	.	ID=exon:333513;Parent=Transcript:333513
+scaffold_1	JGI_Filtered	CDS	335605	335733	.	-	0	ID=CDS:333513;Parent=Transcript:333513;Name=fgenesh1_pg.C_scaffold_1000078
+scaffold_1	JGI_Filtered	exon	336050	336431	.	-	.	ID=exon:333513;Parent=Transcript:333513
+scaffold_1	JGI_Filtered	CDS	336050	336431	.	-	0	ID=CDS:333513;Parent=Transcript:333513;Name=fgenesh1_pg.C_scaffold_1000078
+scaffold_1	JGI_Filtered	exon	336485	336924	.	-	.	ID=exon:333513;Parent=Transcript:333513
+scaffold_1	JGI_Filtered	CDS	336485	336924	.	-	1	ID=CDS:333513;Parent=Transcript:333513;Name=fgenesh1_pg.C_scaffold_1000078
+scaffold_1	JGI_Filtered	gene	339353	341720	.	+	.	ID=scaffold_100104.1;Name=scaffold_100104.1
+scaffold_1	JGI_Filtered	mRNA	339353	341720	.	+	.	ID=Transcript:918823;Name=Transcript:918823;Parent=scaffold_100104.1
+scaffold_1	JGI_Filtered	five_prime_UTR	339353	339379	.	+	.	ID=five_prime_UTR:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	exon	339353	341028	.	+	.	ID=exon:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	CDS	339380	341028	.	+	0	ID=CDS:918823;Parent=Transcript:918823;Name=scaffold_100104.1
+scaffold_1	JGI_Filtered	exon	341121	341181	.	+	.	ID=exon:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	CDS	341121	341181	.	+	2	ID=CDS:918823;Parent=Transcript:918823;Name=scaffold_100104.1
+scaffold_1	JGI_Filtered	exon	341325	341548	.	+	.	ID=exon:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	CDS	341325	341548	.	+	0	ID=CDS:918823;Parent=Transcript:918823;Name=scaffold_100104.1
+scaffold_1	JGI_Filtered	exon	341643	341720	.	+	.	ID=exon:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	CDS	341643	341700	.	+	2	ID=CDS:918823;Parent=Transcript:918823;Name=scaffold_100104.1
+scaffold_1	JGI_Filtered	three_prime_UTR	341701	341720	.	+	.	ID=three_prime_UTR:918823;Parent=Transcript:918823
+scaffold_1	JGI_Filtered	gene	343263	345197	.	+	.	ID=fgenesh2_kg.1__91__AT1G01430.1;Name=fgenesh2_kg.1__91__AT1G01430.1
+scaffold_1	JGI_Filtered	mRNA	343263	345197	.	+	.	ID=Transcript:470137;Name=Transcript:470137;Parent=fgenesh2_kg.1__91__AT1G01430.1
+scaffold_1	JGI_Filtered	five_prime_UTR	343263	343349	.	+	.	ID=five_prime_UTR:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	five_prime_UTR	343360	343372	.	+	.	ID=five_prime_UTR:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	exon	343263	343349	.	+	.	ID=exon:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	exon	343360	343637	.	+	.	ID=exon:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	CDS	343373	343637	.	+	0	ID=CDS:470137;Parent=Transcript:470137;Name=fgenesh2_kg.1__91__AT1G01430.1
+scaffold_1	JGI_Filtered	exon	343801	344084	.	+	.	ID=exon:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	CDS	343801	344084	.	+	1	ID=CDS:470137;Parent=Transcript:470137;Name=fgenesh2_kg.1__91__AT1G01430.1
+scaffold_1	JGI_Filtered	exon	344162	344972	.	+	.	ID=exon:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	CDS	344162	344959	.	+	0	ID=CDS:470137;Parent=Transcript:470137;Name=fgenesh2_kg.1__91__AT1G01430.1
+scaffold_1	JGI_Filtered	exon	345058	345197	.	+	.	ID=exon:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	three_prime_UTR	344960	344972	.	+	.	ID=three_prime_UTR:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	three_prime_UTR	345058	345197	.	+	.	ID=three_prime_UTR:470137;Parent=Transcript:470137
+scaffold_1	JGI_Filtered	gene	354524	356040	.	+	.	ID=fgenesh2_kg.1__92__AT1G01420.1;Name=fgenesh2_kg.1__92__AT1G01420.1
+scaffold_1	JGI_Filtered	mRNA	354524	356040	.	+	.	ID=Transcript:470138;Name=Transcript:470138;Parent=fgenesh2_kg.1__92__AT1G01420.1
+scaffold_1	JGI_Filtered	exon	354524	355756	.	+	.	ID=exon:470138;Parent=Transcript:470138
+scaffold_1	JGI_Filtered	CDS	354524	355756	.	+	0	ID=CDS:470138;Parent=Transcript:470138;Name=fgenesh2_kg.1__92__AT1G01420.1
+scaffold_1	JGI_Filtered	exon	355814	355948	.	+	.	ID=exon:470138;Parent=Transcript:470138
+scaffold_1	JGI_Filtered	CDS	355814	355948	.	+	0	ID=CDS:470138;Parent=Transcript:470138;Name=fgenesh2_kg.1__92__AT1G01420.1
+scaffold_1	JGI_Filtered	exon	355969	356040	.	+	.	ID=exon:470138;Parent=Transcript:470138
+scaffold_1	JGI_Filtered	three_prime_UTR	355969	356040	.	+	.	ID=three_prime_UTR:470138;Parent=Transcript:470138
+scaffold_1	JGI_Filtered	gene	356318	357400	.	-	.	ID=fgenesh2_kg.1__93__AT1G01410.1;Name=fgenesh2_kg.1__93__AT1G01410.1
+scaffold_1	JGI_Filtered	mRNA	356318	357400	.	-	.	ID=Transcript:470139;Name=Transcript:470139;Parent=fgenesh2_kg.1__93__AT1G01410.1
+scaffold_1	JGI_Filtered	three_prime_UTR	356318	357044	.	-	.	ID=three_prime_UTR:470139;Parent=Transcript:470139
+scaffold_1	JGI_Filtered	exon	356318	357044	.	-	.	ID=exon:470139;Parent=Transcript:470139
+scaffold_1	JGI_Filtered	exon	357072	357400	.	-	.	ID=exon:470139;Parent=Transcript:470139
+scaffold_1	JGI_Filtered	CDS	357072	357400	.	-	1	ID=CDS:470139;Parent=Transcript:470139;Name=fgenesh2_kg.1__93__AT1G01410.1
+scaffold_1	JGI_Filtered	CDS	357072	357044	.	-	0	ID=CDS:470139;Parent=Transcript:470139;Name=fgenesh2_kg.1__93__AT1G01410.1
+scaffold_1	JGI_Filtered	gene	359044	360465	.	+	.	ID=fgenesh1_pg.C_scaffold_1000083;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	mRNA	359044	360465	.	+	.	ID=Transcript:333518;Name=Transcript:333518;Parent=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	359044	359107	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	359044	359107	.	+	0	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	359198	359268	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	359198	359268	.	+	1	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	359353	359532	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	359353	359532	.	+	0	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	359625	359918	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	359625	359918	.	+	0	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	360006	360098	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	360006	360098	.	+	0	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	exon	360202	360465	.	+	.	ID=exon:333518;Parent=Transcript:333518
+scaffold_1	JGI_Filtered	CDS	360202	360465	.	+	0	ID=CDS:333518;Parent=Transcript:333518;Name=fgenesh1_pg.C_scaffold_1000083
+scaffold_1	JGI_Filtered	gene	362930	364545	.	+	.	ID=fgenesh2_kg.1__94__AT1G01390.1;Name=fgenesh2_kg.1__94__AT1G01390.1
+scaffold_1	JGI_Filtered	mRNA	362930	364545	.	+	.	ID=Transcript:470140;Name=Transcript:470140;Parent=fgenesh2_kg.1__94__AT1G01390.1
+scaffold_1	JGI_Filtered	five_prime_UTR	362930	362941	.	+	.	ID=five_prime_UTR:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	exon	362930	364384	.	+	.	ID=exon:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	CDS	362942	364384	.	+	0	ID=CDS:470140;Parent=Transcript:470140;Name=fgenesh2_kg.1__94__AT1G01390.1
+scaffold_1	JGI_Filtered	exon	364404	364418	.	+	.	ID=exon:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	exon	364431	364504	.	+	.	ID=exon:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	exon	364518	364545	.	+	.	ID=exon:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	three_prime_UTR	364404	364418	.	+	.	ID=three_prime_UTR:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	three_prime_UTR	364431	364504	.	+	.	ID=three_prime_UTR:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	three_prime_UTR	364518	364545	.	+	.	ID=three_prime_UTR:470140;Parent=Transcript:470140
+scaffold_1	JGI_Filtered	gene	365041	365523	.	-	.	ID=Al_scaffold_0001_92;Name=Al_scaffold_0001_92
+scaffold_1	JGI_Filtered	mRNA	365041	365523	.	-	.	ID=Transcript:909838;Name=Transcript:909838;Parent=Al_scaffold_0001_92
+scaffold_1	JGI_Filtered	exon	365041	365137	.	-	.	ID=exon:909838;Parent=Transcript:909838
+scaffold_1	JGI_Filtered	CDS	365041	365137	.	-	0	ID=CDS:909838;Parent=Transcript:909838;Name=Al_scaffold_0001_92
+scaffold_1	JGI_Filtered	exon	365248	365335	.	-	.	ID=exon:909838;Parent=Transcript:909838
+scaffold_1	JGI_Filtered	CDS	365248	365335	.	-	1	ID=CDS:909838;Parent=Transcript:909838;Name=Al_scaffold_0001_92
+scaffold_1	JGI_Filtered	exon	365457	365523	.	-	.	ID=exon:909838;Parent=Transcript:909838
+scaffold_1	JGI_Filtered	CDS	365457	365523	.	-	2	ID=CDS:909838;Parent=Transcript:909838;Name=Al_scaffold_0001_92
+scaffold_1	JGI_Filtered	gene	367696	369417	.	-	.	ID=Al_scaffold_0001_93;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	mRNA	367696	369417	.	-	.	ID=Transcript:909839;Name=Transcript:909839;Parent=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	three_prime_UTR	367696	367751	.	-	.	ID=three_prime_UTR:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	exon	367696	367751	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	exon	367891	367966	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	367891	367966	.	-	2	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	CDS	367891	367751	.	-	0	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	368107	368184	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	368107	368184	.	-	0	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	368601	368705	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	368601	368705	.	-	0	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	368908	368942	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	368908	368942	.	-	0	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	369064	369109	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	369064	369109	.	-	2	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	369210	369307	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	369210	369307	.	-	0	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	exon	369366	369417	.	-	.	ID=exon:909839;Parent=Transcript:909839
+scaffold_1	JGI_Filtered	CDS	369366	369417	.	-	2	ID=CDS:909839;Parent=Transcript:909839;Name=Al_scaffold_0001_93
+scaffold_1	JGI_Filtered	gene	370308	371114	.	-	.	ID=Al_scaffold_0001_94;Name=Al_scaffold_0001_94
+scaffold_1	JGI_Filtered	mRNA	370308	371114	.	-	.	ID=Transcript:909840;Name=Transcript:909840;Parent=Al_scaffold_0001_94
+scaffold_1	JGI_Filtered	exon	370308	370520	.	-	.	ID=exon:909840;Parent=Transcript:909840
+scaffold_1	JGI_Filtered	CDS	370308	370520	.	-	0	ID=CDS:909840;Parent=Transcript:909840;Name=Al_scaffold_0001_94
+scaffold_1	JGI_Filtered	exon	370615	370830	.	-	.	ID=exon:909840;Parent=Transcript:909840
+scaffold_1	JGI_Filtered	CDS	370615	370830	.	-	0	ID=CDS:909840;Parent=Transcript:909840;Name=Al_scaffold_0001_94
+scaffold_1	JGI_Filtered	exon	370971	371114	.	-	.	ID=exon:909840;Parent=Transcript:909840
+scaffold_1	JGI_Filtered	CDS	370971	371114	.	-	0	ID=CDS:909840;Parent=Transcript:909840;Name=Al_scaffold_0001_94
+scaffold_1	JGI_Filtered	gene	373723	374582	.	-	.	ID=scaffold_100113.1;Name=scaffold_100113.1
+scaffold_1	JGI_Filtered	mRNA	373723	374582	.	-	.	ID=Transcript:918832;Name=Transcript:918832;Parent=scaffold_100113.1
+scaffold_1	JGI_Filtered	three_prime_UTR	373723	373742	.	-	.	ID=three_prime_UTR:918832;Parent=Transcript:918832
+scaffold_1	JGI_Filtered	exon	373723	373764	.	-	.	ID=exon:918832;Parent=Transcript:918832
+scaffold_1	JGI_Filtered	CDS	373743	373764	.	-	0	ID=CDS:918832;Parent=Transcript:918832;Name=scaffold_100113.1
+scaffold_1	JGI_Filtered	exon	373971	374226	.	-	.	ID=exon:918832;Parent=Transcript:918832
+scaffold_1	JGI_Filtered	CDS	373971	374226	.	-	1	ID=CDS:918832;Parent=Transcript:918832;Name=scaffold_100113.1
+scaffold_1	JGI_Filtered	exon	374313	374582	.	-	.	ID=exon:918832;Parent=Transcript:918832
+scaffold_1	JGI_Filtered	CDS	374313	374562	.	-	2	ID=CDS:918832;Parent=Transcript:918832;Name=scaffold_100113.1
+scaffold_1	JGI_Filtered	five_prime_UTR	374563	374582	.	-	.	ID=five_prime_UTR:918832;Parent=Transcript:918832
+scaffold_1	JGI_Filtered	gene	374911	376187	.	-	.	ID=scaffold_100114.1;Name=scaffold_100114.1
+scaffold_1	JGI_Filtered	mRNA	374911	376187	.	-	.	ID=Transcript:918833;Name=Transcript:918833;Parent=scaffold_100114.1
+scaffold_1	JGI_Filtered	three_prime_UTR	374911	374930	.	-	.	ID=three_prime_UTR:918833;Parent=Transcript:918833
+scaffold_1	JGI_Filtered	exon	374911	375053	.	-	.	ID=exon:918833;Parent=Transcript:918833
+scaffold_1	JGI_Filtered	CDS	374931	375053	.	-	0	ID=CDS:918833;Parent=Transcript:918833;Name=scaffold_100114.1
+scaffold_1	JGI_Filtered	exon	375137	375957	.	-	.	ID=exon:918833;Parent=Transcript:918833
+scaffold_1	JGI_Filtered	CDS	375137	375957	.	-	0	ID=CDS:918833;Parent=Transcript:918833;Name=scaffold_100114.1
+scaffold_1	JGI_Filtered	exon	376078	376187	.	-	.	ID=exon:918833;Parent=Transcript:918833
+scaffold_1	JGI_Filtered	CDS	376078	376162	.	-	2	ID=CDS:918833;Parent=Transcript:918833;Name=scaffold_100114.1
+scaffold_1	JGI_Filtered	five_prime_UTR	376163	376187	.	-	.	ID=five_prime_UTR:918833;Parent=Transcript:918833
+scaffold_1	JGI_Filtered	gene	377570	380538	.	+	.	ID=fgenesh2_kg.1__95__AT1G01340.1;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	mRNA	377570	380538	.	+	.	ID=Transcript:470141;Name=Transcript:470141;Parent=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	five_prime_UTR	377570	377751	.	+	.	ID=five_prime_UTR:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	exon	377570	377751	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	exon	377764	378300	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	377764	378300	.	+	0	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	378373	378585	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	378373	378585	.	+	0	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	378668	378963	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	378668	378963	.	+	0	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	379173	379284	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	379173	379284	.	+	2	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	379362	379598	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	379362	379598	.	+	0	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	379694	380088	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	379694	380088	.	+	0	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	exon	380169	380538	.	+	.	ID=exon:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	CDS	380169	380499	.	+	2	ID=CDS:470141;Parent=Transcript:470141;Name=fgenesh2_kg.1__95__AT1G01340.1
+scaffold_1	JGI_Filtered	three_prime_UTR	380500	380538	.	+	.	ID=three_prime_UTR:470141;Parent=Transcript:470141
+scaffold_1	JGI_Filtered	gene	383180	383629	.	+	.	ID=scaffold_100116.1;Name=scaffold_100116.1
+scaffold_1	JGI_Filtered	mRNA	383180	383629	.	+	.	ID=Transcript:918835;Name=Transcript:918835;Parent=scaffold_100116.1
+scaffold_1	JGI_Filtered	five_prime_UTR	383180	383202	.	+	.	ID=five_prime_UTR:918835;Parent=Transcript:918835
+scaffold_1	JGI_Filtered	exon	383180	383240	.	+	.	ID=exon:918835;Parent=Transcript:918835
+scaffold_1	JGI_Filtered	CDS	383203	383240	.	+	0	ID=CDS:918835;Parent=Transcript:918835;Name=scaffold_100116.1
+scaffold_1	JGI_Filtered	exon	383288	383629	.	+	.	ID=exon:918835;Parent=Transcript:918835
+scaffold_1	JGI_Filtered	CDS	383288	383606	.	+	2	ID=CDS:918835;Parent=Transcript:918835;Name=scaffold_100116.1
+scaffold_1	JGI_Filtered	three_prime_UTR	383607	383629	.	+	.	ID=three_prime_UTR:918835;Parent=Transcript:918835
+scaffold_1	JGI_Filtered	gene	389375	398395	.	+	.	ID=fgenesh2_kg.1__96__AT1G01320.1;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	mRNA	389375	398395	.	+	.	ID=Transcript:470142;Name=Transcript:470142;Parent=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	389375	389435	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	389375	389435	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	389577	389638	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	389577	389638	.	+	1	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	390416	390508	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	390416	390508	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	390923	390995	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	390923	390995	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	391164	391448	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	391164	391448	.	+	1	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	391541	391608	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	391541	391608	.	+	1	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	391709	391840	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	391709	391840	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	391933	391974	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	391933	391974	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	392052	392573	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	392052	392573	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	392674	392825	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	392674	392825	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	392917	393430	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	392917	393430	.	+	2	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	393509	393571	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	393509	393571	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	393660	393761	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	393660	393761	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	393849	394175	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	393849	394175	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	394275	394367	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	394275	394367	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	394455	394580	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	394455	394580	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	394680	394784	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	394680	394784	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	394867	395000	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	394867	395000	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395105	395288	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395105	395288	.	+	2	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395385	395516	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395385	395516	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395611	395723	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395611	395723	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395758	395762	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395758	395762	.	+	2	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395789	395790	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395789	395790	.	+	1	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	395847	395930	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	395847	395930	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	396010	398007	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	CDS	396010	397917	.	+	0	ID=CDS:470142;Parent=Transcript:470142;Name=fgenesh2_kg.1__96__AT1G01320.1
+scaffold_1	JGI_Filtered	exon	398112	398395	.	+	.	ID=exon:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	three_prime_UTR	397918	398007	.	+	.	ID=three_prime_UTR:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	three_prime_UTR	398112	398395	.	+	.	ID=three_prime_UTR:470142;Parent=Transcript:470142
+scaffold_1	JGI_Filtered	gene	398516	399359	.	-	.	ID=fgenesh2_kg.1__97__AT1G01310.1;Name=fgenesh2_kg.1__97__AT1G01310.1
+scaffold_1	JGI_Filtered	mRNA	398516	399359	.	-	.	ID=Transcript:470143;Name=Transcript:470143;Parent=fgenesh2_kg.1__97__AT1G01310.1
+scaffold_1	JGI_Filtered	three_prime_UTR	398516	398569	.	-	.	ID=three_prime_UTR:470143;Parent=Transcript:470143
+scaffold_1	JGI_Filtered	exon	398516	399359	.	-	.	ID=exon:470143;Parent=Transcript:470143
+scaffold_1	JGI_Filtered	CDS	398570	399295	.	-	0	ID=CDS:470143;Parent=Transcript:470143;Name=fgenesh2_kg.1__97__AT1G01310.1
+scaffold_1	JGI_Filtered	five_prime_UTR	399296	399359	.	-	.	ID=five_prime_UTR:470143;Parent=Transcript:470143
+scaffold_1	JGI_Filtered	gene	399645	400107	.	-	.	ID=fgenesh2_kg.1__98__AT1G01305.1;Name=fgenesh2_kg.1__98__AT1G01305.1
+scaffold_1	JGI_Filtered	mRNA	399645	400107	.	-	.	ID=Transcript:470144;Name=Transcript:470144;Parent=fgenesh2_kg.1__98__AT1G01305.1
+scaffold_1	JGI_Filtered	three_prime_UTR	399645	399650	.	-	.	ID=three_prime_UTR:470144;Parent=Transcript:470144
+scaffold_1	JGI_Filtered	exon	399645	400107	.	-	.	ID=exon:470144;Parent=Transcript:470144
+scaffold_1	JGI_Filtered	CDS	399651	400076	.	-	0	ID=CDS:470144;Parent=Transcript:470144;Name=fgenesh2_kg.1__98__AT1G01305.1
+scaffold_1	JGI_Filtered	five_prime_UTR	400077	400107	.	-	.	ID=five_prime_UTR:470144;Parent=Transcript:470144
+scaffold_1	JGI_Filtered	gene	400727	402402	.	-	.	ID=fgenesh2_kg.1__99__AT1G01300.1;Name=fgenesh2_kg.1__99__AT1G01300.1
+scaffold_1	JGI_Filtered	mRNA	400727	402402	.	-	.	ID=Transcript:470145;Name=Transcript:470145;Parent=fgenesh2_kg.1__99__AT1G01300.1
+scaffold_1	JGI_Filtered	three_prime_UTR	400727	400853	.	-	.	ID=three_prime_UTR:470145;Parent=Transcript:470145
+scaffold_1	JGI_Filtered	three_prime_UTR	400879	400937	.	-	.	ID=three_prime_UTR:470145;Parent=Transcript:470145
+scaffold_1	JGI_Filtered	exon	400727	400853	.	-	.	ID=exon:470145;Parent=Transcript:470145
+scaffold_1	JGI_Filtered	exon	400879	402402	.	-	.	ID=exon:470145;Parent=Transcript:470145
+scaffold_1	JGI_Filtered	CDS	400938	402395	.	-	0	ID=CDS:470145;Parent=Transcript:470145;Name=fgenesh2_kg.1__99__AT1G01300.1
+scaffold_1	JGI_Filtered	five_prime_UTR	402396	402402	.	-	.	ID=five_prime_UTR:470145;Parent=Transcript:470145
+scaffold_1	JGI_Filtered	gene	404199	405288	.	-	.	ID=fgenesh1_pm.C_scaffold_1000085;Name=fgenesh1_pm.C_scaffold_1000085
+scaffold_1	JGI_Filtered	mRNA	404199	405288	.	-	.	ID=Transcript:311305;Name=Transcript:311305;Parent=fgenesh1_pm.C_scaffold_1000085
+scaffold_1	JGI_Filtered	exon	404199	404894	.	-	.	ID=exon:311305;Parent=Transcript:311305
+scaffold_1	JGI_Filtered	CDS	404199	404894	.	-	0	ID=CDS:311305;Parent=Transcript:311305;Name=fgenesh1_pm.C_scaffold_1000085
+scaffold_1	JGI_Filtered	exon	405154	405288	.	-	.	ID=exon:311305;Parent=Transcript:311305
+scaffold_1	JGI_Filtered	CDS	405154	405288	.	-	0	ID=CDS:311305;Parent=Transcript:311305;Name=fgenesh1_pm.C_scaffold_1000085
+scaffold_1	JGI_Filtered	gene	405437	407120	.	-	.	ID=fgenesh2_kg.1__100__AT1G01280.1;Name=fgenesh2_kg.1__100__AT1G01280.1
+scaffold_1	JGI_Filtered	mRNA	405437	407120	.	-	.	ID=Transcript:470146;Name=Transcript:470146;Parent=fgenesh2_kg.1__100__AT1G01280.1
+scaffold_1	JGI_Filtered	three_prime_UTR	405437	405457	.	-	.	ID=three_prime_UTR:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	exon	405437	405457	.	-	.	ID=exon:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	exon	405466	406107	.	-	.	ID=exon:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	CDS	405466	406107	.	-	0	ID=CDS:470146;Parent=Transcript:470146;Name=fgenesh2_kg.1__100__AT1G01280.1
+scaffold_1	JGI_Filtered	exon	406189	406574	.	-	.	ID=exon:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	CDS	406189	406574	.	-	0	ID=CDS:470146;Parent=Transcript:470146;Name=fgenesh2_kg.1__100__AT1G01280.1
+scaffold_1	JGI_Filtered	exon	406637	407120	.	-	.	ID=exon:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	CDS	406637	407093	.	-	2	ID=CDS:470146;Parent=Transcript:470146;Name=fgenesh2_kg.1__100__AT1G01280.1
+scaffold_1	JGI_Filtered	five_prime_UTR	407094	407120	.	-	.	ID=five_prime_UTR:470146;Parent=Transcript:470146
+scaffold_1	JGI_Filtered	gene	412556	415094	.	-	.	ID=fgenesh2_kg.1__101__AT1G01260.1;Name=fgenesh2_kg.1__101__AT1G01260.1
+scaffold_1	JGI_Filtered	mRNA	412556	415094	.	-	.	ID=Transcript:470147;Name=Transcript:470147;Parent=fgenesh2_kg.1__101__AT1G01260.1
+scaffold_1	JGI_Filtered	three_prime_UTR	412556	412760	.	-	.	ID=three_prime_UTR:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	exon	412556	414536	.	-	.	ID=exon:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	CDS	412761	414536	.	-	0	ID=CDS:470147;Parent=Transcript:470147;Name=fgenesh2_kg.1__101__AT1G01260.1
+scaffold_1	JGI_Filtered	exon	414739	414755	.	-	.	ID=exon:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	exon	414766	414843	.	-	.	ID=exon:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	exon	414860	414942	.	-	.	ID=exon:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	exon	414965	415094	.	-	.	ID=exon:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	five_prime_UTR	414739	414755	.	-	.	ID=five_prime_UTR:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	five_prime_UTR	414766	414843	.	-	.	ID=five_prime_UTR:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	five_prime_UTR	414860	414942	.	-	.	ID=five_prime_UTR:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	five_prime_UTR	414965	415094	.	-	.	ID=five_prime_UTR:470147;Parent=Transcript:470147
+scaffold_1	JGI_Filtered	gene	419014	419827	.	+	.	ID=fgenesh2_kg.1__103__AT1G01250.1;Name=fgenesh2_kg.1__103__AT1G01250.1
+scaffold_1	JGI_Filtered	mRNA	419014	419827	.	+	.	ID=Transcript:470149;Name=Transcript:470149;Parent=fgenesh2_kg.1__103__AT1G01250.1
+scaffold_1	JGI_Filtered	five_prime_UTR	419014	419024	.	+	.	ID=five_prime_UTR:470149;Parent=Transcript:470149
+scaffold_1	JGI_Filtered	exon	419014	419827	.	+	.	ID=exon:470149;Parent=Transcript:470149
+scaffold_1	JGI_Filtered	CDS	419025	419585	.	+	0	ID=CDS:470149;Parent=Transcript:470149;Name=fgenesh2_kg.1__103__AT1G01250.1
+scaffold_1	JGI_Filtered	three_prime_UTR	419586	419827	.	+	.	ID=three_prime_UTR:470149;Parent=Transcript:470149
+scaffold_1	JGI_Filtered	gene	422231	424117	.	-	.	ID=fgenesh2_kg.1__106__AT1G01240.3;Name=fgenesh2_kg.1__106__AT1G01240.3
+scaffold_1	JGI_Filtered	mRNA	422231	424117	.	-	.	ID=Transcript:470152;Name=Transcript:470152;Parent=fgenesh2_kg.1__106__AT1G01240.3
+scaffold_1	JGI_Filtered	three_prime_UTR	422231	422384	.	-	.	ID=three_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	exon	422231	423456	.	-	.	ID=exon:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	CDS	422385	423389	.	-	0	ID=CDS:470152;Parent=Transcript:470152;Name=fgenesh2_kg.1__106__AT1G01240.3
+scaffold_1	JGI_Filtered	exon	423490	423639	.	-	.	ID=exon:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	exon	423651	423680	.	-	.	ID=exon:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	exon	423700	424075	.	-	.	ID=exon:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	exon	424094	424117	.	-	.	ID=exon:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	five_prime_UTR	423390	423456	.	-	.	ID=five_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	five_prime_UTR	423490	423639	.	-	.	ID=five_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	five_prime_UTR	423651	423680	.	-	.	ID=five_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	five_prime_UTR	423700	424075	.	-	.	ID=five_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	five_prime_UTR	424094	424117	.	-	.	ID=five_prime_UTR:470152;Parent=Transcript:470152
+scaffold_1	JGI_Filtered	gene	425719	427483	.	-	.	ID=fgenesh2_kg.1__107__AT1G01230.1;Name=fgenesh2_kg.1__107__AT1G01230.1
+scaffold_1	JGI_Filtered	mRNA	425719	427483	.	-	.	ID=Transcript:470153;Name=Transcript:470153;Parent=fgenesh2_kg.1__107__AT1G01230.1
+scaffold_1	JGI_Filtered	three_prime_UTR	425719	425865	.	-	.	ID=three_prime_UTR:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	exon	425719	426004	.	-	.	ID=exon:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	CDS	425866	426004	.	-	0	ID=CDS:470153;Parent=Transcript:470153;Name=fgenesh2_kg.1__107__AT1G01230.1
+scaffold_1	JGI_Filtered	exon	426310	426458	.	-	.	ID=exon:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	CDS	426310	426458	.	-	1	ID=CDS:470153;Parent=Transcript:470153;Name=fgenesh2_kg.1__107__AT1G01230.1
+scaffold_1	JGI_Filtered	exon	427118	427349	.	-	.	ID=exon:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	CDS	427118	427303	.	-	0	ID=CDS:470153;Parent=Transcript:470153;Name=fgenesh2_kg.1__107__AT1G01230.1
+scaffold_1	JGI_Filtered	exon	427362	427483	.	-	.	ID=exon:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	five_prime_UTR	427304	427349	.	-	.	ID=five_prime_UTR:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	five_prime_UTR	427362	427483	.	-	.	ID=five_prime_UTR:470153;Parent=Transcript:470153
+scaffold_1	JGI_Filtered	gene	428322	429820	.	-	.	ID=fgenesh1_pm.C_scaffold_1000090;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	mRNA	428322	429820	.	-	.	ID=Transcript:311310;Name=Transcript:311310;Parent=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	428322	428585	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	428322	428585	.	-	0	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	428626	428658	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	428626	428658	.	-	0	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	428756	428845	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	428756	428845	.	-	0	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	429004	429047	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	429004	429047	.	-	0	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	429122	429185	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	429122	429185	.	-	2	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	429406	429557	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	429406	429557	.	-	0	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	exon	429721	429820	.	-	.	ID=exon:311310;Parent=Transcript:311310
+scaffold_1	JGI_Filtered	CDS	429721	429820	.	-	2	ID=CDS:311310;Parent=Transcript:311310;Name=fgenesh1_pm.C_scaffold_1000090
+scaffold_1	JGI_Filtered	gene	430280	431563	.	-	.	ID=fgenesh2_kg.1__108__AT1G01225.1;Name=fgenesh2_kg.1__108__AT1G01225.1
+scaffold_1	JGI_Filtered	mRNA	430280	431563	.	-	.	ID=Transcript:470154;Name=Transcript:470154;Parent=fgenesh2_kg.1__108__AT1G01225.1
+scaffold_1	JGI_Filtered	exon	430280	430953	.	-	.	ID=exon:470154;Parent=Transcript:470154
+scaffold_1	JGI_Filtered	CDS	430280	430953	.	-	0	ID=CDS:470154;Parent=Transcript:470154;Name=fgenesh2_kg.1__108__AT1G01225.1
+scaffold_1	JGI_Filtered	exon	431385	431563	.	-	.	ID=exon:470154;Parent=Transcript:470154
+scaffold_1	JGI_Filtered	CDS	431385	431478	.	-	2	ID=CDS:470154;Parent=Transcript:470154;Name=fgenesh2_kg.1__108__AT1G01225.1
+scaffold_1	JGI_Filtered	five_prime_UTR	431479	431563	.	-	.	ID=five_prime_UTR:470154;Parent=Transcript:470154
+scaffold_1	JGI_Filtered	gene	431965	435824	.	-	.	ID=fgenesh2_kg.1__109__AT1G01220.1;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	mRNA	431965	435824	.	-	.	ID=Transcript:470155;Name=Transcript:470155;Parent=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	three_prime_UTR	431965	432008	.	-	.	ID=three_prime_UTR:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	exon	431965	432008	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	exon	432064	432456	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	432064	432456	.	-	0	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	432543	433261	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	432543	433261	.	-	0	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	433345	434355	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	433345	434355	.	-	2	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	434452	434578	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	434452	434578	.	-	2	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	434691	435058	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	434691	435058	.	-	0	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	435142	435370	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	435142	435370	.	-	2	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	exon	435504	435824	.	-	.	ID=exon:470155;Parent=Transcript:470155
+scaffold_1	JGI_Filtered	CDS	435504	435824	.	-	0	ID=CDS:470155;Parent=Transcript:470155;Name=fgenesh2_kg.1__109__AT1G01220.1
+scaffold_1	JGI_Filtered	gene	436171	436800	.	-	.	ID=fgenesh1_pm.C_scaffold_1000093;Name=fgenesh1_pm.C_scaffold_1000093
+scaffold_1	JGI_Filtered	mRNA	436171	436800	.	-	.	ID=Transcript:311313;Name=Transcript:311313;Parent=fgenesh1_pm.C_scaffold_1000093
+scaffold_1	JGI_Filtered	exon	436171	436295	.	-	.	ID=exon:311313;Parent=Transcript:311313
+scaffold_1	JGI_Filtered	CDS	436171	436295	.	-	0	ID=CDS:311313;Parent=Transcript:311313;Name=fgenesh1_pm.C_scaffold_1000093
+scaffold_1	JGI_Filtered	exon	436491	436581	.	-	.	ID=exon:311313;Parent=Transcript:311313
+scaffold_1	JGI_Filtered	CDS	436491	436581	.	-	2	ID=CDS:311313;Parent=Transcript:311313;Name=fgenesh1_pm.C_scaffold_1000093
+scaffold_1	JGI_Filtered	exon	436696	436800	.	-	.	ID=exon:311313;Parent=Transcript:311313
+scaffold_1	JGI_Filtered	CDS	436696	436800	.	-	0	ID=CDS:311313;Parent=Transcript:311313;Name=fgenesh1_pm.C_scaffold_1000093
+scaffold_1	JGI_Filtered	gene	438129	439861	.	+	.	ID=fgenesh2_kg.1__110__AT1G01200.1;Name=fgenesh2_kg.1__110__AT1G01200.1
+scaffold_1	JGI_Filtered	mRNA	438129	439861	.	+	.	ID=Transcript:470156;Name=Transcript:470156;Parent=fgenesh2_kg.1__110__AT1G01200.1
+scaffold_1	JGI_Filtered	five_prime_UTR	438129	438203	.	+	.	ID=five_prime_UTR:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	exon	438129	438469	.	+	.	ID=exon:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	CDS	438204	438469	.	+	0	ID=CDS:470156;Parent=Transcript:470156;Name=fgenesh2_kg.1__110__AT1G01200.1
+scaffold_1	JGI_Filtered	exon	439221	439669	.	+	.	ID=exon:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	CDS	439221	439668	.	+	2	ID=CDS:470156;Parent=Transcript:470156;Name=fgenesh2_kg.1__110__AT1G01200.1
+scaffold_1	JGI_Filtered	exon	439703	439861	.	+	.	ID=exon:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	three_prime_UTR	439669	439669	.	+	.	ID=three_prime_UTR:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	three_prime_UTR	439703	439861	.	+	.	ID=three_prime_UTR:470156;Parent=Transcript:470156
+scaffold_1	JGI_Filtered	gene	441904	443720	.	+	.	ID=fgenesh1_pm.C_scaffold_1000095;Name=fgenesh1_pm.C_scaffold_1000095
+scaffold_1	JGI_Filtered	mRNA	441904	443720	.	+	.	ID=Transcript:311315;Name=Transcript:311315;Parent=fgenesh1_pm.C_scaffold_1000095
+scaffold_1	JGI_Filtered	exon	441904	442896	.	+	.	ID=exon:311315;Parent=Transcript:311315
+scaffold_1	JGI_Filtered	CDS	441904	442896	.	+	0	ID=CDS:311315;Parent=Transcript:311315;Name=fgenesh1_pm.C_scaffold_1000095
+scaffold_1	JGI_Filtered	exon	443094	443720	.	+	.	ID=exon:311315;Parent=Transcript:311315
+scaffold_1	JGI_Filtered	CDS	443094	443720	.	+	0	ID=CDS:311315;Parent=Transcript:311315;Name=fgenesh1_pm.C_scaffold_1000095
+scaffold_1	JGI_Filtered	gene	452377	453314	.	+	.	ID=Al_scaffold_0001_113;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	mRNA	452377	453314	.	+	.	ID=Transcript:909859;Name=Transcript:909859;Parent=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	452377	452416	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	452377	452416	.	+	0	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	452531	452573	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	452531	452573	.	+	1	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	452684	452726	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	452684	452726	.	+	2	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	452990	453034	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	452990	453034	.	+	0	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	453144	453187	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	453144	453187	.	+	0	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	exon	453296	453314	.	+	.	ID=exon:909859;Parent=Transcript:909859
+scaffold_1	JGI_Filtered	CDS	453296	453314	.	+	2	ID=CDS:909859;Parent=Transcript:909859;Name=Al_scaffold_0001_113
+scaffold_1	JGI_Filtered	gene	454219	455331	.	-	.	ID=Al_scaffold_0001_114;Name=Al_scaffold_0001_114
+scaffold_1	JGI_Filtered	mRNA	454219	455331	.	-	.	ID=Transcript:909860;Name=Transcript:909860;Parent=Al_scaffold_0001_114
+scaffold_1	JGI_Filtered	exon	454219	454242	.	-	.	ID=exon:909860;Parent=Transcript:909860
+scaffold_1	JGI_Filtered	CDS	454219	454242	.	-	0	ID=CDS:909860;Parent=Transcript:909860;Name=Al_scaffold_0001_114
+scaffold_1	JGI_Filtered	exon	454408	455331	.	-	.	ID=exon:909860;Parent=Transcript:909860
+scaffold_1	JGI_Filtered	CDS	454408	455331	.	-	0	ID=CDS:909860;Parent=Transcript:909860;Name=Al_scaffold_0001_114
+scaffold_1	JGI_Filtered	gene	457115	457459	.	+	.	ID=fgenesh1_pm.C_scaffold_1000097;Name=fgenesh1_pm.C_scaffold_1000097
+scaffold_1	JGI_Filtered	mRNA	457115	457459	.	+	.	ID=Transcript:311317;Name=Transcript:311317;Parent=fgenesh1_pm.C_scaffold_1000097
+scaffold_1	JGI_Filtered	exon	457115	457230	.	+	.	ID=exon:311317;Parent=Transcript:311317
+scaffold_1	JGI_Filtered	CDS	457115	457230	.	+	0	ID=CDS:311317;Parent=Transcript:311317;Name=fgenesh1_pm.C_scaffold_1000097
+scaffold_1	JGI_Filtered	exon	457276	457459	.	+	.	ID=exon:311317;Parent=Transcript:311317
+scaffold_1	JGI_Filtered	CDS	457276	457459	.	+	2	ID=CDS:311317;Parent=Transcript:311317;Name=fgenesh1_pm.C_scaffold_1000097
+scaffold_1	JGI_Filtered	gene	457529	459100	.	-	.	ID=scaffold_100135.1;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	mRNA	457529	459100	.	-	.	ID=Transcript:918854;Name=Transcript:918854;Parent=scaffold_100135.1
+scaffold_1	JGI_Filtered	three_prime_UTR	457529	457585	.	-	.	ID=three_prime_UTR:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	exon	457529	457722	.	-	.	ID=exon:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	CDS	457586	457722	.	-	0	ID=CDS:918854;Parent=Transcript:918854;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	exon	457828	458098	.	-	.	ID=exon:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	CDS	457828	458098	.	-	2	ID=CDS:918854;Parent=Transcript:918854;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	exon	458213	458321	.	-	.	ID=exon:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	CDS	458213	458321	.	-	0	ID=CDS:918854;Parent=Transcript:918854;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	exon	458456	458532	.	-	.	ID=exon:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	CDS	458456	458532	.	-	1	ID=CDS:918854;Parent=Transcript:918854;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	exon	458998	459100	.	-	.	ID=exon:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	CDS	458998	459078	.	-	0	ID=CDS:918854;Parent=Transcript:918854;Name=scaffold_100135.1
+scaffold_1	JGI_Filtered	five_prime_UTR	459079	459100	.	-	.	ID=five_prime_UTR:918854;Parent=Transcript:918854
+scaffold_1	JGI_Filtered	gene	459556	460824	.	+	.	ID=scaffold_100136.1;Name=scaffold_100136.1
+scaffold_1	JGI_Filtered	mRNA	459556	460824	.	+	.	ID=Transcript:918855;Name=Transcript:918855;Parent=scaffold_100136.1
+scaffold_1	JGI_Filtered	five_prime_UTR	459556	459577	.	+	.	ID=five_prime_UTR:918855;Parent=Transcript:918855
+scaffold_1	JGI_Filtered	exon	459556	459667	.	+	.	ID=exon:918855;Parent=Transcript:918855
+scaffold_1	JGI_Filtered	CDS	459578	459667	.	+	0	ID=CDS:918855;Parent=Transcript:918855;Name=scaffold_100136.1
+scaffold_1	JGI_Filtered	exon	459934	460584	.	+	.	ID=exon:918855;Parent=Transcript:918855
+scaffold_1	JGI_Filtered	CDS	459934	460584	.	+	0	ID=CDS:918855;Parent=Transcript:918855;Name=scaffold_100136.1
+scaffold_1	JGI_Filtered	exon	460664	460824	.	+	.	ID=exon:918855;Parent=Transcript:918855
+scaffold_1	JGI_Filtered	CDS	460664	460804	.	+	0	ID=CDS:918855;Parent=Transcript:918855;Name=scaffold_100136.1
+scaffold_1	JGI_Filtered	three_prime_UTR	460805	460824	.	+	.	ID=three_prime_UTR:918855;Parent=Transcript:918855
+scaffold_1	JGI_Filtered	gene	464358	467635	.	+	.	ID=fgenesh2_kg.1__115__AT1G01140.3;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	mRNA	464358	467635	.	+	.	ID=Transcript:470161;Name=Transcript:470161;Parent=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	five_prime_UTR	464358	464367	.	+	.	ID=five_prime_UTR:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	exon	464358	464559	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	464368	464559	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	464957	465019	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	464957	465019	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	465102	465173	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	465102	465173	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	465287	465394	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	465287	465394	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	465488	465568	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	465488	465568	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	465687	465740	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	465687	465740	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	465964	466089	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	465964	466089	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	466185	466274	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	466185	466274	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	466395	466520	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	466395	466520	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	466611	466718	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	466611	466718	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	466811	466927	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	466811	466927	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	467007	467063	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	467007	467063	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	467155	467235	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	467155	467235	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	467273	467277	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	467273	467277	.	+	0	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	467336	467509	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	CDS	467336	467414	.	+	2	ID=CDS:470161;Parent=Transcript:470161;Name=fgenesh2_kg.1__115__AT1G01140.3
+scaffold_1	JGI_Filtered	exon	467532	467541	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	exon	467567	467586	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	exon	467605	467635	.	+	.	ID=exon:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	three_prime_UTR	467415	467509	.	+	.	ID=three_prime_UTR:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	three_prime_UTR	467532	467541	.	+	.	ID=three_prime_UTR:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	three_prime_UTR	467567	467586	.	+	.	ID=three_prime_UTR:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	three_prime_UTR	467605	467635	.	+	.	ID=three_prime_UTR:470161;Parent=Transcript:470161
+scaffold_1	JGI_Filtered	gene	468909	469542	.	-	.	ID=Al_scaffold_0001_119;Name=Al_scaffold_0001_119
+scaffold_1	JGI_Filtered	mRNA	468909	469542	.	-	.	ID=Transcript:909865;Name=Transcript:909865;Parent=Al_scaffold_0001_119
+scaffold_1	JGI_Filtered	three_prime_UTR	468909	468953	.	-	.	ID=three_prime_UTR:909865;Parent=Transcript:909865
+scaffold_1	JGI_Filtered	three_prime_UTR	469304	469419	.	-	.	ID=three_prime_UTR:909865;Parent=Transcript:909865
+scaffold_1	JGI_Filtered	exon	468909	468953	.	-	.	ID=exon:909865;Parent=Transcript:909865
+scaffold_1	JGI_Filtered	exon	469304	469419	.	-	.	ID=exon:909865;Parent=Transcript:909865
+scaffold_1	JGI_Filtered	CDS	469304	469419	.	-	0	ID=CDS:909865;Parent=Transcript:909865;Name=Al_scaffold_0001_119
+scaffold_1	JGI_Filtered	exon	469506	469542	.	-	.	ID=exon:909865;Parent=Transcript:909865
+scaffold_1	JGI_Filtered	CDS	469506	469542	.	-	2	ID=CDS:909865;Parent=Transcript:909865;Name=Al_scaffold_0001_119
+scaffold_1	JGI_Filtered	CDS	469506	468953	.	-	0	ID=CDS:909865;Parent=Transcript:909865;Name=Al_scaffold_0001_119
+scaffold_1	JGI_Filtered	gene	470268	474739	.	+	.	ID=fgenesh1_pm.C_scaffold_1000101;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	mRNA	470268	474739	.	+	.	ID=Transcript:311321;Name=Transcript:311321;Parent=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	exon	470268	470657	.	+	.	ID=exon:311321;Parent=Transcript:311321
+scaffold_1	JGI_Filtered	CDS	470268	470657	.	+	0	ID=CDS:311321;Parent=Transcript:311321;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	exon	472524	472649	.	+	.	ID=exon:311321;Parent=Transcript:311321
+scaffold_1	JGI_Filtered	CDS	472524	472649	.	+	0	ID=CDS:311321;Parent=Transcript:311321;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	exon	473438	473494	.	+	.	ID=exon:311321;Parent=Transcript:311321
+scaffold_1	JGI_Filtered	CDS	473438	473494	.	+	0	ID=CDS:311321;Parent=Transcript:311321;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	exon	473856	473857	.	+	.	ID=exon:311321;Parent=Transcript:311321
+scaffold_1	JGI_Filtered	CDS	473856	473857	.	+	0	ID=CDS:311321;Parent=Transcript:311321;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	exon	474652	474739	.	+	.	ID=exon:311321;Parent=Transcript:311321
+scaffold_1	JGI_Filtered	CDS	474652	474739	.	+	2	ID=CDS:311321;Parent=Transcript:311321;Name=fgenesh1_pm.C_scaffold_1000101
+scaffold_1	JGI_Filtered	gene	475576	477203	.	+	.	ID=scaffold_100139.1;Name=scaffold_100139.1
+scaffold_1	JGI_Filtered	mRNA	475576	477203	.	+	.	ID=Transcript:918858;Name=Transcript:918858;Parent=scaffold_100139.1
+scaffold_1	JGI_Filtered	five_prime_UTR	475576	475596	.	+	.	ID=five_prime_UTR:918858;Parent=Transcript:918858
+scaffold_1	JGI_Filtered	exon	475576	477203	.	+	.	ID=exon:918858;Parent=Transcript:918858
+scaffold_1	JGI_Filtered	CDS	475597	477183	.	+	0	ID=CDS:918858;Parent=Transcript:918858;Name=scaffold_100139.1
+scaffold_1	JGI_Filtered	three_prime_UTR	477184	477203	.	+	.	ID=three_prime_UTR:918858;Parent=Transcript:918858
+scaffold_1	JGI_Filtered	gene	479138	481385	.	-	.	ID=fgenesh1_pg.C_scaffold_1000109;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	mRNA	479138	481385	.	-	.	ID=Transcript:333544;Name=Transcript:333544;Parent=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	exon	479138	479929	.	-	.	ID=exon:333544;Parent=Transcript:333544
+scaffold_1	JGI_Filtered	CDS	479138	479929	.	-	0	ID=CDS:333544;Parent=Transcript:333544;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	exon	480012	480152	.	-	.	ID=exon:333544;Parent=Transcript:333544
+scaffold_1	JGI_Filtered	CDS	480012	480152	.	-	0	ID=CDS:333544;Parent=Transcript:333544;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	exon	480456	480701	.	-	.	ID=exon:333544;Parent=Transcript:333544
+scaffold_1	JGI_Filtered	CDS	480456	480701	.	-	0	ID=CDS:333544;Parent=Transcript:333544;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	exon	480886	481182	.	-	.	ID=exon:333544;Parent=Transcript:333544
+scaffold_1	JGI_Filtered	CDS	480886	481182	.	-	0	ID=CDS:333544;Parent=Transcript:333544;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	exon	481278	481385	.	-	.	ID=exon:333544;Parent=Transcript:333544
+scaffold_1	JGI_Filtered	CDS	481278	481385	.	-	0	ID=CDS:333544;Parent=Transcript:333544;Name=fgenesh1_pg.C_scaffold_1000109
+scaffold_1	JGI_Filtered	gene	483425	484126	.	+	.	ID=fgenesh1_pm.C_scaffold_1000104;Name=fgenesh1_pm.C_scaffold_1000104
+scaffold_1	JGI_Filtered	mRNA	483425	484126	.	+	.	ID=Transcript:311324;Name=Transcript:311324;Parent=fgenesh1_pm.C_scaffold_1000104
+scaffold_1	JGI_Filtered	exon	483425	483496	.	+	.	ID=exon:311324;Parent=Transcript:311324
+scaffold_1	JGI_Filtered	CDS	483425	483496	.	+	0	ID=CDS:311324;Parent=Transcript:311324;Name=fgenesh1_pm.C_scaffold_1000104
+scaffold_1	JGI_Filtered	exon	483768	483983	.	+	.	ID=exon:311324;Parent=Transcript:311324
+scaffold_1	JGI_Filtered	CDS	483768	483983	.	+	0	ID=CDS:311324;Parent=Transcript:311324;Name=fgenesh1_pm.C_scaffold_1000104
+scaffold_1	JGI_Filtered	exon	484073	484126	.	+	.	ID=exon:311324;Parent=Transcript:311324
+scaffold_1	JGI_Filtered	CDS	484073	484126	.	+	0	ID=CDS:311324;Parent=Transcript:311324;Name=fgenesh1_pm.C_scaffold_1000104
+scaffold_1	JGI_Filtered	gene	485273	487146	.	+	.	ID=fgenesh2_kg.1__125__AT1G01090.1;Name=fgenesh2_kg.1__125__AT1G01090.1
+scaffold_1	JGI_Filtered	mRNA	485273	487146	.	+	.	ID=Transcript:470171;Name=Transcript:470171;Parent=fgenesh2_kg.1__125__AT1G01090.1
+scaffold_1	JGI_Filtered	five_prime_UTR	485273	485330	.	+	.	ID=five_prime_UTR:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	five_prime_UTR	485343	485360	.	+	.	ID=five_prime_UTR:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	exon	485273	485330	.	+	.	ID=exon:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	exon	485343	485603	.	+	.	ID=exon:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	CDS	485361	485603	.	+	0	ID=CDS:470171;Parent=Transcript:470171;Name=fgenesh2_kg.1__125__AT1G01090.1
+scaffold_1	JGI_Filtered	exon	485835	486612	.	+	.	ID=exon:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	CDS	485835	486612	.	+	0	ID=CDS:470171;Parent=Transcript:470171;Name=fgenesh2_kg.1__125__AT1G01090.1
+scaffold_1	JGI_Filtered	exon	486705	487146	.	+	.	ID=exon:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	CDS	486705	486982	.	+	1	ID=CDS:470171;Parent=Transcript:470171;Name=fgenesh2_kg.1__125__AT1G01090.1
+scaffold_1	JGI_Filtered	three_prime_UTR	486983	487146	.	+	.	ID=three_prime_UTR:470171;Parent=Transcript:470171
+scaffold_1	JGI_Filtered	gene	494740	496028	.	+	.	ID=Al_scaffold_0001_125;Name=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	mRNA	494740	496028	.	+	.	ID=Transcript:909871;Name=Transcript:909871;Parent=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	exon	494740	495168	.	+	.	ID=exon:909871;Parent=Transcript:909871
+scaffold_1	JGI_Filtered	CDS	494740	495168	.	+	0	ID=CDS:909871;Parent=Transcript:909871;Name=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	exon	495402	495503	.	+	.	ID=exon:909871;Parent=Transcript:909871
+scaffold_1	JGI_Filtered	CDS	495402	495503	.	+	0	ID=CDS:909871;Parent=Transcript:909871;Name=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	exon	495585	495893	.	+	.	ID=exon:909871;Parent=Transcript:909871
+scaffold_1	JGI_Filtered	CDS	495585	495893	.	+	0	ID=CDS:909871;Parent=Transcript:909871;Name=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	exon	495972	496028	.	+	.	ID=exon:909871;Parent=Transcript:909871
+scaffold_1	JGI_Filtered	CDS	495972	496028	.	+	0	ID=CDS:909871;Parent=Transcript:909871;Name=Al_scaffold_0001_125
+scaffold_1	JGI_Filtered	gene	501318	503489	.	+	.	ID=scaffold_100145.1;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	mRNA	501318	503489	.	+	.	ID=Transcript:918864;Name=Transcript:918864;Parent=scaffold_100145.1
+scaffold_1	JGI_Filtered	five_prime_UTR	501318	501338	.	+	.	ID=five_prime_UTR:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	exon	501318	501541	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	501339	501541	.	+	0	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	exon	501671	501733	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	501671	501733	.	+	2	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	exon	501923	502039	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	501923	502039	.	+	2	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	exon	502529	502928	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	502529	502928	.	+	2	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	exon	503056	503207	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	503056	503207	.	+	0	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	exon	503319	503489	.	+	.	ID=exon:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	CDS	503319	503469	.	+	2	ID=CDS:918864;Parent=Transcript:918864;Name=scaffold_100145.1
+scaffold_1	JGI_Filtered	three_prime_UTR	503470	503489	.	+	.	ID=three_prime_UTR:918864;Parent=Transcript:918864
+scaffold_1	JGI_Filtered	gene	504510	508725	.	+	.	ID=fgenesh2_kg.1__131__AT1G01060.3;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	mRNA	504510	508725	.	+	.	ID=Transcript:470177;Name=Transcript:470177;Parent=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	five_prime_UTR	504510	504622	.	+	.	ID=five_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	five_prime_UTR	504765	504790	.	+	.	ID=five_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	five_prime_UTR	504961	505102	.	+	.	ID=five_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	exon	504510	504622	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	exon	504765	504790	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	exon	504961	505141	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	505103	505141	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	505225	505336	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	505225	505336	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	505458	505519	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	505458	505519	.	+	1	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	506154	506387	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	506154	506387	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	506469	506549	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	506469	506549	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	506562	506566	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	506562	506566	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	506608	506613	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	506608	506613	.	+	2	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	506651	507695	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	506651	507695	.	+	2	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	507773	508118	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	CDS	507773	508108	.	+	0	ID=CDS:470177;Parent=Transcript:470177;Name=fgenesh2_kg.1__131__AT1G01060.3
+scaffold_1	JGI_Filtered	exon	508531	508654	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	exon	508695	508725	.	+	.	ID=exon:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	three_prime_UTR	508109	508118	.	+	.	ID=three_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	three_prime_UTR	508531	508654	.	+	.	ID=three_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	three_prime_UTR	508695	508725	.	+	.	ID=three_prime_UTR:470177;Parent=Transcript:470177
+scaffold_1	JGI_Filtered	gene	509479	510755	.	+	.	ID=Al_scaffold_0001_128;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	mRNA	509479	510755	.	+	.	ID=Transcript:909874;Name=Transcript:909874;Parent=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	509479	509602	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	509479	509602	.	+	0	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	509678	509706	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	509678	509706	.	+	1	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	509828	509893	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	509828	509893	.	+	0	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	509970	510077	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	509970	510077	.	+	0	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	510157	510222	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	510157	510222	.	+	0	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	510331	510451	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	510331	510451	.	+	0	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	510544	510625	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	510544	510625	.	+	1	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	exon	510713	510755	.	+	.	ID=exon:909874;Parent=Transcript:909874
+scaffold_1	JGI_Filtered	CDS	510713	510755	.	+	2	ID=CDS:909874;Parent=Transcript:909874;Name=Al_scaffold_0001_128
+scaffold_1	JGI_Filtered	gene	511272	518844	.	-	.	ID=fgenesh1_pg.C_scaffold_1000116;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	mRNA	511272	518844	.	-	.	ID=Transcript:333551;Name=Transcript:333551;Parent=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	511272	511449	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	511272	511449	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	511549	511955	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	511549	511955	.	-	1	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	512053	512217	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	512053	512217	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	512299	513204	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	512299	513204	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	513289	513479	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	513289	513479	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	513562	513659	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	513562	513659	.	-	2	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	513705	513884	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	513705	513884	.	-	1	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	513933	514561	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	513933	514561	.	-	1	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	514655	514750	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	514655	514750	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	514836	514997	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	514836	514997	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	515084	515266	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	515084	515266	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	515355	515505	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	515355	515505	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	515591	515824	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	515591	515824	.	-	1	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	515916	516076	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	515916	516076	.	-	1	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	516159	516281	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	516159	516281	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	516369	516541	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	516369	516541	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	516631	516850	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	516631	516850	.	-	2	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	516939	517333	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	516939	517333	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	517420	517630	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	517420	517630	.	-	2	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	517729	517842	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	517729	517842	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	exon	517933	518844	.	-	.	ID=exon:333551;Parent=Transcript:333551
+scaffold_1	JGI_Filtered	CDS	517933	518844	.	-	0	ID=CDS:333551;Parent=Transcript:333551;Name=fgenesh1_pg.C_scaffold_1000116
+scaffold_1	JGI_Filtered	gene	527878	530499	.	+	.	ID=fgenesh2_kg.1__134__AT1G01030.1;Name=fgenesh2_kg.1__134__AT1G01030.1
+scaffold_1	JGI_Filtered	mRNA	527878	530499	.	+	.	ID=Transcript:470180;Name=Transcript:470180;Parent=fgenesh2_kg.1__134__AT1G01030.1
+scaffold_1	JGI_Filtered	five_prime_UTR	527878	527920	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	five_prime_UTR	527931	528123	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	five_prime_UTR	528138	528276	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	five_prime_UTR	528435	528567	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	five_prime_UTR	528642	528687	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	five_prime_UTR	528701	528757	.	+	.	ID=five_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	527878	527920	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	527931	528123	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	528138	528276	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	528435	528567	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	528642	528687	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	exon	528701	529642	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	CDS	528758	529642	.	+	0	ID=CDS:470180;Parent=Transcript:470180;Name=fgenesh2_kg.1__134__AT1G01030.1
+scaffold_1	JGI_Filtered	exon	530097	530295	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	CDS	530097	530276	.	+	0	ID=CDS:470180;Parent=Transcript:470180;Name=fgenesh2_kg.1__134__AT1G01030.1
+scaffold_1	JGI_Filtered	exon	530326	530499	.	+	.	ID=exon:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	three_prime_UTR	530277	530295	.	+	.	ID=three_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	three_prime_UTR	530326	530499	.	+	.	ID=three_prime_UTR:470180;Parent=Transcript:470180
+scaffold_1	JGI_Filtered	gene	533525	535284	.	+	.	ID=fgenesh2_kg.1__135__AT1G01020.1;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	mRNA	533525	535284	.	+	.	ID=Transcript:470181;Name=Transcript:470181;Parent=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	five_prime_UTR	533525	533539	.	+	.	ID=five_prime_UTR:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	exon	533525	533635	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	533540	533635	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	533760	533807	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	533760	533807	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	533899	533988	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	533899	533988	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	534213	534258	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	534213	534258	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	534347	534420	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	534347	534420	.	+	1	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	534547	534632	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	534547	534632	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	534745	534811	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	534745	534811	.	+	2	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	534959	535034	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	534959	535034	.	+	0	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	exon	535116	535284	.	+	.	ID=exon:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	CDS	535116	535270	.	+	1	ID=CDS:470181;Parent=Transcript:470181;Name=fgenesh2_kg.1__135__AT1G01020.1
+scaffold_1	JGI_Filtered	three_prime_UTR	535271	535284	.	+	.	ID=three_prime_UTR:470181;Parent=Transcript:470181
+scaffold_1	JGI_Filtered	gene	535629	535835	.	+	.	ID=Al_scaffold_0001_132;Name=Al_scaffold_0001_132
+scaffold_1	JGI_Filtered	mRNA	535629	535835	.	+	.	ID=Transcript:909878;Name=Transcript:909878;Parent=Al_scaffold_0001_132
+scaffold_1	JGI_Filtered	exon	535629	535835	.	+	.	ID=exon:909878;Parent=Transcript:909878
+scaffold_1	JGI_Filtered	CDS	535629	535835	.	+	0	ID=CDS:909878;Parent=Transcript:909878;Name=Al_scaffold_0001_132
+scaffold_1	JGI_Filtered	gene	536480	538514	.	-	.	ID=fgenesh1_pg.C_scaffold_1000119;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	mRNA	536480	538514	.	-	.	ID=Transcript:333554;Name=Transcript:333554;Parent=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	536480	536686	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	536480	536686	.	-	0	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	536801	536968	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	536801	536968	.	-	0	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	537047	537514	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	537047	537514	.	-	0	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	537605	537724	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	537605	537724	.	-	0	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	537996	538279	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	537996	538279	.	-	0	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	exon	538364	538514	.	-	.	ID=exon:333554;Parent=Transcript:333554
+scaffold_1	JGI_Filtered	CDS	538364	538514	.	-	2	ID=CDS:333554;Parent=Transcript:333554;Name=fgenesh1_pg.C_scaffold_1000119
+scaffold_1	JGI_Filtered	gene	541678	542518	.	-	.	ID=Al_scaffold_0001_134;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	mRNA	541678	542518	.	-	.	ID=Transcript:909880;Name=Transcript:909880;Parent=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	exon	541678	541747	.	-	.	ID=exon:909880;Parent=Transcript:909880
+scaffold_1	JGI_Filtered	CDS	541678	541747	.	-	0	ID=CDS:909880;Parent=Transcript:909880;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	exon	541857	541892	.	-	.	ID=exon:909880;Parent=Transcript:909880
+scaffold_1	JGI_Filtered	CDS	541857	541892	.	-	1	ID=CDS:909880;Parent=Transcript:909880;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	exon	542020	542053	.	-	.	ID=exon:909880;Parent=Transcript:909880
+scaffold_1	JGI_Filtered	CDS	542020	542053	.	-	1	ID=CDS:909880;Parent=Transcript:909880;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	exon	542331	542364	.	-	.	ID=exon:909880;Parent=Transcript:909880
+scaffold_1	JGI_Filtered	CDS	542331	542364	.	-	2	ID=CDS:909880;Parent=Transcript:909880;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	exon	542492	542518	.	-	.	ID=exon:909880;Parent=Transcript:909880
+scaffold_1	JGI_Filtered	CDS	542492	542518	.	-	0	ID=CDS:909880;Parent=Transcript:909880;Name=Al_scaffold_0001_134
+scaffold_1	JGI_Filtered	gene	546617	548110	.	+	.	ID=Al_scaffold_0001_135;Name=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	mRNA	546617	548110	.	+	.	ID=Transcript:909881;Name=Transcript:909881;Parent=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	exon	546617	546758	.	+	.	ID=exon:909881;Parent=Transcript:909881
+scaffold_1	JGI_Filtered	CDS	546617	546758	.	+	0	ID=CDS:909881;Parent=Transcript:909881;Name=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	exon	546853	547142	.	+	.	ID=exon:909881;Parent=Transcript:909881
+scaffold_1	JGI_Filtered	CDS	546853	547142	.	+	1	ID=CDS:909881;Parent=Transcript:909881;Name=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	exon	547692	547760	.	+	.	ID=exon:909881;Parent=Transcript:909881
+scaffold_1	JGI_Filtered	CDS	547692	547760	.	+	0	ID=CDS:909881;Parent=Transcript:909881;Name=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	exon	548012	548110	.	+	.	ID=exon:909881;Parent=Transcript:909881
+scaffold_1	JGI_Filtered	CDS	548012	548110	.	+	0	ID=CDS:909881;Parent=Transcript:909881;Name=Al_scaffold_0001_135
+scaffold_1	JGI_Filtered	gene	548765	550572	.	-	.	ID=scaffold_100153.1;Name=scaffold_100153.1
+scaffold_1	JGI_Filtered	mRNA	548765	550572	.	-	.	ID=Transcript:918872;Name=Transcript:918872;Parent=scaffold_100153.1
+scaffold_1	JGI_Filtered	three_prime_UTR	548765	548934	.	-	.	ID=three_prime_UTR:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	three_prime_UTR	549358	549631	.	-	.	ID=three_prime_UTR:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	exon	548765	548934	.	-	.	ID=exon:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	exon	549358	549631	.	-	.	ID=exon:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	CDS	549358	549631	.	-	0	ID=CDS:918872;Parent=Transcript:918872;Name=scaffold_100153.1
+scaffold_1	JGI_Filtered	exon	549730	549903	.	-	.	ID=exon:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	CDS	549730	549903	.	-	1	ID=CDS:918872;Parent=Transcript:918872;Name=scaffold_100153.1
+scaffold_1	JGI_Filtered	CDS	549730	548934	.	-	0	ID=CDS:918872;Parent=Transcript:918872;Name=scaffold_100153.1
+scaffold_1	JGI_Filtered	exon	550545	550572	.	-	.	ID=exon:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	CDS	550545	550552	.	-	1	ID=CDS:918872;Parent=Transcript:918872;Name=scaffold_100153.1
+scaffold_1	JGI_Filtered	five_prime_UTR	550553	550572	.	-	.	ID=five_prime_UTR:918872;Parent=Transcript:918872
+scaffold_1	JGI_Filtered	gene	551918	553479	.	-	.	ID=fgenesh1_pm.C_scaffold_1000114;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	mRNA	551918	553479	.	-	.	ID=Transcript:311334;Name=Transcript:311334;Parent=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	551918	552115	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	551918	552115	.	-	0	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	552211	552333	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	552211	552333	.	-	0	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	552431	552685	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	552431	552685	.	-	0	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	552769	552915	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	552769	552915	.	-	0	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	552984	553240	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	552984	553240	.	-	0	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	exon	553326	553479	.	-	.	ID=exon:311334;Parent=Transcript:311334
+scaffold_1	JGI_Filtered	CDS	553326	553479	.	-	2	ID=CDS:311334;Parent=Transcript:311334;Name=fgenesh1_pm.C_scaffold_1000114
+scaffold_1	JGI_Filtered	gene	555254	556901	.	-	.	ID=Al_scaffold_0001_137;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	mRNA	555254	556901	.	-	.	ID=Transcript:909883;Name=Transcript:909883;Parent=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	555254	555403	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	555254	555403	.	-	0	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	555531	555650	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	555531	555650	.	-	0	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	555737	556000	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	555737	556000	.	-	0	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	556090	556221	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	556090	556221	.	-	0	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	556405	556667	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	556405	556667	.	-	0	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	exon	556748	556901	.	-	.	ID=exon:909883;Parent=Transcript:909883
+scaffold_1	JGI_Filtered	CDS	556748	556901	.	-	2	ID=CDS:909883;Parent=Transcript:909883;Name=Al_scaffold_0001_137
+scaffold_1	JGI_Filtered	gene	558177	558994	.	-	.	ID=fgenesh1_pg.C_scaffold_1000123;Name=fgenesh1_pg.C_scaffold_1000123
+scaffold_1	JGI_Filtered	mRNA	558177	558994	.	-	.	ID=Transcript:333558;Name=Transcript:333558;Parent=fgenesh1_pg.C_scaffold_1000123
+scaffold_1	JGI_Filtered	exon	558177	558272	.	-	.	ID=exon:333558;Parent=Transcript:333558
+scaffold_1	JGI_Filtered	CDS	558177	558272	.	-	0	ID=CDS:333558;Parent=Transcript:333558;Name=fgenesh1_pg.C_scaffold_1000123
+scaffold_1	JGI_Filtered	exon	558349	558749	.	-	.	ID=exon:333558;Parent=Transcript:333558
+scaffold_1	JGI_Filtered	CDS	558349	558749	.	-	0	ID=CDS:333558;Parent=Transcript:333558;Name=fgenesh1_pg.C_scaffold_1000123
+scaffold_1	JGI_Filtered	exon	558841	558994	.	-	.	ID=exon:333558;Parent=Transcript:333558
+scaffold_1	JGI_Filtered	CDS	558841	558994	.	-	2	ID=CDS:333558;Parent=Transcript:333558;Name=fgenesh1_pg.C_scaffold_1000123
+scaffold_1	JGI_Filtered	gene	560362	562206	.	-	.	ID=fgenesh2_kg.1__141__AT1G02260.1;Name=fgenesh2_kg.1__141__AT1G02260.1
+scaffold_1	JGI_Filtered	mRNA	560362	562206	.	-	.	ID=Transcript:470187;Name=Transcript:470187;Parent=fgenesh2_kg.1__141__AT1G02260.1
+scaffold_1	JGI_Filtered	three_prime_UTR	560362	560403	.	-	.	ID=three_prime_UTR:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	three_prime_UTR	560430	560439	.	-	.	ID=three_prime_UTR:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	three_prime_UTR	560459	560491	.	-	.	ID=three_prime_UTR:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	exon	560362	560403	.	-	.	ID=exon:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	exon	560430	560439	.	-	.	ID=exon:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	exon	560459	560748	.	-	.	ID=exon:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	CDS	560492	560748	.	-	0	ID=CDS:470187;Parent=Transcript:470187;Name=fgenesh2_kg.1__141__AT1G02260.1
+scaffold_1	JGI_Filtered	exon	560870	561059	.	-	.	ID=exon:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	CDS	560870	561059	.	-	2	ID=CDS:470187;Parent=Transcript:470187;Name=fgenesh2_kg.1__141__AT1G02260.1
+scaffold_1	JGI_Filtered	exon	561149	562206	.	-	.	ID=exon:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	CDS	561149	562201	.	-	0	ID=CDS:470187;Parent=Transcript:470187;Name=fgenesh2_kg.1__141__AT1G02260.1
+scaffold_1	JGI_Filtered	five_prime_UTR	562202	562206	.	-	.	ID=five_prime_UTR:470187;Parent=Transcript:470187
+scaffold_1	JGI_Filtered	gene	562997	566008	.	-	.	ID=fgenesh2_kg.1__142__AT1G02270.1;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	mRNA	562997	566008	.	-	.	ID=Transcript:470188;Name=Transcript:470188;Parent=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	three_prime_UTR	562997	563058	.	-	.	ID=three_prime_UTR:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	exon	562997	563283	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	563059	563283	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	563386	563493	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	563386	563493	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	563746	563856	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	563746	563856	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	564001	564126	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	564001	564126	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	564236	564344	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	564236	564344	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	564431	564507	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	564431	564507	.	-	1	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	564600	564820	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	564600	564820	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	565222	565327	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	565222	565327	.	-	2	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	565420	565524	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	565420	565524	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	565603	565701	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	565603	565701	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	565787	565966	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	CDS	565787	565954	.	-	0	ID=CDS:470188;Parent=Transcript:470188;Name=fgenesh2_kg.1__142__AT1G02270.1
+scaffold_1	JGI_Filtered	exon	565985	566008	.	-	.	ID=exon:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	five_prime_UTR	565955	565966	.	-	.	ID=five_prime_UTR:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	five_prime_UTR	565985	566008	.	-	.	ID=five_prime_UTR:470188;Parent=Transcript:470188
+scaffold_1	JGI_Filtered	gene	571279	572890	.	-	.	ID=fgenesh1_pm.C_scaffold_1000118;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	mRNA	571279	572890	.	-	.	ID=Transcript:311338;Name=Transcript:311338;Parent=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	571279	571347	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	571279	571347	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	571427	571588	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	571427	571588	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	571666	571734	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	571666	571734	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	571835	572099	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	571835	572099	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	572353	572477	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	572353	572477	.	-	1	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	572583	572690	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	572583	572690	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	exon	572795	572890	.	-	.	ID=exon:311338;Parent=Transcript:311338
+scaffold_1	JGI_Filtered	CDS	572795	572890	.	-	0	ID=CDS:311338;Parent=Transcript:311338;Name=fgenesh1_pm.C_scaffold_1000118
+scaffold_1	JGI_Filtered	gene	573275	574678	.	-	.	ID=scaffold_100160.1;Name=scaffold_100160.1
+scaffold_1	JGI_Filtered	mRNA	573275	574678	.	-	.	ID=Transcript:918879;Name=Transcript:918879;Parent=scaffold_100160.1
+scaffold_1	JGI_Filtered	three_prime_UTR	573275	573294	.	-	.	ID=three_prime_UTR:918879;Parent=Transcript:918879
+scaffold_1	JGI_Filtered	exon	573275	574678	.	-	.	ID=exon:918879;Parent=Transcript:918879
+scaffold_1	JGI_Filtered	CDS	573295	574656	.	-	0	ID=CDS:918879;Parent=Transcript:918879;Name=scaffold_100160.1
+scaffold_1	JGI_Filtered	five_prime_UTR	574657	574678	.	-	.	ID=five_prime_UTR:918879;Parent=Transcript:918879
+scaffold_1	JGI_Filtered	gene	575814	577930	.	+	.	ID=scaffold_100161.1;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	mRNA	575814	577930	.	+	.	ID=Transcript:918880;Name=Transcript:918880;Parent=scaffold_100161.1
+scaffold_1	JGI_Filtered	five_prime_UTR	575814	575833	.	+	.	ID=five_prime_UTR:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	exon	575814	575911	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	575834	575911	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576124	576177	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576124	576177	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576260	576340	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576260	576340	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576425	576581	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576425	576581	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576686	576690	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576686	576690	.	+	1	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576773	576847	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576773	576847	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	576938	577063	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	576938	577063	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	577153	577371	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	577153	577371	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	577445	577558	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	577445	577558	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	577646	577681	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	577646	577681	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	exon	577774	577930	.	+	.	ID=exon:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	CDS	577774	577908	.	+	0	ID=CDS:918880;Parent=Transcript:918880;Name=scaffold_100161.1
+scaffold_1	JGI_Filtered	three_prime_UTR	577909	577930	.	+	.	ID=three_prime_UTR:918880;Parent=Transcript:918880
+scaffold_1	JGI_Filtered	gene	578374	580449	.	+	.	ID=scaffold_100162.1;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	mRNA	578374	580449	.	+	.	ID=Transcript:918881;Name=Transcript:918881;Parent=scaffold_100162.1
+scaffold_1	JGI_Filtered	five_prime_UTR	578374	578393	.	+	.	ID=five_prime_UTR:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	exon	578374	578474	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	578394	578474	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	578602	578655	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	578602	578655	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	578739	578819	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	578739	578819	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	578910	579066	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	578910	579066	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	579176	579180	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	579176	579180	.	+	1	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	579263	579337	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	579263	579337	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	579430	579555	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	579430	579555	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	579644	579862	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	579644	579862	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	579944	580057	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	579944	580057	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	580148	580183	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	580148	580183	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	exon	580293	580449	.	+	.	ID=exon:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	CDS	580293	580427	.	+	0	ID=CDS:918881;Parent=Transcript:918881;Name=scaffold_100162.1
+scaffold_1	JGI_Filtered	three_prime_UTR	580428	580449	.	+	.	ID=three_prime_UTR:918881;Parent=Transcript:918881
+scaffold_1	JGI_Filtered	gene	580593	583503	.	-	.	ID=fgenesh2_kg.1__146__AT1G02310.1;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	mRNA	580593	583503	.	-	.	ID=Transcript:470192;Name=Transcript:470192;Parent=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	three_prime_UTR	580593	580669	.	-	.	ID=three_prime_UTR:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	three_prime_UTR	580692	580707	.	-	.	ID=three_prime_UTR:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	exon	580593	580669	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	exon	580692	581101	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	CDS	580708	581101	.	-	0	ID=CDS:470192;Parent=Transcript:470192;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	exon	581199	581407	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	CDS	581199	581407	.	-	1	ID=CDS:470192;Parent=Transcript:470192;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	exon	581820	581939	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	CDS	581820	581939	.	-	0	ID=CDS:470192;Parent=Transcript:470192;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	exon	582310	582489	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	CDS	582310	582489	.	-	0	ID=CDS:470192;Parent=Transcript:470192;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	exon	583123	583503	.	-	.	ID=exon:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	CDS	583123	583452	.	-	0	ID=CDS:470192;Parent=Transcript:470192;Name=fgenesh2_kg.1__146__AT1G02310.1
+scaffold_1	JGI_Filtered	five_prime_UTR	583453	583503	.	-	.	ID=five_prime_UTR:470192;Parent=Transcript:470192
+scaffold_1	JGI_Filtered	gene	584904	586271	.	-	.	ID=scaffold_100164.1;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	mRNA	584904	586271	.	-	.	ID=Transcript:918883;Name=Transcript:918883;Parent=scaffold_100164.1
+scaffold_1	JGI_Filtered	three_prime_UTR	584904	584923	.	-	.	ID=three_prime_UTR:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	exon	584904	585102	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	584924	585102	.	-	0	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	exon	585199	585356	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	585199	585356	.	-	2	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	exon	585447	585520	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	585447	585520	.	-	1	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	exon	585613	585736	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	585613	585736	.	-	0	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	exon	585842	586039	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	585842	586039	.	-	1	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	exon	586151	586271	.	-	.	ID=exon:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	CDS	586151	586251	.	-	1	ID=CDS:918883;Parent=Transcript:918883;Name=scaffold_100164.1
+scaffold_1	JGI_Filtered	five_prime_UTR	586252	586271	.	-	.	ID=five_prime_UTR:918883;Parent=Transcript:918883
+scaffold_1	JGI_Filtered	gene	586907	588010	.	-	.	ID=fgenesh2_kg.1__148__AT1G02335.1;Name=fgenesh2_kg.1__148__AT1G02335.1
+scaffold_1	JGI_Filtered	mRNA	586907	588010	.	-	.	ID=Transcript:470194;Name=Transcript:470194;Parent=fgenesh2_kg.1__148__AT1G02335.1
+scaffold_1	JGI_Filtered	three_prime_UTR	586907	587000	.	-	.	ID=three_prime_UTR:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	three_prime_UTR	587013	587049	.	-	.	ID=three_prime_UTR:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	exon	586907	587000	.	-	.	ID=exon:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	exon	587013	587594	.	-	.	ID=exon:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	CDS	587050	587594	.	-	0	ID=CDS:470194;Parent=Transcript:470194;Name=fgenesh2_kg.1__148__AT1G02335.1
+scaffold_1	JGI_Filtered	exon	587853	588010	.	-	.	ID=exon:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	CDS	587853	587964	.	-	2	ID=CDS:470194;Parent=Transcript:470194;Name=fgenesh2_kg.1__148__AT1G02335.1
+scaffold_1	JGI_Filtered	five_prime_UTR	587965	588010	.	-	.	ID=five_prime_UTR:470194;Parent=Transcript:470194
+scaffold_1	JGI_Filtered	gene	589088	590693	.	-	.	ID=fgenesh1_pg.C_scaffold_1000130;Name=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	mRNA	589088	590693	.	-	.	ID=Transcript:333565;Name=Transcript:333565;Parent=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	exon	589088	589402	.	-	.	ID=exon:333565;Parent=Transcript:333565
+scaffold_1	JGI_Filtered	CDS	589088	589402	.	-	0	ID=CDS:333565;Parent=Transcript:333565;Name=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	exon	589931	589996	.	-	.	ID=exon:333565;Parent=Transcript:333565
+scaffold_1	JGI_Filtered	CDS	589931	589996	.	-	0	ID=CDS:333565;Parent=Transcript:333565;Name=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	exon	590149	590274	.	-	.	ID=exon:333565;Parent=Transcript:333565
+scaffold_1	JGI_Filtered	CDS	590149	590274	.	-	0	ID=CDS:333565;Parent=Transcript:333565;Name=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	exon	590361	590693	.	-	.	ID=exon:333565;Parent=Transcript:333565
+scaffold_1	JGI_Filtered	CDS	590361	590693	.	-	0	ID=CDS:333565;Parent=Transcript:333565;Name=fgenesh1_pg.C_scaffold_1000130
+scaffold_1	JGI_Filtered	gene	594032	595496	.	+	.	ID=fgenesh1_pg.C_scaffold_1000131;Name=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	mRNA	594032	595496	.	+	.	ID=Transcript:333566;Name=Transcript:333566;Parent=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	exon	594032	594120	.	+	.	ID=exon:333566;Parent=Transcript:333566
+scaffold_1	JGI_Filtered	CDS	594032	594120	.	+	0	ID=CDS:333566;Parent=Transcript:333566;Name=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	exon	594739	594825	.	+	.	ID=exon:333566;Parent=Transcript:333566
+scaffold_1	JGI_Filtered	CDS	594739	594825	.	+	2	ID=CDS:333566;Parent=Transcript:333566;Name=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	exon	595015	595096	.	+	.	ID=exon:333566;Parent=Transcript:333566
+scaffold_1	JGI_Filtered	CDS	595015	595096	.	+	2	ID=CDS:333566;Parent=Transcript:333566;Name=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	exon	595308	595496	.	+	.	ID=exon:333566;Parent=Transcript:333566
+scaffold_1	JGI_Filtered	CDS	595308	595496	.	+	0	ID=CDS:333566;Parent=Transcript:333566;Name=fgenesh1_pg.C_scaffold_1000131
+scaffold_1	JGI_Filtered	gene	595629	595881	.	-	.	ID=scaffold_100168.1;Name=scaffold_100168.1
+scaffold_1	JGI_Filtered	mRNA	595629	595881	.	-	.	ID=Transcript:918887;Name=Transcript:918887;Parent=scaffold_100168.1
+scaffold_1	JGI_Filtered	three_prime_UTR	595629	595649	.	-	.	ID=three_prime_UTR:918887;Parent=Transcript:918887
+scaffold_1	JGI_Filtered	exon	595629	595881	.	-	.	ID=exon:918887;Parent=Transcript:918887
+scaffold_1	JGI_Filtered	CDS	595650	595859	.	-	0	ID=CDS:918887;Parent=Transcript:918887;Name=scaffold_100168.1
+scaffold_1	JGI_Filtered	five_prime_UTR	595860	595881	.	-	.	ID=five_prime_UTR:918887;Parent=Transcript:918887
+scaffold_1	JGI_Filtered	gene	596769	597999	.	-	.	ID=scaffold_100169.1;Name=scaffold_100169.1
+scaffold_1	JGI_Filtered	mRNA	596769	597999	.	-	.	ID=Transcript:918888;Name=Transcript:918888;Parent=scaffold_100169.1
+scaffold_1	JGI_Filtered	three_prime_UTR	596769	596788	.	-	.	ID=three_prime_UTR:918888;Parent=Transcript:918888
+scaffold_1	JGI_Filtered	exon	596769	597158	.	-	.	ID=exon:918888;Parent=Transcript:918888
+scaffold_1	JGI_Filtered	CDS	596789	597158	.	-	0	ID=CDS:918888;Parent=Transcript:918888;Name=scaffold_100169.1
+scaffold_1	JGI_Filtered	exon	597534	597999	.	-	.	ID=exon:918888;Parent=Transcript:918888
+scaffold_1	JGI_Filtered	CDS	597534	597979	.	-	1	ID=CDS:918888;Parent=Transcript:918888;Name=scaffold_100169.1
+scaffold_1	JGI_Filtered	five_prime_UTR	597980	597999	.	-	.	ID=five_prime_UTR:918888;Parent=Transcript:918888
+scaffold_1	JGI_Filtered	gene	599259	601154	.	+	.	ID=fgenesh2_kg.1__150__AT1G02370.1;Name=fgenesh2_kg.1__150__AT1G02370.1
+scaffold_1	JGI_Filtered	mRNA	599259	601154	.	+	.	ID=Transcript:470196;Name=Transcript:470196;Parent=fgenesh2_kg.1__150__AT1G02370.1
+scaffold_1	JGI_Filtered	five_prime_UTR	599259	599266	.	+	.	ID=five_prime_UTR:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	exon	599259	599353	.	+	.	ID=exon:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	CDS	599267	599353	.	+	0	ID=CDS:470196;Parent=Transcript:470196;Name=fgenesh2_kg.1__150__AT1G02370.1
+scaffold_1	JGI_Filtered	exon	599354	599599	.	+	.	ID=exon:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	CDS	599354	599599	.	+	0	ID=CDS:470196;Parent=Transcript:470196;Name=fgenesh2_kg.1__150__AT1G02370.1
+scaffold_1	JGI_Filtered	exon	599766	601012	.	+	.	ID=exon:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	CDS	599766	601007	.	+	0	ID=CDS:470196;Parent=Transcript:470196;Name=fgenesh2_kg.1__150__AT1G02370.1
+scaffold_1	JGI_Filtered	exon	601027	601124	.	+	.	ID=exon:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	exon	601138	601154	.	+	.	ID=exon:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	three_prime_UTR	601008	601012	.	+	.	ID=three_prime_UTR:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	three_prime_UTR	601027	601124	.	+	.	ID=three_prime_UTR:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	three_prime_UTR	601138	601154	.	+	.	ID=three_prime_UTR:470196;Parent=Transcript:470196
+scaffold_1	JGI_Filtered	gene	601736	602094	.	-	.	ID=scaffold_100171.1;Name=scaffold_100171.1
+scaffold_1	JGI_Filtered	mRNA	601736	602094	.	-	.	ID=Transcript:918890;Name=Transcript:918890;Parent=scaffold_100171.1
+scaffold_1	JGI_Filtered	three_prime_UTR	601736	601756	.	-	.	ID=three_prime_UTR:918890;Parent=Transcript:918890
+scaffold_1	JGI_Filtered	exon	601736	602094	.	-	.	ID=exon:918890;Parent=Transcript:918890
+scaffold_1	JGI_Filtered	CDS	601757	602074	.	-	0	ID=CDS:918890;Parent=Transcript:918890;Name=scaffold_100171.1
+scaffold_1	JGI_Filtered	five_prime_UTR	602075	602094	.	-	.	ID=five_prime_UTR:918890;Parent=Transcript:918890
+scaffold_1	JGI_Filtered	gene	602514	603658	.	+	.	ID=scaffold_100172.1;Name=scaffold_100172.1
+scaffold_1	JGI_Filtered	mRNA	602514	603658	.	+	.	ID=Transcript:918891;Name=Transcript:918891;Parent=scaffold_100172.1
+scaffold_1	JGI_Filtered	five_prime_UTR	602514	602533	.	+	.	ID=five_prime_UTR:918891;Parent=Transcript:918891
+scaffold_1	JGI_Filtered	exon	602514	603023	.	+	.	ID=exon:918891;Parent=Transcript:918891
+scaffold_1	JGI_Filtered	CDS	602534	603023	.	+	0	ID=CDS:918891;Parent=Transcript:918891;Name=scaffold_100172.1
+scaffold_1	JGI_Filtered	exon	603306	603450	.	+	.	ID=exon:918891;Parent=Transcript:918891
+scaffold_1	JGI_Filtered	CDS	603306	603450	.	+	1	ID=CDS:918891;Parent=Transcript:918891;Name=scaffold_100172.1
+scaffold_1	JGI_Filtered	exon	603578	603658	.	+	.	ID=exon:918891;Parent=Transcript:918891
+scaffold_1	JGI_Filtered	CDS	603578	603638	.	+	2	ID=CDS:918891;Parent=Transcript:918891;Name=scaffold_100172.1
+scaffold_1	JGI_Filtered	three_prime_UTR	603639	603658	.	+	.	ID=three_prime_UTR:918891;Parent=Transcript:918891
+scaffold_1	JGI_Filtered	gene	605536	607891	.	+	.	ID=fgenesh2_kg.1__152__AT1G02390.1;Name=fgenesh2_kg.1__152__AT1G02390.1
+scaffold_1	JGI_Filtered	mRNA	605536	607891	.	+	.	ID=Transcript:470198;Name=Transcript:470198;Parent=fgenesh2_kg.1__152__AT1G02390.1
+scaffold_1	JGI_Filtered	five_prime_UTR	605536	605604	.	+	.	ID=five_prime_UTR:470198;Parent=Transcript:470198
+scaffold_1	JGI_Filtered	exon	605536	606300	.	+	.	ID=exon:470198;Parent=Transcript:470198
+scaffold_1	JGI_Filtered	CDS	605605	606300	.	+	0	ID=CDS:470198;Parent=Transcript:470198;Name=fgenesh2_kg.1__152__AT1G02390.1
+scaffold_1	JGI_Filtered	exon	606872	607891	.	+	.	ID=exon:470198;Parent=Transcript:470198
+scaffold_1	JGI_Filtered	CDS	606872	607753	.	+	0	ID=CDS:470198;Parent=Transcript:470198;Name=fgenesh2_kg.1__152__AT1G02390.1
+scaffold_1	JGI_Filtered	three_prime_UTR	607754	607891	.	+	.	ID=three_prime_UTR:470198;Parent=Transcript:470198
+scaffold_1	JGI_Filtered	gene	612831	615239	.	+	.	ID=Al_scaffold_0001_155;Name=Al_scaffold_0001_155
+scaffold_1	JGI_Filtered	mRNA	612831	615239	.	+	.	ID=Transcript:909901;Name=Transcript:909901;Parent=Al_scaffold_0001_155
+scaffold_1	JGI_Filtered	exon	612831	613231	.	+	.	ID=exon:909901;Parent=Transcript:909901
+scaffold_1	JGI_Filtered	CDS	612831	613231	.	+	0	ID=CDS:909901;Parent=Transcript:909901;Name=Al_scaffold_0001_155
+scaffold_1	JGI_Filtered	exon	614580	614922	.	+	.	ID=exon:909901;Parent=Transcript:909901
+scaffold_1	JGI_Filtered	CDS	614580	614922	.	+	2	ID=CDS:909901;Parent=Transcript:909901;Name=Al_scaffold_0001_155
+scaffold_1	JGI_Filtered	exon	614994	615239	.	+	.	ID=exon:909901;Parent=Transcript:909901
+scaffold_1	JGI_Filtered	CDS	614994	615239	.	+	0	ID=CDS:909901;Parent=Transcript:909901;Name=Al_scaffold_0001_155
+scaffold_1	JGI_Filtered	gene	615826	616316	.	-	.	ID=fgenesh2_kg.1__154__AT1G02405.1;Name=fgenesh2_kg.1__154__AT1G02405.1
+scaffold_1	JGI_Filtered	mRNA	615826	616316	.	-	.	ID=Transcript:470200;Name=Transcript:470200;Parent=fgenesh2_kg.1__154__AT1G02405.1
+scaffold_1	JGI_Filtered	three_prime_UTR	615826	615856	.	-	.	ID=three_prime_UTR:470200;Parent=Transcript:470200
+scaffold_1	JGI_Filtered	three_prime_UTR	615889	615925	.	-	.	ID=three_prime_UTR:470200;Parent=Transcript:470200
+scaffold_1	JGI_Filtered	exon	615826	615856	.	-	.	ID=exon:470200;Parent=Transcript:470200
+scaffold_1	JGI_Filtered	exon	615889	616316	.	-	.	ID=exon:470200;Parent=Transcript:470200
+scaffold_1	JGI_Filtered	CDS	615926	616309	.	-	0	ID=CDS:470200;Parent=Transcript:470200;Name=fgenesh2_kg.1__154__AT1G02405.1
+scaffold_1	JGI_Filtered	five_prime_UTR	616310	616316	.	-	.	ID=five_prime_UTR:470200;Parent=Transcript:470200
+scaffold_1	JGI_Filtered	gene	617112	618613	.	+	.	ID=scaffold_100176.1;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	mRNA	617112	618613	.	+	.	ID=Transcript:918895;Name=Transcript:918895;Parent=scaffold_100176.1
+scaffold_1	JGI_Filtered	five_prime_UTR	617112	617131	.	+	.	ID=five_prime_UTR:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	exon	617112	617211	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	617132	617211	.	+	0	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	617330	617645	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	617330	617645	.	+	2	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	617746	617798	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	617746	617798	.	+	0	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	617909	617981	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	617909	617981	.	+	2	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	618072	618176	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	618072	618176	.	+	0	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	618267	618347	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	618267	618347	.	+	0	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	exon	618438	618613	.	+	.	ID=exon:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	CDS	618438	618593	.	+	0	ID=CDS:918895;Parent=Transcript:918895;Name=scaffold_100176.1
+scaffold_1	JGI_Filtered	three_prime_UTR	618594	618613	.	+	.	ID=three_prime_UTR:918895;Parent=Transcript:918895
+scaffold_1	JGI_Filtered	gene	620062	621534	.	+	.	ID=fgenesh2_kg.1__156__AT1G02420.1;Name=fgenesh2_kg.1__156__AT1G02420.1
+scaffold_1	JGI_Filtered	mRNA	620062	621534	.	+	.	ID=Transcript:470202;Name=Transcript:470202;Parent=fgenesh2_kg.1__156__AT1G02420.1
+scaffold_1	JGI_Filtered	exon	620062	621534	.	+	.	ID=exon:470202;Parent=Transcript:470202
+scaffold_1	JGI_Filtered	CDS	620062	621534	.	+	0	ID=CDS:470202;Parent=Transcript:470202;Name=fgenesh2_kg.1__156__AT1G02420.1
+scaffold_1	JGI_Filtered	gene	621551	622441	.	-	.	ID=Al_scaffold_0001_159;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	mRNA	621551	622441	.	-	.	ID=Transcript:909905;Name=Transcript:909905;Parent=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	exon	621551	621635	.	-	.	ID=exon:909905;Parent=Transcript:909905
+scaffold_1	JGI_Filtered	CDS	621551	621635	.	-	0	ID=CDS:909905;Parent=Transcript:909905;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	exon	621726	621865	.	-	.	ID=exon:909905;Parent=Transcript:909905
+scaffold_1	JGI_Filtered	CDS	621726	621865	.	-	1	ID=CDS:909905;Parent=Transcript:909905;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	exon	621937	622056	.	-	.	ID=exon:909905;Parent=Transcript:909905
+scaffold_1	JGI_Filtered	CDS	621937	622056	.	-	0	ID=CDS:909905;Parent=Transcript:909905;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	exon	622129	622205	.	-	.	ID=exon:909905;Parent=Transcript:909905
+scaffold_1	JGI_Filtered	CDS	622129	622205	.	-	0	ID=CDS:909905;Parent=Transcript:909905;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	exon	622291	622441	.	-	.	ID=exon:909905;Parent=Transcript:909905
+scaffold_1	JGI_Filtered	CDS	622291	622441	.	-	2	ID=CDS:909905;Parent=Transcript:909905;Name=Al_scaffold_0001_159
+scaffold_1	JGI_Filtered	gene	622888	623335	.	-	.	ID=fgenesh2_kg.1__159__AT1G02450.1;Name=fgenesh2_kg.1__159__AT1G02450.1
+scaffold_1	JGI_Filtered	mRNA	622888	623335	.	-	.	ID=Transcript:470205;Name=Transcript:470205;Parent=fgenesh2_kg.1__159__AT1G02450.1
+scaffold_1	JGI_Filtered	three_prime_UTR	622888	622890	.	-	.	ID=three_prime_UTR:470205;Parent=Transcript:470205
+scaffold_1	JGI_Filtered	exon	622888	623335	.	-	.	ID=exon:470205;Parent=Transcript:470205
+scaffold_1	JGI_Filtered	CDS	622891	623259	.	-	0	ID=CDS:470205;Parent=Transcript:470205;Name=fgenesh2_kg.1__159__AT1G02450.1
+scaffold_1	JGI_Filtered	five_prime_UTR	623260	623335	.	-	.	ID=five_prime_UTR:470205;Parent=Transcript:470205
+scaffold_1	JGI_Filtered	gene	628623	630888	.	-	.	ID=scaffold_100180.1;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	mRNA	628623	630888	.	-	.	ID=Transcript:918899;Name=Transcript:918899;Parent=scaffold_100180.1
+scaffold_1	JGI_Filtered	three_prime_UTR	628623	629153	.	-	.	ID=three_prime_UTR:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	exon	628623	629153	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	exon	629239	629323	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	CDS	629239	629323	.	-	1	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	CDS	629239	629153	.	-	0	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	exon	629553	629760	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	CDS	629553	629760	.	-	2	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	exon	629840	629887	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	CDS	629840	629887	.	-	0	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	exon	630151	630318	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	CDS	630151	630318	.	-	0	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	exon	630413	630888	.	-	.	ID=exon:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	CDS	630413	630868	.	-	0	ID=CDS:918899;Parent=Transcript:918899;Name=scaffold_100180.1
+scaffold_1	JGI_Filtered	five_prime_UTR	630869	630888	.	-	.	ID=five_prime_UTR:918899;Parent=Transcript:918899
+scaffold_1	JGI_Filtered	gene	635225	636856	.	-	.	ID=fgenesh2_kg.1__161__AT1G02470.2;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	mRNA	635225	636856	.	-	.	ID=Transcript:470207;Name=Transcript:470207;Parent=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	three_prime_UTR	635225	635267	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	three_prime_UTR	635487	635502	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	three_prime_UTR	635518	635543	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	three_prime_UTR	635561	635671	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	three_prime_UTR	635759	635806	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	three_prime_UTR	635896	635944	.	-	.	ID=three_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	exon	635225	635267	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	exon	635487	635502	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	exon	635518	635543	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	exon	635561	635671	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	exon	635759	635806	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	635759	635806	.	-	0	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	exon	635896	635944	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	635896	635944	.	-	0	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	exon	636058	636110	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	636058	636110	.	-	1	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	CDS	636058	635671	.	-	0	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	exon	636202	636297	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	636202	636297	.	-	0	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	exon	636366	636468	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	636366	636468	.	-	0	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	exon	636562	636856	.	-	.	ID=exon:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	CDS	636562	636818	.	-	1	ID=CDS:470207;Parent=Transcript:470207;Name=fgenesh2_kg.1__161__AT1G02470.2
+scaffold_1	JGI_Filtered	five_prime_UTR	636819	636856	.	-	.	ID=five_prime_UTR:470207;Parent=Transcript:470207
+scaffold_1	JGI_Filtered	gene	637376	638578	.	-	.	ID=fgenesh1_pm.C_scaffold_1000137;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	mRNA	637376	638578	.	-	.	ID=Transcript:311357;Name=Transcript:311357;Parent=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	three_prime_UTR	637376	637450	.	-	.	ID=three_prime_UTR:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	three_prime_UTR	637536	637583	.	-	.	ID=three_prime_UTR:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	three_prime_UTR	637685	637733	.	-	.	ID=three_prime_UTR:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	exon	637376	637450	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	exon	637536	637583	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	637536	637583	.	-	0	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	exon	637685	637733	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	637685	637733	.	-	0	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	exon	637814	637866	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	637814	637866	.	-	1	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	CDS	637814	637450	.	-	0	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	exon	637927	638040	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	637927	638040	.	-	0	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	exon	638141	638240	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	638141	638240	.	-	0	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	exon	638358	638578	.	-	.	ID=exon:311357;Parent=Transcript:311357
+scaffold_1	JGI_Filtered	CDS	638358	638578	.	-	1	ID=CDS:311357;Parent=Transcript:311357;Name=fgenesh1_pm.C_scaffold_1000137
+scaffold_1	JGI_Filtered	gene	650407	652252	.	+	.	ID=fgenesh2_kg.1__164__AT1G02500.1;Name=fgenesh2_kg.1__164__AT1G02500.1
+scaffold_1	JGI_Filtered	mRNA	650407	652252	.	+	.	ID=Transcript:470210;Name=Transcript:470210;Parent=fgenesh2_kg.1__164__AT1G02500.1
+scaffold_1	JGI_Filtered	five_prime_UTR	650407	650450	.	+	.	ID=five_prime_UTR:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	five_prime_UTR	650478	650536	.	+	.	ID=five_prime_UTR:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	five_prime_UTR	650854	650859	.	+	.	ID=five_prime_UTR:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	exon	650407	650450	.	+	.	ID=exon:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	exon	650478	650536	.	+	.	ID=exon:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	exon	650854	651015	.	+	.	ID=exon:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	CDS	650860	651015	.	+	0	ID=CDS:470210;Parent=Transcript:470210;Name=fgenesh2_kg.1__164__AT1G02500.1
+scaffold_1	JGI_Filtered	exon	651060	652252	.	+	.	ID=exon:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	CDS	651060	652040	.	+	0	ID=CDS:470210;Parent=Transcript:470210;Name=fgenesh2_kg.1__164__AT1G02500.1
+scaffold_1	JGI_Filtered	three_prime_UTR	652041	652252	.	+	.	ID=three_prime_UTR:470210;Parent=Transcript:470210
+scaffold_1	JGI_Filtered	gene	652374	653539	.	-	.	ID=fgenesh2_kg.1__166__AT1G02510.1;Name=fgenesh2_kg.1__166__AT1G02510.1
+scaffold_1	JGI_Filtered	mRNA	652374	653539	.	-	.	ID=Transcript:470212;Name=Transcript:470212;Parent=fgenesh2_kg.1__166__AT1G02510.1
+scaffold_1	JGI_Filtered	three_prime_UTR	652374	652557	.	-	.	ID=three_prime_UTR:470212;Parent=Transcript:470212
+scaffold_1	JGI_Filtered	exon	652374	652675	.	-	.	ID=exon:470212;Parent=Transcript:470212
+scaffold_1	JGI_Filtered	CDS	652558	652675	.	-	0	ID=CDS:470212;Parent=Transcript:470212;Name=fgenesh2_kg.1__166__AT1G02510.1
+scaffold_1	JGI_Filtered	exon	652761	653539	.	-	.	ID=exon:470212;Parent=Transcript:470212
+scaffold_1	JGI_Filtered	CDS	652761	653506	.	-	1	ID=CDS:470212;Parent=Transcript:470212;Name=fgenesh2_kg.1__166__AT1G02510.1
+scaffold_1	JGI_Filtered	five_prime_UTR	653507	653539	.	-	.	ID=five_prime_UTR:470212;Parent=Transcript:470212
+scaffold_1	JGI_Filtered	gene	655997	667583	.	+	.	ID=fgenesh2_kg.1__167__AT1G02530.1;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	mRNA	655997	667583	.	+	.	ID=Transcript:470213;Name=Transcript:470213;Parent=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	five_prime_UTR	655997	656037	.	+	.	ID=five_prime_UTR:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	exon	655997	656098	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	656038	656098	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	656141	656343	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	656141	656343	.	+	1	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	656427	656481	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	656427	656481	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	656594	656767	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	656594	656767	.	+	1	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	656847	657070	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	656847	657070	.	+	1	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	657154	657392	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	657154	657392	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	664241	665921	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	664241	665921	.	+	2	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	666025	666291	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	666025	666291	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	666319	666324	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	666319	666324	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	666377	666634	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	666377	666634	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	666717	667016	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	666717	667016	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	667112	667467	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	CDS	667112	667465	.	+	0	ID=CDS:470213;Parent=Transcript:470213;Name=fgenesh2_kg.1__167__AT1G02530.1
+scaffold_1	JGI_Filtered	exon	667511	667583	.	+	.	ID=exon:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	three_prime_UTR	667466	667467	.	+	.	ID=three_prime_UTR:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	three_prime_UTR	667511	667583	.	+	.	ID=three_prime_UTR:470213;Parent=Transcript:470213
+scaffold_1	JGI_Filtered	gene	668474	669242	.	+	.	ID=scaffold_100187.1;Name=scaffold_100187.1
+scaffold_1	JGI_Filtered	mRNA	668474	669242	.	+	.	ID=Transcript:918906;Name=Transcript:918906;Parent=scaffold_100187.1
+scaffold_1	JGI_Filtered	five_prime_UTR	668474	668493	.	+	.	ID=five_prime_UTR:918906;Parent=Transcript:918906
+scaffold_1	JGI_Filtered	exon	668474	669242	.	+	.	ID=exon:918906;Parent=Transcript:918906
+scaffold_1	JGI_Filtered	CDS	668494	669222	.	+	0	ID=CDS:918906;Parent=Transcript:918906;Name=scaffold_100187.1
+scaffold_1	JGI_Filtered	three_prime_UTR	669223	669242	.	+	.	ID=three_prime_UTR:918906;Parent=Transcript:918906
+scaffold_1	JGI_Filtered	gene	670715	672588	.	+	.	ID=scaffold_100188.1;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	mRNA	670715	672588	.	+	.	ID=Transcript:918907;Name=Transcript:918907;Parent=scaffold_100188.1
+scaffold_1	JGI_Filtered	five_prime_UTR	670715	670734	.	+	.	ID=five_prime_UTR:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	exon	670715	670865	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	670735	670865	.	+	0	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	670941	671060	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	670941	671060	.	+	2	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	671141	671255	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	671141	671255	.	+	2	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	671345	671437	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	671345	671437	.	+	0	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	671527	671572	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	671527	671572	.	+	0	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	671683	671755	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	671683	671755	.	+	1	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	672014	672048	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	672014	672048	.	+	2	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	672151	672239	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	672151	672239	.	+	1	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	exon	672374	672588	.	+	.	ID=exon:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	CDS	672374	672568	.	+	0	ID=CDS:918907;Parent=Transcript:918907;Name=scaffold_100188.1
+scaffold_1	JGI_Filtered	three_prime_UTR	672569	672588	.	+	.	ID=three_prime_UTR:918907;Parent=Transcript:918907
+scaffold_1	JGI_Filtered	gene	673517	676258	.	+	.	ID=fgenesh1_pm.C_scaffold_1000142;Name=fgenesh1_pm.C_scaffold_1000142
+scaffold_1	JGI_Filtered	mRNA	673517	676258	.	+	.	ID=Transcript:311362;Name=Transcript:311362;Parent=fgenesh1_pm.C_scaffold_1000142
+scaffold_1	JGI_Filtered	exon	673517	673929	.	+	.	ID=exon:311362;Parent=Transcript:311362
+scaffold_1	JGI_Filtered	CDS	673517	673929	.	+	0	ID=CDS:311362;Parent=Transcript:311362;Name=fgenesh1_pm.C_scaffold_1000142
+scaffold_1	JGI_Filtered	exon	673993	674230	.	+	.	ID=exon:311362;Parent=Transcript:311362
+scaffold_1	JGI_Filtered	CDS	673993	674230	.	+	2	ID=CDS:311362;Parent=Transcript:311362;Name=fgenesh1_pm.C_scaffold_1000142
+scaffold_1	JGI_Filtered	exon	675629	676258	.	+	.	ID=exon:311362;Parent=Transcript:311362
+scaffold_1	JGI_Filtered	CDS	675629	676258	.	+	0	ID=CDS:311362;Parent=Transcript:311362;Name=fgenesh1_pm.C_scaffold_1000142
+scaffold_1	JGI_Filtered	gene	677676	682114	.	+	.	ID=fgenesh2_kg.1__172__AT1G02580.1;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	mRNA	677676	682114	.	+	.	ID=Transcript:470218;Name=Transcript:470218;Parent=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	five_prime_UTR	677676	677688	.	+	.	ID=five_prime_UTR:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	exon	677676	677697	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	677689	677697	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	677863	677952	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	677863	677952	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	678601	678888	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	678601	678888	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	678996	679162	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	678996	679162	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	679259	679346	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	679259	679346	.	+	2	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	679431	679556	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	679431	679556	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	679652	679699	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	679652	679699	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	679798	679866	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	679798	679866	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	679958	680106	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	679958	680106	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	680182	680308	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	680182	680308	.	+	2	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	680405	680613	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	680405	680613	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	680697	680828	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	680697	680828	.	+	2	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	680903	680984	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	680903	680984	.	+	2	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	681069	681116	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	681069	681116	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	681257	681385	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	681257	681385	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	681465	681542	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	681465	681542	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	exon	681738	682114	.	+	.	ID=exon:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	CDS	681738	681917	.	+	0	ID=CDS:470218;Parent=Transcript:470218;Name=fgenesh2_kg.1__172__AT1G02580.1
+scaffold_1	JGI_Filtered	three_prime_UTR	681918	682114	.	+	.	ID=three_prime_UTR:470218;Parent=Transcript:470218
+scaffold_1	JGI_Filtered	gene	684011	686672	.	-	.	ID=Al_scaffold_0001_173;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	mRNA	684011	686672	.	-	.	ID=Transcript:909919;Name=Transcript:909919;Parent=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	684011	684091	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	684011	684091	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	684261	684356	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	684261	684356	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	684465	684542	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	684465	684542	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	685439	685577	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	685439	685577	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	685691	685758	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	685691	685758	.	-	1	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	686371	686442	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	686371	686442	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	exon	686544	686672	.	-	.	ID=exon:909919;Parent=Transcript:909919
+scaffold_1	JGI_Filtered	CDS	686544	686672	.	-	0	ID=CDS:909919;Parent=Transcript:909919;Name=Al_scaffold_0001_173
+scaffold_1	JGI_Filtered	gene	689175	690417	.	+	.	ID=scaffold_100193.1;Name=scaffold_100193.1
+scaffold_1	JGI_Filtered	mRNA	689175	690417	.	+	.	ID=Transcript:918912;Name=Transcript:918912;Parent=scaffold_100193.1
+scaffold_1	JGI_Filtered	five_prime_UTR	689175	689194	.	+	.	ID=five_prime_UTR:918912;Parent=Transcript:918912
+scaffold_1	JGI_Filtered	exon	689175	689323	.	+	.	ID=exon:918912;Parent=Transcript:918912
+scaffold_1	JGI_Filtered	CDS	689195	689323	.	+	0	ID=CDS:918912;Parent=Transcript:918912;Name=scaffold_100193.1
+scaffold_1	JGI_Filtered	exon	689730	689861	.	+	.	ID=exon:918912;Parent=Transcript:918912
+scaffold_1	JGI_Filtered	CDS	689730	689861	.	+	0	ID=CDS:918912;Parent=Transcript:918912;Name=scaffold_100193.1
+scaffold_1	JGI_Filtered	exon	690077	690417	.	+	.	ID=exon:918912;Parent=Transcript:918912
+scaffold_1	JGI_Filtered	CDS	690077	690397	.	+	0	ID=CDS:918912;Parent=Transcript:918912;Name=scaffold_100193.1
+scaffold_1	JGI_Filtered	three_prime_UTR	690398	690417	.	+	.	ID=three_prime_UTR:918912;Parent=Transcript:918912
+scaffold_1	JGI_Filtered	gene	691077	693903	.	-	.	ID=scaffold_100194.1;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	mRNA	691077	693903	.	-	.	ID=Transcript:918913;Name=Transcript:918913;Parent=scaffold_100194.1
+scaffold_1	JGI_Filtered	three_prime_UTR	691077	691096	.	-	.	ID=three_prime_UTR:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	exon	691077	691305	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	691097	691305	.	-	0	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	691389	691680	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	691389	691680	.	-	2	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	691818	691915	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	691818	691915	.	-	0	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	692299	692416	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	692299	692416	.	-	2	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	692657	692707	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	692657	692707	.	-	0	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	692779	692960	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	692779	692960	.	-	0	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	693231	693456	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	693231	693456	.	-	2	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	exon	693881	693903	.	-	.	ID=exon:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	CDS	693881	693883	.	-	0	ID=CDS:918913;Parent=Transcript:918913;Name=scaffold_100194.1
+scaffold_1	JGI_Filtered	five_prime_UTR	693884	693903	.	-	.	ID=five_prime_UTR:918913;Parent=Transcript:918913
+scaffold_1	JGI_Filtered	gene	695602	697254	.	-	.	ID=fgenesh2_kg.1__175__AT1G02630.1;Name=fgenesh2_kg.1__175__AT1G02630.1
+scaffold_1	JGI_Filtered	mRNA	695602	697254	.	-	.	ID=Transcript:470221;Name=Transcript:470221;Parent=fgenesh2_kg.1__175__AT1G02630.1
+scaffold_1	JGI_Filtered	three_prime_UTR	695602	695665	.	-	.	ID=three_prime_UTR:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	three_prime_UTR	695702	695746	.	-	.	ID=three_prime_UTR:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	exon	695602	695665	.	-	.	ID=exon:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	exon	695702	695746	.	-	.	ID=exon:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	exon	695885	696573	.	-	.	ID=exon:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	CDS	695885	696573	.	-	0	ID=CDS:470221;Parent=Transcript:470221;Name=fgenesh2_kg.1__175__AT1G02630.1
+scaffold_1	JGI_Filtered	exon	696733	697254	.	-	.	ID=exon:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	CDS	696733	697213	.	-	2	ID=CDS:470221;Parent=Transcript:470221;Name=fgenesh2_kg.1__175__AT1G02630.1
+scaffold_1	JGI_Filtered	five_prime_UTR	697214	697254	.	-	.	ID=five_prime_UTR:470221;Parent=Transcript:470221
+scaffold_1	JGI_Filtered	gene	698975	702489	.	+	.	ID=fgenesh2_kg.1__176__AT1G02640.1;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	mRNA	698975	702489	.	+	.	ID=Transcript:470222;Name=Transcript:470222;Parent=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	five_prime_UTR	698975	698995	.	+	.	ID=five_prime_UTR:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	exon	698975	699385	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	CDS	698996	699385	.	+	0	ID=CDS:470222;Parent=Transcript:470222;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	exon	700207	700485	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	CDS	700207	700485	.	+	0	ID=CDS:470222;Parent=Transcript:470222;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	exon	700568	700737	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	CDS	700568	700737	.	+	0	ID=CDS:470222;Parent=Transcript:470222;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	exon	700824	700921	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	CDS	700824	700921	.	+	2	ID=CDS:470222;Parent=Transcript:470222;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	exon	701009	702374	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	CDS	701009	702363	.	+	1	ID=CDS:470222;Parent=Transcript:470222;Name=fgenesh2_kg.1__176__AT1G02640.1
+scaffold_1	JGI_Filtered	exon	702469	702489	.	+	.	ID=exon:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	three_prime_UTR	702364	702374	.	+	.	ID=three_prime_UTR:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	three_prime_UTR	702469	702489	.	+	.	ID=three_prime_UTR:470222;Parent=Transcript:470222
+scaffold_1	JGI_Filtered	gene	703482	705257	.	+	.	ID=fgenesh2_kg.1__177__AT1G02650.1;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	mRNA	703482	705257	.	+	.	ID=Transcript:470223;Name=Transcript:470223;Parent=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	exon	703482	703517	.	+	.	ID=exon:470223;Parent=Transcript:470223
+scaffold_1	JGI_Filtered	CDS	703482	703517	.	+	0	ID=CDS:470223;Parent=Transcript:470223;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	exon	703625	704016	.	+	.	ID=exon:470223;Parent=Transcript:470223
+scaffold_1	JGI_Filtered	CDS	703625	704016	.	+	0	ID=CDS:470223;Parent=Transcript:470223;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	exon	704098	704912	.	+	.	ID=exon:470223;Parent=Transcript:470223
+scaffold_1	JGI_Filtered	CDS	704098	704912	.	+	2	ID=CDS:470223;Parent=Transcript:470223;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	exon	704965	705158	.	+	.	ID=exon:470223;Parent=Transcript:470223
+scaffold_1	JGI_Filtered	CDS	704965	705158	.	+	1	ID=CDS:470223;Parent=Transcript:470223;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	exon	705171	705257	.	+	.	ID=exon:470223;Parent=Transcript:470223
+scaffold_1	JGI_Filtered	CDS	705171	705257	.	+	0	ID=CDS:470223;Parent=Transcript:470223;Name=fgenesh2_kg.1__177__AT1G02650.1
+scaffold_1	JGI_Filtered	gene	706878	709509	.	-	.	ID=scaffold_100199.1;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	mRNA	706878	709509	.	-	.	ID=Transcript:918918;Name=Transcript:918918;Parent=scaffold_100199.1
+scaffold_1	JGI_Filtered	three_prime_UTR	706878	706899	.	-	.	ID=three_prime_UTR:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	exon	706878	707472	.	-	.	ID=exon:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	CDS	706900	707472	.	-	0	ID=CDS:918918;Parent=Transcript:918918;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	exon	707555	707971	.	-	.	ID=exon:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	CDS	707555	707971	.	-	0	ID=CDS:918918;Parent=Transcript:918918;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	exon	708054	708113	.	-	.	ID=exon:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	CDS	708054	708113	.	-	0	ID=CDS:918918;Parent=Transcript:918918;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	exon	708201	708665	.	-	.	ID=exon:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	CDS	708201	708665	.	-	0	ID=CDS:918918;Parent=Transcript:918918;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	exon	708857	709509	.	-	.	ID=exon:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	CDS	708857	709489	.	-	0	ID=CDS:918918;Parent=Transcript:918918;Name=scaffold_100199.1
+scaffold_1	JGI_Filtered	five_prime_UTR	709490	709509	.	-	.	ID=five_prime_UTR:918918;Parent=Transcript:918918
+scaffold_1	JGI_Filtered	gene	712841	713720	.	+	.	ID=scaffold_100200.1;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	mRNA	712841	713720	.	+	.	ID=Transcript:918919;Name=Transcript:918919;Parent=scaffold_100200.1
+scaffold_1	JGI_Filtered	five_prime_UTR	712841	712860	.	+	.	ID=five_prime_UTR:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	exon	712841	712954	.	+	.	ID=exon:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	CDS	712861	712954	.	+	0	ID=CDS:918919;Parent=Transcript:918919;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	exon	713054	713091	.	+	.	ID=exon:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	CDS	713054	713091	.	+	1	ID=CDS:918919;Parent=Transcript:918919;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	exon	713267	713326	.	+	.	ID=exon:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	CDS	713267	713326	.	+	0	ID=CDS:918919;Parent=Transcript:918919;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	exon	713422	713496	.	+	.	ID=exon:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	CDS	713422	713496	.	+	0	ID=CDS:918919;Parent=Transcript:918919;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	exon	713593	713720	.	+	.	ID=exon:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	CDS	713593	713697	.	+	0	ID=CDS:918919;Parent=Transcript:918919;Name=scaffold_100200.1
+scaffold_1	JGI_Filtered	three_prime_UTR	713698	713720	.	+	.	ID=three_prime_UTR:918919;Parent=Transcript:918919
+scaffold_1	JGI_Filtered	gene	713924	714511	.	-	.	ID=scaffold_100201.1;Name=scaffold_100201.1
+scaffold_1	JGI_Filtered	mRNA	713924	714511	.	-	.	ID=Transcript:918920;Name=Transcript:918920;Parent=scaffold_100201.1
+scaffold_1	JGI_Filtered	three_prime_UTR	713924	713944	.	-	.	ID=three_prime_UTR:918920;Parent=Transcript:918920
+scaffold_1	JGI_Filtered	exon	713924	714511	.	-	.	ID=exon:918920;Parent=Transcript:918920
+scaffold_1	JGI_Filtered	CDS	713945	714490	.	-	0	ID=CDS:918920;Parent=Transcript:918920;Name=scaffold_100201.1
+scaffold_1	JGI_Filtered	five_prime_UTR	714491	714511	.	-	.	ID=five_prime_UTR:918920;Parent=Transcript:918920
+scaffold_1	JGI_Filtered	gene	717526	718284	.	+	.	ID=fgenesh2_kg.1__181__AT5G61710.1;Name=fgenesh2_kg.1__181__AT5G61710.1
+scaffold_1	JGI_Filtered	mRNA	717526	718284	.	+	.	ID=Transcript:470227;Name=Transcript:470227;Parent=fgenesh2_kg.1__181__AT5G61710.1
+scaffold_1	JGI_Filtered	five_prime_UTR	717526	717556	.	+	.	ID=five_prime_UTR:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	five_prime_UTR	717567	717614	.	+	.	ID=five_prime_UTR:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	five_prime_UTR	717668	717723	.	+	.	ID=five_prime_UTR:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	exon	717526	717556	.	+	.	ID=exon:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	exon	717567	717614	.	+	.	ID=exon:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	exon	717668	717847	.	+	.	ID=exon:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	CDS	717724	717847	.	+	0	ID=CDS:470227;Parent=Transcript:470227;Name=fgenesh2_kg.1__181__AT5G61710.1
+scaffold_1	JGI_Filtered	exon	717935	718284	.	+	.	ID=exon:470227;Parent=Transcript:470227
+scaffold_1	JGI_Filtered	CDS	717935	718284	.	+	1	ID=CDS:470227;Parent=Transcript:470227;Name=fgenesh2_kg.1__181__AT5G61710.1
+scaffold_1	JGI_Filtered	gene	718741	719617	.	+	.	ID=Al_scaffold_0001_183;Name=Al_scaffold_0001_183
+scaffold_1	JGI_Filtered	mRNA	718741	719617	.	+	.	ID=Transcript:909929;Name=Transcript:909929;Parent=Al_scaffold_0001_183
+scaffold_1	JGI_Filtered	exon	718741	719268	.	+	.	ID=exon:909929;Parent=Transcript:909929
+scaffold_1	JGI_Filtered	CDS	718741	719268	.	+	0	ID=CDS:909929;Parent=Transcript:909929;Name=Al_scaffold_0001_183
+scaffold_1	JGI_Filtered	exon	719492	719617	.	+	.	ID=exon:909929;Parent=Transcript:909929
+scaffold_1	JGI_Filtered	CDS	719492	719617	.	+	0	ID=CDS:909929;Parent=Transcript:909929;Name=Al_scaffold_0001_183
+scaffold_1	JGI_Filtered	gene	720824	722852	.	+	.	ID=scaffold_100205.1;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	mRNA	720824	722852	.	+	.	ID=Transcript:918924;Name=Transcript:918924;Parent=scaffold_100205.1
+scaffold_1	JGI_Filtered	five_prime_UTR	720824	720844	.	+	.	ID=five_prime_UTR:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	exon	720824	721066	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	720845	721066	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	721301	721397	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	721301	721397	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	721495	721586	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	721495	721586	.	+	1	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	721682	721813	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	721682	721813	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	721924	722109	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	721924	722109	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	722205	722368	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	722205	722368	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	722450	722528	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	722450	722528	.	+	2	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	722606	722734	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	722606	722734	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	exon	722797	722852	.	+	.	ID=exon:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	CDS	722797	722829	.	+	0	ID=CDS:918924;Parent=Transcript:918924;Name=scaffold_100205.1
+scaffold_1	JGI_Filtered	three_prime_UTR	722830	722852	.	+	.	ID=three_prime_UTR:918924;Parent=Transcript:918924
+scaffold_1	JGI_Filtered	gene	724801	726076	.	+	.	ID=fgenesh2_kg.1__182__AT1G02700.1;Name=fgenesh2_kg.1__182__AT1G02700.1
+scaffold_1	JGI_Filtered	mRNA	724801	726076	.	+	.	ID=Transcript:470228;Name=Transcript:470228;Parent=fgenesh2_kg.1__182__AT1G02700.1
+scaffold_1	JGI_Filtered	five_prime_UTR	724801	724815	.	+	.	ID=five_prime_UTR:470228;Parent=Transcript:470228
+scaffold_1	JGI_Filtered	exon	724801	724989	.	+	.	ID=exon:470228;Parent=Transcript:470228
+scaffold_1	JGI_Filtered	CDS	724816	724989	.	+	0	ID=CDS:470228;Parent=Transcript:470228;Name=fgenesh2_kg.1__182__AT1G02700.1
+scaffold_1	JGI_Filtered	exon	725249	726076	.	+	.	ID=exon:470228;Parent=Transcript:470228
+scaffold_1	JGI_Filtered	CDS	725249	725824	.	+	0	ID=CDS:470228;Parent=Transcript:470228;Name=fgenesh2_kg.1__182__AT1G02700.1
+scaffold_1	JGI_Filtered	three_prime_UTR	725825	726076	.	+	.	ID=three_prime_UTR:470228;Parent=Transcript:470228
+scaffold_1	JGI_Filtered	gene	726305	726601	.	-	.	ID=fgenesh2_kg.1__183__AT1G02710.1;Name=fgenesh2_kg.1__183__AT1G02710.1
+scaffold_1	JGI_Filtered	mRNA	726305	726601	.	-	.	ID=Transcript:470229;Name=Transcript:470229;Parent=fgenesh2_kg.1__183__AT1G02710.1
+scaffold_1	JGI_Filtered	exon	726305	726456	.	-	.	ID=exon:470229;Parent=Transcript:470229
+scaffold_1	JGI_Filtered	CDS	726305	726456	.	-	0	ID=CDS:470229;Parent=Transcript:470229;Name=fgenesh2_kg.1__183__AT1G02710.1
+scaffold_1	JGI_Filtered	exon	726493	726601	.	-	.	ID=exon:470229;Parent=Transcript:470229
+scaffold_1	JGI_Filtered	CDS	726493	726601	.	-	2	ID=CDS:470229;Parent=Transcript:470229;Name=fgenesh2_kg.1__183__AT1G02710.1
+scaffold_1	JGI_Filtered	gene	728324	730532	.	+	.	ID=fgenesh2_kg.1__185__AT1G02720.1;Name=fgenesh2_kg.1__185__AT1G02720.1
+scaffold_1	JGI_Filtered	mRNA	728324	730532	.	+	.	ID=Transcript:470231;Name=Transcript:470231;Parent=fgenesh2_kg.1__185__AT1G02720.1
+scaffold_1	JGI_Filtered	five_prime_UTR	728324	728494	.	+	.	ID=five_prime_UTR:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	exon	728324	729610	.	+	.	ID=exon:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	CDS	728495	729580	.	+	0	ID=CDS:470231;Parent=Transcript:470231;Name=fgenesh2_kg.1__185__AT1G02720.1
+scaffold_1	JGI_Filtered	exon	730336	730357	.	+	.	ID=exon:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	exon	730432	730460	.	+	.	ID=exon:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	exon	730488	730532	.	+	.	ID=exon:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	three_prime_UTR	729581	729610	.	+	.	ID=three_prime_UTR:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	three_prime_UTR	730336	730357	.	+	.	ID=three_prime_UTR:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	three_prime_UTR	730432	730460	.	+	.	ID=three_prime_UTR:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	three_prime_UTR	730488	730532	.	+	.	ID=three_prime_UTR:470231;Parent=Transcript:470231
+scaffold_1	JGI_Filtered	gene	730979	731207	.	-	.	ID=scaffold_100208.1;Name=scaffold_100208.1
+scaffold_1	JGI_Filtered	mRNA	730979	731207	.	-	.	ID=Transcript:918927;Name=Transcript:918927;Parent=scaffold_100208.1
+scaffold_1	JGI_Filtered	three_prime_UTR	730979	730998	.	-	.	ID=three_prime_UTR:918927;Parent=Transcript:918927
+scaffold_1	JGI_Filtered	exon	730979	731207	.	-	.	ID=exon:918927;Parent=Transcript:918927
+scaffold_1	JGI_Filtered	CDS	730999	731187	.	-	0	ID=CDS:918927;Parent=Transcript:918927;Name=scaffold_100208.1
+scaffold_1	JGI_Filtered	five_prime_UTR	731188	731207	.	-	.	ID=five_prime_UTR:918927;Parent=Transcript:918927
+scaffold_1	JGI_Filtered	gene	731564	731809	.	-	.	ID=scaffold_100209.1;Name=scaffold_100209.1
+scaffold_1	JGI_Filtered	mRNA	731564	731809	.	-	.	ID=Transcript:918928;Name=Transcript:918928;Parent=scaffold_100209.1
+scaffold_1	JGI_Filtered	three_prime_UTR	731564	731583	.	-	.	ID=three_prime_UTR:918928;Parent=Transcript:918928
+scaffold_1	JGI_Filtered	exon	731564	731809	.	-	.	ID=exon:918928;Parent=Transcript:918928
+scaffold_1	JGI_Filtered	CDS	731584	731787	.	-	0	ID=CDS:918928;Parent=Transcript:918928;Name=scaffold_100209.1
+scaffold_1	JGI_Filtered	five_prime_UTR	731788	731809	.	-	.	ID=five_prime_UTR:918928;Parent=Transcript:918928
+scaffold_1	JGI_Filtered	gene	733323	737232	.	-	.	ID=scaffold_100210.1;Name=scaffold_100210.1
+scaffold_1	JGI_Filtered	mRNA	733323	737232	.	-	.	ID=Transcript:918929;Name=Transcript:918929;Parent=scaffold_100210.1
+scaffold_1	JGI_Filtered	three_prime_UTR	733323	733421	.	-	.	ID=three_prime_UTR:918929;Parent=Transcript:918929
+scaffold_1	JGI_Filtered	exon	733323	735203	.	-	.	ID=exon:918929;Parent=Transcript:918929
+scaffold_1	JGI_Filtered	CDS	733422	735203	.	-	0	ID=CDS:918929;Parent=Transcript:918929;Name=scaffold_100210.1
+scaffold_1	JGI_Filtered	exon	735297	736107	.	-	.	ID=exon:918929;Parent=Transcript:918929
+scaffold_1	JGI_Filtered	CDS	735297	736107	.	-	0	ID=CDS:918929;Parent=Transcript:918929;Name=scaffold_100210.1
+scaffold_1	JGI_Filtered	exon	736251	737232	.	-	.	ID=exon:918929;Parent=Transcript:918929
+scaffold_1	JGI_Filtered	CDS	736251	737212	.	-	1	ID=CDS:918929;Parent=Transcript:918929;Name=scaffold_100210.1
+scaffold_1	JGI_Filtered	five_prime_UTR	737213	737232	.	-	.	ID=five_prime_UTR:918929;Parent=Transcript:918929
+scaffold_1	JGI_Filtered	gene	738034	740477	.	-	.	ID=fgenesh2_kg.1__187__AT1G02740.1;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	mRNA	738034	740477	.	-	.	ID=Transcript:470233;Name=Transcript:470233;Parent=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	three_prime_UTR	738034	738083	.	-	.	ID=three_prime_UTR:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	three_prime_UTR	738096	738111	.	-	.	ID=three_prime_UTR:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	three_prime_UTR	738122	738174	.	-	.	ID=three_prime_UTR:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	three_prime_UTR	738186	738265	.	-	.	ID=three_prime_UTR:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	exon	738034	738083	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	exon	738096	738111	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	exon	738122	738174	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	exon	738186	738265	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	exon	738351	738435	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	738351	738435	.	-	1	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	CDS	738351	738265	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	738560	738731	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	738560	738731	.	-	2	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	738939	739016	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	738939	739016	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	739097	739201	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	739097	739201	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	739312	739352	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	739312	739352	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	739662	739807	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	739662	739807	.	-	2	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	739985	739998	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	739985	739998	.	-	1	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	740103	740156	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	740103	740156	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	exon	740260	740477	.	-	.	ID=exon:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	CDS	740260	740469	.	-	0	ID=CDS:470233;Parent=Transcript:470233;Name=fgenesh2_kg.1__187__AT1G02740.1
+scaffold_1	JGI_Filtered	five_prime_UTR	740470	740477	.	-	.	ID=five_prime_UTR:470233;Parent=Transcript:470233
+scaffold_1	JGI_Filtered	gene	740944	742742	.	+	.	ID=fgenesh2_kg.1__188__AT1G02750.1;Name=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	mRNA	740944	742742	.	+	.	ID=Transcript:470234;Name=Transcript:470234;Parent=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	five_prime_UTR	740944	741064	.	+	.	ID=five_prime_UTR:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	exon	740944	741146	.	+	.	ID=exon:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	CDS	741065	741146	.	+	0	ID=CDS:470234;Parent=Transcript:470234;Name=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	exon	741353	741495	.	+	.	ID=exon:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	CDS	741353	741495	.	+	1	ID=CDS:470234;Parent=Transcript:470234;Name=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	exon	742047	742115	.	+	.	ID=exon:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	CDS	742047	742115	.	+	0	ID=CDS:470234;Parent=Transcript:470234;Name=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	exon	742229	742579	.	+	.	ID=exon:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	CDS	742229	742579	.	+	0	ID=CDS:470234;Parent=Transcript:470234;Name=fgenesh2_kg.1__188__AT1G02750.1
+scaffold_1	JGI_Filtered	exon	742590	742742	.	+	.	ID=exon:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	three_prime_UTR	742590	742742	.	+	.	ID=three_prime_UTR:470234;Parent=Transcript:470234
+scaffold_1	JGI_Filtered	gene	744394	745999	.	-	.	ID=fgenesh2_kg.1__189__AT1G02780.1;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	mRNA	744394	745999	.	-	.	ID=Transcript:470235;Name=Transcript:470235;Parent=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	three_prime_UTR	744394	744640	.	-	.	ID=three_prime_UTR:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	exon	744394	744665	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	744641	744665	.	-	0	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	exon	744738	744740	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	744738	744740	.	-	1	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	exon	744752	744819	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	744752	744819	.	-	1	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	exon	744906	745219	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	744906	745219	.	-	0	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	exon	745321	745443	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	745321	745443	.	-	2	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	exon	745814	745999	.	-	.	ID=exon:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	CDS	745814	745925	.	-	2	ID=CDS:470235;Parent=Transcript:470235;Name=fgenesh2_kg.1__189__AT1G02780.1
+scaffold_1	JGI_Filtered	five_prime_UTR	745926	745999	.	-	.	ID=five_prime_UTR:470235;Parent=Transcript:470235
+scaffold_1	JGI_Filtered	gene	747054	748712	.	-	.	ID=scaffold_100214.1;Name=scaffold_100214.1
+scaffold_1	JGI_Filtered	mRNA	747054	748712	.	-	.	ID=Transcript:918933;Name=Transcript:918933;Parent=scaffold_100214.1
+scaffold_1	JGI_Filtered	three_prime_UTR	747054	747075	.	-	.	ID=three_prime_UTR:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	exon	747054	747330	.	-	.	ID=exon:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	CDS	747076	747330	.	-	0	ID=CDS:918933;Parent=Transcript:918933;Name=scaffold_100214.1
+scaffold_1	JGI_Filtered	exon	747424	747927	.	-	.	ID=exon:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	CDS	747424	747927	.	-	0	ID=CDS:918933;Parent=Transcript:918933;Name=scaffold_100214.1
+scaffold_1	JGI_Filtered	exon	748040	748342	.	-	.	ID=exon:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	CDS	748040	748342	.	-	0	ID=CDS:918933;Parent=Transcript:918933;Name=scaffold_100214.1
+scaffold_1	JGI_Filtered	exon	748441	748712	.	-	.	ID=exon:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	CDS	748441	748647	.	-	0	ID=CDS:918933;Parent=Transcript:918933;Name=scaffold_100214.1
+scaffold_1	JGI_Filtered	five_prime_UTR	748648	748712	.	-	.	ID=five_prime_UTR:918933;Parent=Transcript:918933
+scaffold_1	JGI_Filtered	gene	750076	752884	.	-	.	ID=scaffold_100215.1;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	mRNA	750076	752884	.	-	.	ID=Transcript:918934;Name=Transcript:918934;Parent=scaffold_100215.1
+scaffold_1	JGI_Filtered	three_prime_UTR	750076	750095	.	-	.	ID=three_prime_UTR:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	exon	750076	750416	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	750096	750416	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	750811	750974	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	750811	750974	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	751101	751206	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	751101	751206	.	-	2	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	751289	751450	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	751289	751450	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	751552	751644	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	751552	751644	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	751829	752029	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	751829	752029	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	752113	752319	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	752113	752319	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	exon	752612	752884	.	-	.	ID=exon:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	CDS	752612	752863	.	-	0	ID=CDS:918934;Parent=Transcript:918934;Name=scaffold_100215.1
+scaffold_1	JGI_Filtered	five_prime_UTR	752864	752884	.	-	.	ID=five_prime_UTR:918934;Parent=Transcript:918934
+scaffold_1	JGI_Filtered	gene	756485	758576	.	+	.	ID=fgenesh1_pg.C_scaffold_1000172;Name=fgenesh1_pg.C_scaffold_1000172
+scaffold_1	JGI_Filtered	mRNA	756485	758576	.	+	.	ID=Transcript:333607;Name=Transcript:333607;Parent=fgenesh1_pg.C_scaffold_1000172
+scaffold_1	JGI_Filtered	exon	756485	757529	.	+	.	ID=exon:333607;Parent=Transcript:333607
+scaffold_1	JGI_Filtered	CDS	756485	757529	.	+	0	ID=CDS:333607;Parent=Transcript:333607;Name=fgenesh1_pg.C_scaffold_1000172
+scaffold_1	JGI_Filtered	exon	757823	757894	.	+	.	ID=exon:333607;Parent=Transcript:333607
+scaffold_1	JGI_Filtered	CDS	757823	757894	.	+	1	ID=CDS:333607;Parent=Transcript:333607;Name=fgenesh1_pg.C_scaffold_1000172
+scaffold_1	JGI_Filtered	exon	758107	758576	.	+	.	ID=exon:333607;Parent=Transcript:333607
+scaffold_1	JGI_Filtered	CDS	758107	758576	.	+	1	ID=CDS:333607;Parent=Transcript:333607;Name=fgenesh1_pg.C_scaffold_1000172
+scaffold_1	JGI_Filtered	gene	759019	759536	.	+	.	ID=fgenesh2_kg.1__193__AT1G02813.1;Name=fgenesh2_kg.1__193__AT1G02813.1
+scaffold_1	JGI_Filtered	mRNA	759019	759536	.	+	.	ID=Transcript:470239;Name=Transcript:470239;Parent=fgenesh2_kg.1__193__AT1G02813.1
+scaffold_1	JGI_Filtered	five_prime_UTR	759019	759019	.	+	.	ID=five_prime_UTR:470239;Parent=Transcript:470239
+scaffold_1	JGI_Filtered	exon	759019	759536	.	+	.	ID=exon:470239;Parent=Transcript:470239
+scaffold_1	JGI_Filtered	CDS	759020	759469	.	+	0	ID=CDS:470239;Parent=Transcript:470239;Name=fgenesh2_kg.1__193__AT1G02813.1
+scaffold_1	JGI_Filtered	three_prime_UTR	759470	759536	.	+	.	ID=three_prime_UTR:470239;Parent=Transcript:470239
+scaffold_1	JGI_Filtered	gene	759661	760663	.	+	.	ID=fgenesh2_kg.1__194__AT1G02816.1;Name=fgenesh2_kg.1__194__AT1G02816.1
+scaffold_1	JGI_Filtered	mRNA	759661	760663	.	+	.	ID=Transcript:470240;Name=Transcript:470240;Parent=fgenesh2_kg.1__194__AT1G02816.1
+scaffold_1	JGI_Filtered	five_prime_UTR	759661	759801	.	+	.	ID=five_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	five_prime_UTR	759818	759818	.	+	.	ID=five_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	exon	759661	759801	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	exon	759818	759865	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	CDS	759819	759865	.	+	0	ID=CDS:470240;Parent=Transcript:470240;Name=fgenesh2_kg.1__194__AT1G02816.1
+scaffold_1	JGI_Filtered	exon	759884	760414	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	CDS	759884	760337	.	+	2	ID=CDS:470240;Parent=Transcript:470240;Name=fgenesh2_kg.1__194__AT1G02816.1
+scaffold_1	JGI_Filtered	exon	760429	760531	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	exon	760557	760571	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	exon	760595	760663	.	+	.	ID=exon:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	three_prime_UTR	760338	760414	.	+	.	ID=three_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	three_prime_UTR	760429	760531	.	+	.	ID=three_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	three_prime_UTR	760557	760571	.	+	.	ID=three_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	three_prime_UTR	760595	760663	.	+	.	ID=three_prime_UTR:470240;Parent=Transcript:470240
+scaffold_1	JGI_Filtered	gene	762378	762803	.	-	.	ID=scaffold_100219.1;Name=scaffold_100219.1
+scaffold_1	JGI_Filtered	mRNA	762378	762803	.	-	.	ID=Transcript:918938;Name=Transcript:918938;Parent=scaffold_100219.1
+scaffold_1	JGI_Filtered	three_prime_UTR	762378	762397	.	-	.	ID=three_prime_UTR:918938;Parent=Transcript:918938
+scaffold_1	JGI_Filtered	exon	762378	762617	.	-	.	ID=exon:918938;Parent=Transcript:918938
+scaffold_1	JGI_Filtered	CDS	762398	762617	.	-	0	ID=CDS:918938;Parent=Transcript:918938;Name=scaffold_100219.1
+scaffold_1	JGI_Filtered	exon	762710	762803	.	-	.	ID=exon:918938;Parent=Transcript:918938
+scaffold_1	JGI_Filtered	CDS	762710	762783	.	-	1	ID=CDS:918938;Parent=Transcript:918938;Name=scaffold_100219.1
+scaffold_1	JGI_Filtered	five_prime_UTR	762784	762803	.	-	.	ID=five_prime_UTR:918938;Parent=Transcript:918938
+scaffold_1	JGI_Filtered	gene	763612	764069	.	-	.	ID=fgenesh2_kg.1__195__AT1G02830.1;Name=fgenesh2_kg.1__195__AT1G02830.1
+scaffold_1	JGI_Filtered	mRNA	763612	764069	.	-	.	ID=Transcript:470241;Name=Transcript:470241;Parent=fgenesh2_kg.1__195__AT1G02830.1
+scaffold_1	JGI_Filtered	exon	763612	763711	.	-	.	ID=exon:470241;Parent=Transcript:470241
+scaffold_1	JGI_Filtered	CDS	763612	763711	.	-	0	ID=CDS:470241;Parent=Transcript:470241;Name=fgenesh2_kg.1__195__AT1G02830.1
+scaffold_1	JGI_Filtered	exon	763834	764069	.	-	.	ID=exon:470241;Parent=Transcript:470241
+scaffold_1	JGI_Filtered	CDS	763834	764069	.	-	1	ID=CDS:470241;Parent=Transcript:470241;Name=fgenesh2_kg.1__195__AT1G02830.1
+scaffold_1	JGI_Filtered	gene	765430	766468	.	-	.	ID=scaffold_100221.1;Name=scaffold_100221.1
+scaffold_1	JGI_Filtered	mRNA	765430	766468	.	-	.	ID=Transcript:918940;Name=Transcript:918940;Parent=scaffold_100221.1
+scaffold_1	JGI_Filtered	three_prime_UTR	765430	765449	.	-	.	ID=three_prime_UTR:918940;Parent=Transcript:918940
+scaffold_1	JGI_Filtered	exon	765430	765958	.	-	.	ID=exon:918940;Parent=Transcript:918940
+scaffold_1	JGI_Filtered	CDS	765450	765958	.	-	0	ID=CDS:918940;Parent=Transcript:918940;Name=scaffold_100221.1
+scaffold_1	JGI_Filtered	exon	766373	766468	.	-	.	ID=exon:918940;Parent=Transcript:918940
+scaffold_1	JGI_Filtered	CDS	766373	766448	.	-	2	ID=CDS:918940;Parent=Transcript:918940;Name=scaffold_100221.1
+scaffold_1	JGI_Filtered	five_prime_UTR	766449	766468	.	-	.	ID=five_prime_UTR:918940;Parent=Transcript:918940
+scaffold_1	JGI_Filtered	gene	766738	768326	.	-	.	ID=scaffold_100222.1;Name=scaffold_100222.1
+scaffold_1	JGI_Filtered	mRNA	766738	768326	.	-	.	ID=Transcript:918941;Name=Transcript:918941;Parent=scaffold_100222.1
+scaffold_1	JGI_Filtered	three_prime_UTR	766738	766757	.	-	.	ID=three_prime_UTR:918941;Parent=Transcript:918941
+scaffold_1	JGI_Filtered	exon	766738	766948	.	-	.	ID=exon:918941;Parent=Transcript:918941
+scaffold_1	JGI_Filtered	CDS	766758	766948	.	-	0	ID=CDS:918941;Parent=Transcript:918941;Name=scaffold_100222.1
+scaffold_1	JGI_Filtered	exon	767316	767888	.	-	.	ID=exon:918941;Parent=Transcript:918941
+scaffold_1	JGI_Filtered	CDS	767316	767888	.	-	2	ID=CDS:918941;Parent=Transcript:918941;Name=scaffold_100222.1
+scaffold_1	JGI_Filtered	exon	768254	768326	.	-	.	ID=exon:918941;Parent=Transcript:918941
+scaffold_1	JGI_Filtered	CDS	768254	768305	.	-	2	ID=CDS:918941;Parent=Transcript:918941;Name=scaffold_100222.1
+scaffold_1	JGI_Filtered	five_prime_UTR	768306	768326	.	-	.	ID=five_prime_UTR:918941;Parent=Transcript:918941
+scaffold_1	JGI_Filtered	gene	768374	770507	.	+	.	ID=fgenesh1_pm.C_scaffold_1000165;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	mRNA	768374	770507	.	+	.	ID=Transcript:311385;Name=Transcript:311385;Parent=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	768374	768460	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	768374	768460	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	768561	768626	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	768561	768626	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	768775	768849	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	768775	768849	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	768936	769080	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	768936	769080	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	769165	769211	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	769165	769211	.	+	1	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	769298	769355	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	769298	769355	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	769429	769478	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	769429	769478	.	+	1	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	769571	769627	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	769571	769627	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	769710	769957	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	769710	769957	.	+	0	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	exon	770447	770507	.	+	.	ID=exon:311385;Parent=Transcript:311385
+scaffold_1	JGI_Filtered	CDS	770447	770507	.	+	2	ID=CDS:311385;Parent=Transcript:311385;Name=fgenesh1_pm.C_scaffold_1000165
+scaffold_1	JGI_Filtered	gene	771817	774951	.	+	.	ID=Al_scaffold_0001_200;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	mRNA	771817	774951	.	+	.	ID=Transcript:909946;Name=Transcript:909946;Parent=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	771817	771924	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	771817	771924	.	+	0	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	772048	772245	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	772048	772245	.	+	0	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	772352	772427	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	772352	772427	.	+	0	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	772499	772570	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	772499	772570	.	+	1	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	772672	772759	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	772672	772759	.	+	1	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	772842	773097	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	772842	773097	.	+	2	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	773167	773282	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	773167	773282	.	+	0	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	773365	773585	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	773365	773585	.	+	2	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	773946	773964	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	773946	773964	.	+	1	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	774549	774620	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	774549	774620	.	+	2	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	exon	774696	774951	.	+	.	ID=exon:909946;Parent=Transcript:909946
+scaffold_1	JGI_Filtered	CDS	774696	774951	.	+	2	ID=CDS:909946;Parent=Transcript:909946;Name=Al_scaffold_0001_200
+scaffold_1	JGI_Filtered	gene	777262	779272	.	+	.	ID=fgenesh2_kg.1__205__AT1G02860.1;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	mRNA	777262	779272	.	+	.	ID=Transcript:470251;Name=Transcript:470251;Parent=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	five_prime_UTR	777262	777315	.	+	.	ID=five_prime_UTR:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	five_prime_UTR	777327	777421	.	+	.	ID=five_prime_UTR:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	five_prime_UTR	777444	777450	.	+	.	ID=five_prime_UTR:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	exon	777262	777315	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	exon	777327	777421	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	exon	777444	777628	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	777451	777628	.	+	0	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	exon	777734	777981	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	777734	777981	.	+	1	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	exon	778074	778349	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	778074	778349	.	+	0	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	exon	778606	778743	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	778606	778743	.	+	0	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	exon	778832	778890	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	778832	778890	.	+	0	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	exon	778994	779272	.	+	.	ID=exon:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	CDS	778994	779099	.	+	2	ID=CDS:470251;Parent=Transcript:470251;Name=fgenesh2_kg.1__205__AT1G02860.1
+scaffold_1	JGI_Filtered	three_prime_UTR	779100	779272	.	+	.	ID=three_prime_UTR:470251;Parent=Transcript:470251
+scaffold_1	JGI_Filtered	gene	779234	780531	.	-	.	ID=fgenesh2_kg.1__206__AT1G02870.1;Name=fgenesh2_kg.1__206__AT1G02870.1
+scaffold_1	JGI_Filtered	mRNA	779234	780531	.	-	.	ID=Transcript:470252;Name=Transcript:470252;Parent=fgenesh2_kg.1__206__AT1G02870.1
+scaffold_1	JGI_Filtered	three_prime_UTR	779234	779272	.	-	.	ID=three_prime_UTR:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	three_prime_UTR	779302	779383	.	-	.	ID=three_prime_UTR:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	exon	779234	779272	.	-	.	ID=exon:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	exon	779302	779497	.	-	.	ID=exon:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	CDS	779384	779497	.	-	0	ID=CDS:470252;Parent=Transcript:470252;Name=fgenesh2_kg.1__206__AT1G02870.1
+scaffold_1	JGI_Filtered	exon	779579	779700	.	-	.	ID=exon:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	CDS	779579	779700	.	-	0	ID=CDS:470252;Parent=Transcript:470252;Name=fgenesh2_kg.1__206__AT1G02870.1
+scaffold_1	JGI_Filtered	exon	780094	780441	.	-	.	ID=exon:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	CDS	780094	780439	.	-	2	ID=CDS:470252;Parent=Transcript:470252;Name=fgenesh2_kg.1__206__AT1G02870.1
+scaffold_1	JGI_Filtered	exon	780460	780531	.	-	.	ID=exon:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	five_prime_UTR	780440	780441	.	-	.	ID=five_prime_UTR:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	five_prime_UTR	780460	780531	.	-	.	ID=five_prime_UTR:470252;Parent=Transcript:470252
+scaffold_1	JGI_Filtered	gene	781148	782414	.	-	.	ID=Al_scaffold_0001_203;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	mRNA	781148	782414	.	-	.	ID=Transcript:909949;Name=Transcript:909949;Parent=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	781148	781254	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	781148	781254	.	-	0	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	781391	781550	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	781391	781550	.	-	2	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	781641	781696	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	781641	781696	.	-	0	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	781808	781964	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	781808	781964	.	-	2	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	782060	782246	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	782060	782246	.	-	0	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	exon	782395	782414	.	-	.	ID=exon:909949;Parent=Transcript:909949
+scaffold_1	JGI_Filtered	CDS	782395	782414	.	-	1	ID=CDS:909949;Parent=Transcript:909949;Name=Al_scaffold_0001_203
+scaffold_1	JGI_Filtered	gene	784225	786151	.	-	.	ID=fgenesh2_kg.1__210__AT1G02880.2;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	mRNA	784225	786151	.	-	.	ID=Transcript:470256;Name=Transcript:470256;Parent=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	three_prime_UTR	784225	784327	.	-	.	ID=three_prime_UTR:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	three_prime_UTR	784352	784497	.	-	.	ID=three_prime_UTR:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	three_prime_UTR	784511	784524	.	-	.	ID=three_prime_UTR:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	exon	784225	784327	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	exon	784352	784497	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	exon	784511	784670	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	784525	784670	.	-	0	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	784771	785020	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	784771	785020	.	-	2	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	785108	785209	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	785108	785209	.	-	0	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	785300	785372	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	785300	785372	.	-	0	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	785641	785737	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	785641	785737	.	-	1	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	785841	785975	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	CDS	785841	785973	.	-	2	ID=CDS:470256;Parent=Transcript:470256;Name=fgenesh2_kg.1__210__AT1G02880.2
+scaffold_1	JGI_Filtered	exon	786089	786151	.	-	.	ID=exon:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	five_prime_UTR	785974	785975	.	-	.	ID=five_prime_UTR:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	five_prime_UTR	786089	786151	.	-	.	ID=five_prime_UTR:470256;Parent=Transcript:470256
+scaffold_1	JGI_Filtered	gene	786367	786721	.	+	.	ID=scaffold_100229.1;Name=scaffold_100229.1
+scaffold_1	JGI_Filtered	mRNA	786367	786721	.	+	.	ID=Transcript:918948;Name=Transcript:918948;Parent=scaffold_100229.1
+scaffold_1	JGI_Filtered	five_prime_UTR	786367	786386	.	+	.	ID=five_prime_UTR:918948;Parent=Transcript:918948
+scaffold_1	JGI_Filtered	exon	786367	786721	.	+	.	ID=exon:918948;Parent=Transcript:918948
+scaffold_1	JGI_Filtered	CDS	786387	786701	.	+	0	ID=CDS:918948;Parent=Transcript:918948;Name=scaffold_100229.1
+scaffold_1	JGI_Filtered	three_prime_UTR	786702	786721	.	+	.	ID=three_prime_UTR:918948;Parent=Transcript:918948
+scaffold_1	JGI_Filtered	gene	787193	787397	.	+	.	ID=scaffold_100230.1;Name=scaffold_100230.1
+scaffold_1	JGI_Filtered	mRNA	787193	787397	.	+	.	ID=Transcript:918949;Name=Transcript:918949;Parent=scaffold_100230.1
+scaffold_1	JGI_Filtered	five_prime_UTR	787193	787212	.	+	.	ID=five_prime_UTR:918949;Parent=Transcript:918949
+scaffold_1	JGI_Filtered	exon	787193	787397	.	+	.	ID=exon:918949;Parent=Transcript:918949
+scaffold_1	JGI_Filtered	CDS	787213	787377	.	+	0	ID=CDS:918949;Parent=Transcript:918949;Name=scaffold_100230.1
+scaffold_1	JGI_Filtered	three_prime_UTR	787378	787397	.	+	.	ID=three_prime_UTR:918949;Parent=Transcript:918949
+scaffold_1	JGI_Filtered	gene	789508	796443	.	-	.	ID=fgenesh2_kg.1__213__AT1G02890.1;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	mRNA	789508	796443	.	-	.	ID=Transcript:470259;Name=Transcript:470259;Parent=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	three_prime_UTR	789508	789545	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	789601	789881	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	789966	790070	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	790153	790212	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	790296	790434	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	790511	790695	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	790814	790897	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	790976	791098	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	791189	791368	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	791450	791519	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	791613	791709	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	791796	791871	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	791969	792058	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	792140	792244	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	792401	792472	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	792579	792752	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	792840	792910	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	three_prime_UTR	793001	793134	.	-	.	ID=three_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	exon	789508	789545	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	exon	789601	789881	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	exon	789966	790070	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	789966	790070	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	790153	790212	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	790153	790212	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	790296	790434	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	790296	790434	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	790511	790695	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	790511	790695	.	-	1	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	790814	790897	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	790814	790897	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	790976	791098	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	790976	791098	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	791189	791368	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	791189	791368	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	791450	791519	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	791450	791519	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	791613	791709	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	791613	791709	.	-	1	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	791796	791871	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	791796	791871	.	-	2	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	791969	792058	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	791969	792058	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	792140	792244	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	792140	792244	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	792401	792472	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	792401	792472	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	792579	792752	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	792579	792752	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	792840	792910	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	792840	792910	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	793001	793134	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	793001	793134	.	-	2	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	793245	793317	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	793245	793317	.	-	1	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	CDS	793245	789881	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	793412	793640	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	793412	793640	.	-	2	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	793857	793948	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	793857	793948	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	794042	794166	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	794042	794166	.	-	2	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	794286	794944	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	794286	794944	.	-	1	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	795088	795234	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	795088	795234	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	795313	795426	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	795313	795426	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	795758	795849	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	795758	795849	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	795927	796146	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	795927	796146	.	-	2	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	exon	796310	796443	.	-	.	ID=exon:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	CDS	796310	796396	.	-	0	ID=CDS:470259;Parent=Transcript:470259;Name=fgenesh2_kg.1__213__AT1G02890.1
+scaffold_1	JGI_Filtered	five_prime_UTR	796397	796443	.	-	.	ID=five_prime_UTR:470259;Parent=Transcript:470259
+scaffold_1	JGI_Filtered	gene	798586	799140	.	-	.	ID=fgenesh2_kg.1__215__AT1G02900.1;Name=fgenesh2_kg.1__215__AT1G02900.1
+scaffold_1	JGI_Filtered	mRNA	798586	799140	.	-	.	ID=Transcript:470261;Name=Transcript:470261;Parent=fgenesh2_kg.1__215__AT1G02900.1
+scaffold_1	JGI_Filtered	three_prime_UTR	798586	798780	.	-	.	ID=three_prime_UTR:470261;Parent=Transcript:470261
+scaffold_1	JGI_Filtered	exon	798586	799140	.	-	.	ID=exon:470261;Parent=Transcript:470261
+scaffold_1	JGI_Filtered	CDS	798781	799137	.	-	0	ID=CDS:470261;Parent=Transcript:470261;Name=fgenesh2_kg.1__215__AT1G02900.1
+scaffold_1	JGI_Filtered	five_prime_UTR	799138	799140	.	-	.	ID=five_prime_UTR:470261;Parent=Transcript:470261
+scaffold_1	JGI_Filtered	gene	800563	803042	.	-	.	ID=scaffold_100233.1;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	mRNA	800563	803042	.	-	.	ID=Transcript:918952;Name=Transcript:918952;Parent=scaffold_100233.1
+scaffold_1	JGI_Filtered	three_prime_UTR	800563	800582	.	-	.	ID=three_prime_UTR:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	exon	800563	800657	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	800583	800657	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	800798	800894	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	800798	800894	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	800996	801096	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	800996	801096	.	-	1	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	801186	801374	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	801186	801374	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	801457	801614	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	801457	801614	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	801697	801928	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	801697	801928	.	-	2	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	802012	802147	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	802012	802147	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	802264	802367	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	802264	802367	.	-	1	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	exon	802752	803042	.	-	.	ID=exon:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	CDS	802752	803021	.	-	0	ID=CDS:918952;Parent=Transcript:918952;Name=scaffold_100233.1
+scaffold_1	JGI_Filtered	five_prime_UTR	803022	803042	.	-	.	ID=five_prime_UTR:918952;Parent=Transcript:918952
+scaffold_1	JGI_Filtered	gene	803529	804614	.	-	.	ID=fgenesh2_kg.1__217__AT1G02920.1;Name=fgenesh2_kg.1__217__AT1G02920.1
+scaffold_1	JGI_Filtered	mRNA	803529	804614	.	-	.	ID=Transcript:470263;Name=Transcript:470263;Parent=fgenesh2_kg.1__217__AT1G02920.1
+scaffold_1	JGI_Filtered	three_prime_UTR	803529	803560	.	-	.	ID=three_prime_UTR:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	three_prime_UTR	803578	803641	.	-	.	ID=three_prime_UTR:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	three_prime_UTR	803663	803757	.	-	.	ID=three_prime_UTR:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	exon	803529	803560	.	-	.	ID=exon:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	exon	803578	803641	.	-	.	ID=exon:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	exon	803663	804188	.	-	.	ID=exon:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	CDS	803758	804188	.	-	0	ID=CDS:470263;Parent=Transcript:470263;Name=fgenesh2_kg.1__217__AT1G02920.1
+scaffold_1	JGI_Filtered	exon	804317	804365	.	-	.	ID=exon:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	CDS	804317	804365	.	-	2	ID=CDS:470263;Parent=Transcript:470263;Name=fgenesh2_kg.1__217__AT1G02920.1
+scaffold_1	JGI_Filtered	exon	804455	804614	.	-	.	ID=exon:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	CDS	804455	804604	.	-	0	ID=CDS:470263;Parent=Transcript:470263;Name=fgenesh2_kg.1__217__AT1G02920.1
+scaffold_1	JGI_Filtered	five_prime_UTR	804605	804614	.	-	.	ID=five_prime_UTR:470263;Parent=Transcript:470263
+scaffold_1	JGI_Filtered	gene	806284	807466	.	-	.	ID=fgenesh2_kg.1__218__AT1G02930.1;Name=fgenesh2_kg.1__218__AT1G02930.1
+scaffold_1	JGI_Filtered	mRNA	806284	807466	.	-	.	ID=Transcript:470264;Name=Transcript:470264;Parent=fgenesh2_kg.1__218__AT1G02930.1
+scaffold_1	JGI_Filtered	three_prime_UTR	806284	806340	.	-	.	ID=three_prime_UTR:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	three_prime_UTR	806368	806401	.	-	.	ID=three_prime_UTR:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	exon	806284	806340	.	-	.	ID=exon:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	exon	806368	806829	.	-	.	ID=exon:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	CDS	806402	806829	.	-	0	ID=CDS:470264;Parent=Transcript:470264;Name=fgenesh2_kg.1__218__AT1G02930.1
+scaffold_1	JGI_Filtered	exon	806977	807025	.	-	.	ID=exon:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	CDS	806977	807025	.	-	2	ID=CDS:470264;Parent=Transcript:470264;Name=fgenesh2_kg.1__218__AT1G02930.1
+scaffold_1	JGI_Filtered	exon	807117	807466	.	-	.	ID=exon:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	CDS	807117	807266	.	-	0	ID=CDS:470264;Parent=Transcript:470264;Name=fgenesh2_kg.1__218__AT1G02930.1
+scaffold_1	JGI_Filtered	five_prime_UTR	807267	807466	.	-	.	ID=five_prime_UTR:470264;Parent=Transcript:470264
+scaffold_1	JGI_Filtered	gene	808213	809208	.	-	.	ID=fgenesh1_pg.C_scaffold_1000186;Name=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	mRNA	808213	809208	.	-	.	ID=Transcript:333621;Name=Transcript:333621;Parent=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	exon	808213	808679	.	-	.	ID=exon:333621;Parent=Transcript:333621
+scaffold_1	JGI_Filtered	CDS	808213	808679	.	-	0	ID=CDS:333621;Parent=Transcript:333621;Name=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	exon	808746	808794	.	-	.	ID=exon:333621;Parent=Transcript:333621
+scaffold_1	JGI_Filtered	CDS	808746	808794	.	-	2	ID=CDS:333621;Parent=Transcript:333621;Name=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	exon	808892	809034	.	-	.	ID=exon:333621;Parent=Transcript:333621
+scaffold_1	JGI_Filtered	CDS	808892	809034	.	-	0	ID=CDS:333621;Parent=Transcript:333621;Name=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	exon	809121	809208	.	-	.	ID=exon:333621;Parent=Transcript:333621
+scaffold_1	JGI_Filtered	CDS	809121	809208	.	-	2	ID=CDS:333621;Parent=Transcript:333621;Name=fgenesh1_pg.C_scaffold_1000186
+scaffold_1	JGI_Filtered	gene	810333	811616	.	-	.	ID=fgenesh2_kg.1__222__AT1G02950.2;Name=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	mRNA	810333	811616	.	-	.	ID=Transcript:470268;Name=Transcript:470268;Parent=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	three_prime_UTR	810333	810467	.	-	.	ID=three_prime_UTR:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	exon	810333	810937	.	-	.	ID=exon:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	CDS	810468	810937	.	-	0	ID=CDS:470268;Parent=Transcript:470268;Name=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	exon	811020	811068	.	-	.	ID=exon:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	CDS	811020	811068	.	-	2	ID=CDS:470268;Parent=Transcript:470268;Name=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	exon	811269	811417	.	-	.	ID=exon:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	CDS	811269	811417	.	-	0	ID=CDS:470268;Parent=Transcript:470268;Name=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	exon	811517	811616	.	-	.	ID=exon:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	CDS	811517	811586	.	-	2	ID=CDS:470268;Parent=Transcript:470268;Name=fgenesh2_kg.1__222__AT1G02950.2
+scaffold_1	JGI_Filtered	five_prime_UTR	811587	811616	.	-	.	ID=five_prime_UTR:470268;Parent=Transcript:470268
+scaffold_1	JGI_Filtered	gene	812207	815218	.	-	.	ID=fgenesh2_kg.1__225__AT1G02960.2;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	mRNA	812207	815218	.	-	.	ID=Transcript:470271;Name=Transcript:470271;Parent=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	three_prime_UTR	812207	812274	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	812296	812376	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	812466	812596	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	812720	812811	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	812891	812991	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	813087	813220	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	813309	813434	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	813525	813820	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	813963	814095	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	814231	814353	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	three_prime_UTR	814433	814488	.	-	.	ID=three_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	exon	812207	812274	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	exon	812296	812376	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	exon	812466	812596	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	812466	812596	.	-	1	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	812720	812811	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	812720	812811	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	812891	812991	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	812891	812991	.	-	2	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	813087	813220	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	813087	813220	.	-	1	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	813309	813434	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	813309	813434	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	813525	813820	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	813525	813820	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	813963	814095	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	813963	814095	.	-	2	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	814231	814353	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	814231	814353	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	814433	814488	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	814433	814488	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	814575	814614	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	814575	814614	.	-	2	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	CDS	814575	812376	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	814872	814930	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	814872	814930	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	815018	815048	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	815018	815048	.	-	2	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	exon	815142	815218	.	-	.	ID=exon:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	CDS	815142	815165	.	-	0	ID=CDS:470271;Parent=Transcript:470271;Name=fgenesh2_kg.1__225__AT1G02960.2
+scaffold_1	JGI_Filtered	five_prime_UTR	815166	815218	.	-	.	ID=five_prime_UTR:470271;Parent=Transcript:470271
+scaffold_1	JGI_Filtered	gene	816662	816932	.	+	.	ID=scaffold_100239.1;Name=scaffold_100239.1
+scaffold_1	JGI_Filtered	mRNA	816662	816932	.	+	.	ID=Transcript:918958;Name=Transcript:918958;Parent=scaffold_100239.1
+scaffold_1	JGI_Filtered	five_prime_UTR	816662	816681	.	+	.	ID=five_prime_UTR:918958;Parent=Transcript:918958
+scaffold_1	JGI_Filtered	exon	816662	816932	.	+	.	ID=exon:918958;Parent=Transcript:918958
+scaffold_1	JGI_Filtered	CDS	816682	816912	.	+	0	ID=CDS:918958;Parent=Transcript:918958;Name=scaffold_100239.1
+scaffold_1	JGI_Filtered	three_prime_UTR	816913	816932	.	+	.	ID=three_prime_UTR:918958;Parent=Transcript:918958
+scaffold_1	JGI_Filtered	gene	817056	820017	.	+	.	ID=scaffold_100240.1;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	mRNA	817056	820017	.	+	.	ID=Transcript:918959;Name=Transcript:918959;Parent=scaffold_100240.1
+scaffold_1	JGI_Filtered	five_prime_UTR	817056	817075	.	+	.	ID=five_prime_UTR:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	exon	817056	817374	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	817076	817374	.	+	0	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	817750	817810	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	817750	817810	.	+	2	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	817898	817964	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	817898	817964	.	+	0	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	818308	818571	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	818308	818571	.	+	1	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	818681	818748	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	818681	818748	.	+	1	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	818837	818946	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	818837	818946	.	+	0	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	819058	819098	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	819058	819098	.	+	2	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	819211	819365	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	819211	819365	.	+	1	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	819461	819814	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	819461	819814	.	+	0	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	exon	819913	820017	.	+	.	ID=exon:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	CDS	819913	819996	.	+	0	ID=CDS:918959;Parent=Transcript:918959;Name=scaffold_100240.1
+scaffold_1	JGI_Filtered	three_prime_UTR	819997	820017	.	+	.	ID=three_prime_UTR:918959;Parent=Transcript:918959
+scaffold_1	JGI_Filtered	gene	822113	822439	.	+	.	ID=scaffold_100241.1;Name=scaffold_100241.1
+scaffold_1	JGI_Filtered	mRNA	822113	822439	.	+	.	ID=Transcript:918960;Name=Transcript:918960;Parent=scaffold_100241.1
+scaffold_1	JGI_Filtered	five_prime_UTR	822113	822133	.	+	.	ID=five_prime_UTR:918960;Parent=Transcript:918960
+scaffold_1	JGI_Filtered	exon	822113	822218	.	+	.	ID=exon:918960;Parent=Transcript:918960
+scaffold_1	JGI_Filtered	CDS	822134	822218	.	+	0	ID=CDS:918960;Parent=Transcript:918960;Name=scaffold_100241.1
+scaffold_1	JGI_Filtered	exon	822307	822439	.	+	.	ID=exon:918960;Parent=Transcript:918960
+scaffold_1	JGI_Filtered	CDS	822307	822419	.	+	1	ID=CDS:918960;Parent=Transcript:918960;Name=scaffold_100241.1
+scaffold_1	JGI_Filtered	three_prime_UTR	822420	822439	.	+	.	ID=three_prime_UTR:918960;Parent=Transcript:918960
+scaffold_1	JGI_Filtered	gene	825038	828780	.	+	.	ID=fgenesh1_pm.C_scaffold_1000178;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	mRNA	825038	828780	.	+	.	ID=Transcript:311398;Name=Transcript:311398;Parent=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	825038	825168	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	825038	825168	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	825254	825353	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	825254	825353	.	+	2	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	825444	825629	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	825444	825629	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	825712	825759	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	825712	825759	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	825840	826121	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	825840	826121	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	826295	826384	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	826295	826384	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	826473	826553	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	826473	826553	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	826660	826719	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	826660	826719	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	826809	826925	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	826809	826925	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	827003	827155	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	827003	827155	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	827238	827293	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	827238	827293	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	827401	827521	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	827401	827521	.	+	2	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	827623	827784	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	827623	827784	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	827859	828002	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	827859	828002	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	828129	828347	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	828129	828347	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	828432	828599	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	828432	828599	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	exon	828679	828780	.	+	.	ID=exon:311398;Parent=Transcript:311398
+scaffold_1	JGI_Filtered	CDS	828679	828780	.	+	0	ID=CDS:311398;Parent=Transcript:311398;Name=fgenesh1_pm.C_scaffold_1000178
+scaffold_1	JGI_Filtered	gene	829172	834582	.	-	.	ID=Al_scaffold_0001_215;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	mRNA	829172	834582	.	-	.	ID=Transcript:909961;Name=Transcript:909961;Parent=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	829172	829369	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	829172	829369	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	829739	829899	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	829739	829899	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	830295	830455	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	830295	830455	.	-	2	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	830738	830898	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	830738	830898	.	-	1	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	830982	832366	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	830982	832366	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	832453	833554	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	832453	833554	.	-	2	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	833645	834013	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	833645	834013	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	834095	834195	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	834095	834195	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	834264	834336	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	834264	834336	.	-	2	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	exon	834430	834582	.	-	.	ID=exon:909961;Parent=Transcript:909961
+scaffold_1	JGI_Filtered	CDS	834430	834582	.	-	0	ID=CDS:909961;Parent=Transcript:909961;Name=Al_scaffold_0001_215
+scaffold_1	JGI_Filtered	gene	835648	840282	.	-	.	ID=fgenesh2_kg.1__231__AT1G03000.1;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	mRNA	835648	840282	.	-	.	ID=Transcript:470277;Name=Transcript:470277;Parent=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	three_prime_UTR	835648	835679	.	-	.	ID=three_prime_UTR:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	three_prime_UTR	835716	835762	.	-	.	ID=three_prime_UTR:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	three_prime_UTR	835781	835786	.	-	.	ID=three_prime_UTR:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	exon	835648	835679	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	exon	835716	835762	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	exon	835781	835876	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	835787	835876	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	835960	836040	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	835960	836040	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	836148	836292	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	836148	836292	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	836376	836647	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	836376	836647	.	-	1	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	836734	836856	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	836734	836856	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	836942	837100	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	836942	837100	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	837220	837501	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	837220	837501	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	837671	837859	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	837671	837859	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	838122	838305	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	838122	838305	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	838494	838635	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	838494	838635	.	-	1	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	838859	839102	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	838859	839102	.	-	2	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	839180	839815	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	839180	839815	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	exon	839963	840282	.	-	.	ID=exon:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	CDS	839963	840259	.	-	0	ID=CDS:470277;Parent=Transcript:470277;Name=fgenesh2_kg.1__231__AT1G03000.1
+scaffold_1	JGI_Filtered	five_prime_UTR	840260	840282	.	-	.	ID=five_prime_UTR:470277;Parent=Transcript:470277
+scaffold_1	JGI_Filtered	gene	841280	844038	.	+	.	ID=fgenesh1_pm.C_scaffold_1000181;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	mRNA	841280	844038	.	+	.	ID=Transcript:311401;Name=Transcript:311401;Parent=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	exon	841280	841371	.	+	.	ID=exon:311401;Parent=Transcript:311401
+scaffold_1	JGI_Filtered	CDS	841280	841371	.	+	0	ID=CDS:311401;Parent=Transcript:311401;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	exon	841974	842040	.	+	.	ID=exon:311401;Parent=Transcript:311401
+scaffold_1	JGI_Filtered	CDS	841974	842040	.	+	2	ID=CDS:311401;Parent=Transcript:311401;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	exon	842126	843322	.	+	.	ID=exon:311401;Parent=Transcript:311401
+scaffold_1	JGI_Filtered	CDS	842126	843322	.	+	0	ID=CDS:311401;Parent=Transcript:311401;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	exon	843392	843638	.	+	.	ID=exon:311401;Parent=Transcript:311401
+scaffold_1	JGI_Filtered	CDS	843392	843638	.	+	0	ID=CDS:311401;Parent=Transcript:311401;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	exon	843737	844038	.	+	.	ID=exon:311401;Parent=Transcript:311401
+scaffold_1	JGI_Filtered	CDS	843737	844038	.	+	1	ID=CDS:311401;Parent=Transcript:311401;Name=fgenesh1_pm.C_scaffold_1000181
+scaffold_1	JGI_Filtered	gene	845110	845459	.	-	.	ID=scaffold_100246.1;Name=scaffold_100246.1
+scaffold_1	JGI_Filtered	mRNA	845110	845459	.	-	.	ID=Transcript:918965;Name=Transcript:918965;Parent=scaffold_100246.1
+scaffold_1	JGI_Filtered	three_prime_UTR	845110	845130	.	-	.	ID=three_prime_UTR:918965;Parent=Transcript:918965
+scaffold_1	JGI_Filtered	exon	845110	845459	.	-	.	ID=exon:918965;Parent=Transcript:918965
+scaffold_1	JGI_Filtered	CDS	845131	845439	.	-	0	ID=CDS:918965;Parent=Transcript:918965;Name=scaffold_100246.1
+scaffold_1	JGI_Filtered	five_prime_UTR	845440	845459	.	-	.	ID=five_prime_UTR:918965;Parent=Transcript:918965
+scaffold_1	JGI_Filtered	gene	849099	851591	.	+	.	ID=fgenesh2_kg.1__234__AT1G03030.1;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	mRNA	849099	851591	.	+	.	ID=Transcript:470280;Name=Transcript:470280;Parent=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	five_prime_UTR	849099	849122	.	+	.	ID=five_prime_UTR:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	exon	849099	849174	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	849123	849174	.	+	0	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	849210	849212	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	849210	849212	.	+	1	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	849278	849384	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	849278	849384	.	+	1	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	849456	849499	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	849456	849499	.	+	0	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	849866	849943	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	849866	849943	.	+	2	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850053	850245	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850053	850245	.	+	2	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850336	850366	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850336	850366	.	+	0	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850448	850506	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850448	850506	.	+	1	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850597	850670	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850597	850670	.	+	0	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850782	850868	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850782	850868	.	+	2	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	850958	851019	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	850958	851019	.	+	2	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	851115	851143	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	851115	851143	.	+	1	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	851245	851380	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	CDS	851245	851331	.	+	0	ID=CDS:470280;Parent=Transcript:470280;Name=fgenesh2_kg.1__234__AT1G03030.1
+scaffold_1	JGI_Filtered	exon	851410	851509	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	exon	851562	851591	.	+	.	ID=exon:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	three_prime_UTR	851332	851380	.	+	.	ID=three_prime_UTR:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	three_prime_UTR	851410	851509	.	+	.	ID=three_prime_UTR:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	three_prime_UTR	851562	851591	.	+	.	ID=three_prime_UTR:470280;Parent=Transcript:470280
+scaffold_1	JGI_Filtered	gene	851718	854466	.	-	.	ID=fgenesh2_kg.1__235__AT1G03040.1;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	mRNA	851718	854466	.	-	.	ID=Transcript:470281;Name=Transcript:470281;Parent=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	three_prime_UTR	851718	851830	.	-	.	ID=three_prime_UTR:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	three_prime_UTR	851866	851889	.	-	.	ID=three_prime_UTR:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	three_prime_UTR	851917	852058	.	-	.	ID=three_prime_UTR:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	exon	851718	851830	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	exon	851866	851889	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	exon	851917	852274	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	852059	852274	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	exon	852374	852454	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	852374	852454	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	exon	852848	852913	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	852848	852913	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	exon	853085	853150	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	853085	853150	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	exon	853318	853440	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	853318	853440	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	exon	853929	854466	.	-	.	ID=exon:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	CDS	853929	854297	.	-	0	ID=CDS:470281;Parent=Transcript:470281;Name=fgenesh2_kg.1__235__AT1G03040.1
+scaffold_1	JGI_Filtered	five_prime_UTR	854298	854466	.	-	.	ID=five_prime_UTR:470281;Parent=Transcript:470281
+scaffold_1	JGI_Filtered	gene	855547	857859	.	+	.	ID=fgenesh2_kg.1__236__AT1G03050.1;Name=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	mRNA	855547	857859	.	+	.	ID=Transcript:470282;Name=Transcript:470282;Parent=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	exon	855547	856010	.	+	.	ID=exon:470282;Parent=Transcript:470282
+scaffold_1	JGI_Filtered	CDS	855547	856010	.	+	0	ID=CDS:470282;Parent=Transcript:470282;Name=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	exon	856127	856327	.	+	.	ID=exon:470282;Parent=Transcript:470282
+scaffold_1	JGI_Filtered	CDS	856127	856327	.	+	2	ID=CDS:470282;Parent=Transcript:470282;Name=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	exon	856419	857290	.	+	.	ID=exon:470282;Parent=Transcript:470282
+scaffold_1	JGI_Filtered	CDS	856419	857290	.	+	2	ID=CDS:470282;Parent=Transcript:470282;Name=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	exon	857423	857859	.	+	.	ID=exon:470282;Parent=Transcript:470282
+scaffold_1	JGI_Filtered	CDS	857423	857685	.	+	1	ID=CDS:470282;Parent=Transcript:470282;Name=fgenesh2_kg.1__236__AT1G03050.1
+scaffold_1	JGI_Filtered	three_prime_UTR	857686	857859	.	+	.	ID=three_prime_UTR:470282;Parent=Transcript:470282
+scaffold_1	JGI_Filtered	gene	857844	859616	.	-	.	ID=fgenesh2_kg.1__237__AT1G03055.1;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	mRNA	857844	859616	.	-	.	ID=Transcript:470283;Name=Transcript:470283;Parent=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	three_prime_UTR	857844	857928	.	-	.	ID=three_prime_UTR:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	exon	857844	857963	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	857929	857963	.	-	0	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	858071	858163	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	858071	858163	.	-	2	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	858487	858593	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	858487	858593	.	-	2	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	858762	858823	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	858762	858823	.	-	1	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	858913	859005	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	858913	859005	.	-	0	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	859082	859227	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	859082	859227	.	-	0	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	859326	859584	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	CDS	859326	859584	.	-	2	ID=CDS:470283;Parent=Transcript:470283;Name=fgenesh2_kg.1__237__AT1G03055.1
+scaffold_1	JGI_Filtered	exon	859597	859616	.	-	.	ID=exon:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	five_prime_UTR	859597	859616	.	-	.	ID=five_prime_UTR:470283;Parent=Transcript:470283
+scaffold_1	JGI_Filtered	gene	860953	874764	.	-	.	ID=fgenesh1_pm.C_scaffold_1000187;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	mRNA	860953	874764	.	-	.	ID=Transcript:311407;Name=Transcript:311407;Parent=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	860953	862188	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	860953	862188	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	862300	862446	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	862300	862446	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	862541	862847	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	862541	862847	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	863005	863313	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	863005	863313	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	863660	866665	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	863660	866665	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	866936	868586	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	866936	868586	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	868682	869796	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	868682	869796	.	-	2	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	869905	870007	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	869905	870007	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	870115	870814	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	870115	870814	.	-	2	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	870964	872129	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	870964	872129	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	872286	872400	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	872286	872400	.	-	2	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	872572	872637	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	872572	872637	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	872780	872971	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	872780	872971	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	873119	873292	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	873119	873292	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	873437	873493	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	873437	873493	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	873574	873709	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	873574	873709	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	873886	873971	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	873886	873971	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	874133	874205	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	874133	874205	.	-	0	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	exon	874583	874764	.	-	.	ID=exon:311407;Parent=Transcript:311407
+scaffold_1	JGI_Filtered	CDS	874583	874764	.	-	1	ID=CDS:311407;Parent=Transcript:311407;Name=fgenesh1_pm.C_scaffold_1000187
+scaffold_1	JGI_Filtered	gene	878780	880389	.	+	.	ID=fgenesh2_kg.1__240__AT1G03070.1;Name=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	mRNA	878780	880389	.	+	.	ID=Transcript:470286;Name=Transcript:470286;Parent=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	five_prime_UTR	878780	878821	.	+	.	ID=five_prime_UTR:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	five_prime_UTR	878841	878855	.	+	.	ID=five_prime_UTR:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	five_prime_UTR	878973	878975	.	+	.	ID=five_prime_UTR:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	exon	878780	878821	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	exon	878841	878855	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	exon	878973	879240	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	CDS	878976	879240	.	+	0	ID=CDS:470286;Parent=Transcript:470286;Name=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	exon	879333	879446	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	CDS	879333	879446	.	+	1	ID=CDS:470286;Parent=Transcript:470286;Name=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	exon	879741	879898	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	CDS	879741	879898	.	+	1	ID=CDS:470286;Parent=Transcript:470286;Name=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	exon	880015	880389	.	+	.	ID=exon:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	CDS	880015	880218	.	+	0	ID=CDS:470286;Parent=Transcript:470286;Name=fgenesh2_kg.1__240__AT1G03070.1
+scaffold_1	JGI_Filtered	three_prime_UTR	880219	880389	.	+	.	ID=three_prime_UTR:470286;Parent=Transcript:470286
+scaffold_1	JGI_Filtered	gene	880540	886200	.	-	.	ID=fgenesh2_kg.1__241__AT1G03080.1;Name=fgenesh2_kg.1__241__AT1G03080.1
+scaffold_1	JGI_Filtered	mRNA	880540	886200	.	-	.	ID=Transcript:470287;Name=Transcript:470287;Parent=fgenesh2_kg.1__241__AT1G03080.1
+scaffold_1	JGI_Filtered	three_prime_UTR	880540	880629	.	-	.	ID=three_prime_UTR:470287;Parent=Transcript:470287
+scaffold_1	JGI_Filtered	exon	880540	881577	.	-	.	ID=exon:470287;Parent=Transcript:470287
+scaffold_1	JGI_Filtered	CDS	880630	881577	.	-	0	ID=CDS:470287;Parent=Transcript:470287;Name=fgenesh2_kg.1__241__AT1G03080.1
+scaffold_1	JGI_Filtered	exon	881766	885928	.	-	.	ID=exon:470287;Parent=Transcript:470287
+scaffold_1	JGI_Filtered	CDS	881766	885928	.	-	0	ID=CDS:470287;Parent=Transcript:470287;Name=fgenesh2_kg.1__241__AT1G03080.1
+scaffold_1	JGI_Filtered	exon	886101	886200	.	-	.	ID=exon:470287;Parent=Transcript:470287
+scaffold_1	JGI_Filtered	CDS	886101	886200	.	-	2	ID=CDS:470287;Parent=Transcript:470287;Name=fgenesh2_kg.1__241__AT1G03080.1
+scaffold_1	JGI_Filtered	gene	890089	894796	.	+	.	ID=fgenesh2_kg.1__243__AT1G03090.2;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	mRNA	890089	894796	.	+	.	ID=Transcript:470289;Name=Transcript:470289;Parent=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	five_prime_UTR	890089	890117	.	+	.	ID=five_prime_UTR:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	exon	890089	890205	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	890118	890205	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	890221	890468	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	890221	890468	.	+	1	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	890570	890691	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	890570	890691	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	890792	890939	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	890792	890939	.	+	2	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	891150	891287	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	891150	891287	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	891510	891605	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	891510	891605	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	891692	891751	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	891692	891751	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	892060	892152	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	892060	892152	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	892235	892346	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	892235	892346	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	892540	892644	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	892540	892644	.	+	1	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	892779	892915	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	892779	892915	.	+	1	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	893106	893340	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	893106	893340	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	893424	893584	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	893424	893584	.	+	1	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	893721	893834	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	893721	893834	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	893936	894181	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	893936	894181	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	894270	894366	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	894270	894366	.	+	0	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	894465	894621	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	CDS	894465	894469	.	+	1	ID=CDS:470289;Parent=Transcript:470289;Name=fgenesh2_kg.1__243__AT1G03090.2
+scaffold_1	JGI_Filtered	exon	894623	894796	.	+	.	ID=exon:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	three_prime_UTR	894470	894621	.	+	.	ID=three_prime_UTR:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	three_prime_UTR	894623	894796	.	+	.	ID=three_prime_UTR:470289;Parent=Transcript:470289
+scaffold_1	JGI_Filtered	gene	897857	898568	.	+	.	ID=fgenesh1_pm.C_scaffold_1000192;Name=fgenesh1_pm.C_scaffold_1000192
+scaffold_1	JGI_Filtered	mRNA	897857	898568	.	+	.	ID=Transcript:311412;Name=Transcript:311412;Parent=fgenesh1_pm.C_scaffold_1000192
+scaffold_1	JGI_Filtered	exon	897857	898169	.	+	.	ID=exon:311412;Parent=Transcript:311412
+scaffold_1	JGI_Filtered	CDS	897857	898169	.	+	0	ID=CDS:311412;Parent=Transcript:311412;Name=fgenesh1_pm.C_scaffold_1000192
+scaffold_1	JGI_Filtered	exon	898271	898345	.	+	.	ID=exon:311412;Parent=Transcript:311412
+scaffold_1	JGI_Filtered	CDS	898271	898345	.	+	1	ID=CDS:311412;Parent=Transcript:311412;Name=fgenesh1_pm.C_scaffold_1000192
+scaffold_1	JGI_Filtered	exon	898468	898568	.	+	.	ID=exon:311412;Parent=Transcript:311412
+scaffold_1	JGI_Filtered	CDS	898468	898568	.	+	1	ID=CDS:311412;Parent=Transcript:311412;Name=fgenesh1_pm.C_scaffold_1000192
+scaffold_1	JGI_Filtered	gene	899012	901473	.	+	.	ID=scaffold_100257.1;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	mRNA	899012	901473	.	+	.	ID=Transcript:918976;Name=Transcript:918976;Parent=scaffold_100257.1
+scaffold_1	JGI_Filtered	five_prime_UTR	899012	899032	.	+	.	ID=five_prime_UTR:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	exon	899012	899169	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	899033	899169	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	899439	899603	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	899439	899603	.	+	2	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	899775	899955	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	899775	899955	.	+	2	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900074	900130	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900074	900130	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900214	900284	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900214	900284	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900444	900522	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900444	900522	.	+	2	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900605	900664	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900605	900664	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900778	900881	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900778	900881	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	900957	901017	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	900957	901017	.	+	2	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	exon	901088	901473	.	+	.	ID=exon:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	CDS	901088	901453	.	+	0	ID=CDS:918976;Parent=Transcript:918976;Name=scaffold_100257.1
+scaffold_1	JGI_Filtered	three_prime_UTR	901454	901473	.	+	.	ID=three_prime_UTR:918976;Parent=Transcript:918976
+scaffold_1	JGI_Filtered	gene	903002	903965	.	+	.	ID=Al_scaffold_0001_230;Name=Al_scaffold_0001_230
+scaffold_1	JGI_Filtered	mRNA	903002	903965	.	+	.	ID=Transcript:909976;Name=Transcript:909976;Parent=Al_scaffold_0001_230
+scaffold_1	JGI_Filtered	exon	903002	903313	.	+	.	ID=exon:909976;Parent=Transcript:909976
+scaffold_1	JGI_Filtered	CDS	903002	903313	.	+	0	ID=CDS:909976;Parent=Transcript:909976;Name=Al_scaffold_0001_230
+scaffold_1	JGI_Filtered	exon	903430	903465	.	+	.	ID=exon:909976;Parent=Transcript:909976
+scaffold_1	JGI_Filtered	CDS	903430	903465	.	+	0	ID=CDS:909976;Parent=Transcript:909976;Name=Al_scaffold_0001_230
+scaffold_1	JGI_Filtered	exon	903807	903965	.	+	.	ID=exon:909976;Parent=Transcript:909976
+scaffold_1	JGI_Filtered	CDS	903807	903965	.	+	0	ID=CDS:909976;Parent=Transcript:909976;Name=Al_scaffold_0001_230
+scaffold_1	JGI_Filtered	gene	904253	904913	.	-	.	ID=scaffold_100259.1;Name=scaffold_100259.1
+scaffold_1	JGI_Filtered	mRNA	904253	904913	.	-	.	ID=Transcript:918978;Name=Transcript:918978;Parent=scaffold_100259.1
+scaffold_1	JGI_Filtered	three_prime_UTR	904253	904272	.	-	.	ID=three_prime_UTR:918978;Parent=Transcript:918978
+scaffold_1	JGI_Filtered	exon	904253	904913	.	-	.	ID=exon:918978;Parent=Transcript:918978
+scaffold_1	JGI_Filtered	CDS	904273	904890	.	-	0	ID=CDS:918978;Parent=Transcript:918978;Name=scaffold_100259.1
+scaffold_1	JGI_Filtered	five_prime_UTR	904891	904913	.	-	.	ID=five_prime_UTR:918978;Parent=Transcript:918978
+scaffold_1	JGI_Filtered	gene	905189	906974	.	-	.	ID=scaffold_100260.1;Name=scaffold_100260.1
+scaffold_1	JGI_Filtered	mRNA	905189	906974	.	-	.	ID=Transcript:918979;Name=Transcript:918979;Parent=scaffold_100260.1
+scaffold_1	JGI_Filtered	three_prime_UTR	905189	905209	.	-	.	ID=three_prime_UTR:918979;Parent=Transcript:918979
+scaffold_1	JGI_Filtered	exon	905189	905629	.	-	.	ID=exon:918979;Parent=Transcript:918979
+scaffold_1	JGI_Filtered	CDS	905210	905629	.	-	0	ID=CDS:918979;Parent=Transcript:918979;Name=scaffold_100260.1
+scaffold_1	JGI_Filtered	exon	906121	906974	.	-	.	ID=exon:918979;Parent=Transcript:918979
+scaffold_1	JGI_Filtered	CDS	906121	906954	.	-	0	ID=CDS:918979;Parent=Transcript:918979;Name=scaffold_100260.1
+scaffold_1	JGI_Filtered	five_prime_UTR	906955	906974	.	-	.	ID=five_prime_UTR:918979;Parent=Transcript:918979
+scaffold_1	JGI_Filtered	gene	907163	909323	.	+	.	ID=scaffold_100261.1;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	mRNA	907163	909323	.	+	.	ID=Transcript:918980;Name=Transcript:918980;Parent=scaffold_100261.1
+scaffold_1	JGI_Filtered	five_prime_UTR	907163	907182	.	+	.	ID=five_prime_UTR:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	exon	907163	907260	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	907183	907260	.	+	0	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	exon	907366	907456	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	907366	907456	.	+	0	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	exon	908435	908567	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	908435	908567	.	+	1	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	exon	908809	908878	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	908809	908878	.	+	2	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	exon	909062	909122	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	909062	909122	.	+	0	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	exon	909212	909323	.	+	.	ID=exon:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	CDS	909212	909303	.	+	1	ID=CDS:918980;Parent=Transcript:918980;Name=scaffold_100261.1
+scaffold_1	JGI_Filtered	three_prime_UTR	909304	909323	.	+	.	ID=three_prime_UTR:918980;Parent=Transcript:918980
+scaffold_1	JGI_Filtered	gene	912940	913637	.	-	.	ID=fgenesh1_pg.C_scaffold_1000207;Name=fgenesh1_pg.C_scaffold_1000207
+scaffold_1	JGI_Filtered	mRNA	912940	913637	.	-	.	ID=Transcript:333642;Name=Transcript:333642;Parent=fgenesh1_pg.C_scaffold_1000207
+scaffold_1	JGI_Filtered	exon	912940	913292	.	-	.	ID=exon:333642;Parent=Transcript:333642
+scaffold_1	JGI_Filtered	CDS	912940	913292	.	-	0	ID=CDS:333642;Parent=Transcript:333642;Name=fgenesh1_pg.C_scaffold_1000207
+scaffold_1	JGI_Filtered	exon	913373	913637	.	-	.	ID=exon:333642;Parent=Transcript:333642
+scaffold_1	JGI_Filtered	CDS	913373	913637	.	-	2	ID=CDS:333642;Parent=Transcript:333642;Name=fgenesh1_pg.C_scaffold_1000207
+scaffold_1	JGI_Filtered	gene	915290	920350	.	+	.	ID=fgenesh2_kg.1__249__AT1G03160.1;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	mRNA	915290	920350	.	+	.	ID=Transcript:470295;Name=Transcript:470295;Parent=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	five_prime_UTR	915290	915314	.	+	.	ID=five_prime_UTR:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	exon	915290	915804	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	915315	915804	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	915902	916440	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	915902	916440	.	+	1	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	916559	916627	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	916559	916627	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	917198	917395	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	917198	917395	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	917482	917613	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	917482	917613	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	918163	918249	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	918163	918249	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	918340	918780	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	918340	918780	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	918881	919048	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	918881	919048	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	919224	919454	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	919224	919454	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	919678	919793	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	919678	919793	.	+	0	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	exon	919950	920350	.	+	.	ID=exon:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	CDS	919950	920250	.	+	2	ID=CDS:470295;Parent=Transcript:470295;Name=fgenesh2_kg.1__249__AT1G03160.1
+scaffold_1	JGI_Filtered	three_prime_UTR	920251	920350	.	+	.	ID=three_prime_UTR:470295;Parent=Transcript:470295
+scaffold_1	JGI_Filtered	gene	923754	924537	.	+	.	ID=scaffold_100263.1;Name=scaffold_100263.1
+scaffold_1	JGI_Filtered	mRNA	923754	924537	.	+	.	ID=Transcript:918982;Name=Transcript:918982;Parent=scaffold_100263.1
+scaffold_1	JGI_Filtered	five_prime_UTR	923754	923773	.	+	.	ID=five_prime_UTR:918982;Parent=Transcript:918982
+scaffold_1	JGI_Filtered	exon	923754	924537	.	+	.	ID=exon:918982;Parent=Transcript:918982
+scaffold_1	JGI_Filtered	CDS	923774	924517	.	+	0	ID=CDS:918982;Parent=Transcript:918982;Name=scaffold_100263.1
+scaffold_1	JGI_Filtered	three_prime_UTR	924518	924537	.	+	.	ID=three_prime_UTR:918982;Parent=Transcript:918982
+scaffold_1	JGI_Filtered	gene	928527	930332	.	+	.	ID=fgenesh2_kg.1__251__AT1G03180.1;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	mRNA	928527	930332	.	+	.	ID=Transcript:470297;Name=Transcript:470297;Parent=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	five_prime_UTR	928527	928596	.	+	.	ID=five_prime_UTR:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	five_prime_UTR	928618	928635	.	+	.	ID=five_prime_UTR:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	exon	928527	928596	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	exon	928618	928778	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	928636	928778	.	+	0	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	929219	929276	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	929219	929276	.	+	2	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	929356	929664	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	929356	929664	.	+	0	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	929763	929811	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	929763	929811	.	+	0	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	929892	929986	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	929892	929986	.	+	1	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	930065	930144	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	930065	930144	.	+	0	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	exon	930218	930332	.	+	.	ID=exon:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	CDS	930218	930275	.	+	2	ID=CDS:470297;Parent=Transcript:470297;Name=fgenesh2_kg.1__251__AT1G03180.1
+scaffold_1	JGI_Filtered	three_prime_UTR	930276	930332	.	+	.	ID=three_prime_UTR:470297;Parent=Transcript:470297
+scaffold_1	JGI_Filtered	gene	930603	930956	.	+	.	ID=scaffold_100265.1;Name=scaffold_100265.1
+scaffold_1	JGI_Filtered	mRNA	930603	930956	.	+	.	ID=Transcript:918984;Name=Transcript:918984;Parent=scaffold_100265.1
+scaffold_1	JGI_Filtered	five_prime_UTR	930603	930626	.	+	.	ID=five_prime_UTR:918984;Parent=Transcript:918984
+scaffold_1	JGI_Filtered	exon	930603	930956	.	+	.	ID=exon:918984;Parent=Transcript:918984
+scaffold_1	JGI_Filtered	CDS	930627	930935	.	+	0	ID=CDS:918984;Parent=Transcript:918984;Name=scaffold_100265.1
+scaffold_1	JGI_Filtered	three_prime_UTR	930936	930956	.	+	.	ID=three_prime_UTR:918984;Parent=Transcript:918984
+scaffold_1	JGI_Filtered	gene	930976	935010	.	+	.	ID=fgenesh2_kg.1__253__AT1G03190.1;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	mRNA	930976	935010	.	+	.	ID=Transcript:470299;Name=Transcript:470299;Parent=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	five_prime_UTR	930976	930989	.	+	.	ID=five_prime_UTR:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	exon	930976	931523	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	930990	931523	.	+	0	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	931664	931944	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	931664	931944	.	+	0	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	932247	932329	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	932247	932329	.	+	2	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	932436	932839	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	932436	932839	.	+	1	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	932973	933166	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	932973	933166	.	+	0	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	933254	933434	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	933254	933434	.	+	2	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	933586	933710	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	933586	933710	.	+	0	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	933879	933968	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	933879	933968	.	+	2	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	934075	934153	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	934075	934153	.	+	2	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	934248	934324	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	934248	934324	.	+	0	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	934525	934631	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	934525	934631	.	+	2	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	934730	934886	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	CDS	934730	934851	.	+	1	ID=CDS:470299;Parent=Transcript:470299;Name=fgenesh2_kg.1__253__AT1G03190.1
+scaffold_1	JGI_Filtered	exon	934900	935010	.	+	.	ID=exon:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	three_prime_UTR	934852	934886	.	+	.	ID=three_prime_UTR:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	three_prime_UTR	934900	935010	.	+	.	ID=three_prime_UTR:470299;Parent=Transcript:470299
+scaffold_1	JGI_Filtered	gene	938460	939704	.	+	.	ID=fgenesh1_pm.C_scaffold_1000202;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	mRNA	938460	939704	.	+	.	ID=Transcript:311422;Name=Transcript:311422;Parent=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	exon	938460	938693	.	+	.	ID=exon:311422;Parent=Transcript:311422
+scaffold_1	JGI_Filtered	CDS	938460	938693	.	+	0	ID=CDS:311422;Parent=Transcript:311422;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	exon	938841	939104	.	+	.	ID=exon:311422;Parent=Transcript:311422
+scaffold_1	JGI_Filtered	CDS	938841	939104	.	+	0	ID=CDS:311422;Parent=Transcript:311422;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	exon	939200	939361	.	+	.	ID=exon:311422;Parent=Transcript:311422
+scaffold_1	JGI_Filtered	CDS	939200	939361	.	+	0	ID=CDS:311422;Parent=Transcript:311422;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	exon	939394	939477	.	+	.	ID=exon:311422;Parent=Transcript:311422
+scaffold_1	JGI_Filtered	CDS	939394	939477	.	+	0	ID=CDS:311422;Parent=Transcript:311422;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	exon	939597	939704	.	+	.	ID=exon:311422;Parent=Transcript:311422
+scaffold_1	JGI_Filtered	CDS	939597	939704	.	+	0	ID=CDS:311422;Parent=Transcript:311422;Name=fgenesh1_pm.C_scaffold_1000202
+scaffold_1	JGI_Filtered	gene	940106	941321	.	-	.	ID=scaffold_100268.1;Name=scaffold_100268.1
+scaffold_1	JGI_Filtered	mRNA	940106	941321	.	-	.	ID=Transcript:918987;Name=Transcript:918987;Parent=scaffold_100268.1
+scaffold_1	JGI_Filtered	three_prime_UTR	940106	940125	.	-	.	ID=three_prime_UTR:918987;Parent=Transcript:918987
+scaffold_1	JGI_Filtered	exon	940106	940528	.	-	.	ID=exon:918987;Parent=Transcript:918987
+scaffold_1	JGI_Filtered	CDS	940126	940528	.	-	0	ID=CDS:918987;Parent=Transcript:918987;Name=scaffold_100268.1
+scaffold_1	JGI_Filtered	exon	940628	940686	.	-	.	ID=exon:918987;Parent=Transcript:918987
+scaffold_1	JGI_Filtered	CDS	940628	940686	.	-	1	ID=CDS:918987;Parent=Transcript:918987;Name=scaffold_100268.1
+scaffold_1	JGI_Filtered	exon	941262	941321	.	-	.	ID=exon:918987;Parent=Transcript:918987
+scaffold_1	JGI_Filtered	CDS	941262	941300	.	-	0	ID=CDS:918987;Parent=Transcript:918987;Name=scaffold_100268.1
+scaffold_1	JGI_Filtered	five_prime_UTR	941301	941321	.	-	.	ID=five_prime_UTR:918987;Parent=Transcript:918987
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/Feature_ID_mapping_R.txt	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,18 @@
+-------------------------------------------------------
+GFFExamine started on Mon Apr 18 13:14:06 2011
+-------------------------------------------------------
+
+===Report on different level features from GFF file===
+
+FIRST level feature(s):
+	('JGI_Filtered', 'gene')
+
+SECOND level feature(s):
+	('JGI_Filtered', 'mRNA')
+
+THIRD level feature(s):
+	('JGI_Filtered', 'CDS'), ('JGI_Filtered', 'exon'), ('JGI_Filtered', 'five_prime_UTR'), ('JGI_Filtered', 'three_prime_UTR')
+
+-------------------------------------------------------
+GFFExamine finished at Mon Apr 18 13:14:07 2011
+-------------------------------------------------------
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/Feature_ID_mapping_W.gff3	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,9 @@
+I	Coding_transcript	gene	2064302	2064690	.	+	.	Alias=Y37E3.3;ID=Gene:WBGene00021347;Name=WBGene00021347
+I	Coding_transcript	mRNA	2064302	2064690	.	+	.	Alias=WBGene00021347;prediction_status=Confirmed;Note=Y37E3.3;Dbxref=CDS:Y37E3.3;Dbxref=WormPep:WP:CE26662;ID=Transcript:Y37E3.3;Parent=Gene:WBGene00021347;Name=Y37E3.3
+I	Coding_transcript	five_prime_UTR	2064302	2064306	.	+	.	ID=32606;Parent=Transcript:Y37E3.3;Name=Y37E3.3
+I	Coding_transcript	CDS	2064307	2064400	.	+	.	ID=32607;Parent=Transcript:Y37E3.3;Name=Y37E3.3
+I	Coding_transcript	CDS	2064452	2064561	.	+	2	ID=32608;Parent=Transcript:Y37E3.3;Name=Y37E3.3
+I	Coding_transcript	three_prime_UTR	2064562	2064690	.	+	.	ID=32609;Parent=Transcript:Y37E3.3;Name=Y37E3.3
+I	Coding_transcript	exon	2064302	2064400	.	+	.	ID=71751;Parent=Gene:WBGene00021347
+I	Coding_transcript	exon	2064452	2064690	.	+	.	ID=71752;Parent=Gene:WBGene00021347
+I	Coding_transcript	intron	2064401	2064451	.	+	.	confirmed_est=yk498f7.3;ID=71753;Parent=Gene:WBGene00021347
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/Feature_ID_mapping_W.txt	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,23 @@
+-------------------------------------------------------
+GFFExamine started on Mon Apr 18 13:17:17 2011
+-------------------------------------------------------
+
+===Report on different level features from GFF file===
+
+FIRST level feature(s):
+	('Coding_transcript', 'gene')
+
+SECOND level feature(s):
+	('Coding_transcript', 'mRNA')
+
+THIRD level feature(s):
+	('Coding_transcript', 'CDS'), ('Coding_transcript', 'five_prime_UTR'), ('Coding_transcript', 'three_prime_UTR')
+
+GFF Parsing modules from publicly available packages like Bio-python, Bio-perl etc. are heavily dependent on feature identifier mapping.
+Here few features seems to be wrongly mapped to its child, which inturn cause problems while extracting the annotation based on feature identifier.
+
+Error in ID mapping: Level1 feature ('Coding_transcript', 'gene') maps to Level3 feature ('Coding_transcript', 'exon')
+Error in ID mapping: Level1 feature ('Coding_transcript', 'gene') maps to Level3 feature ('Coding_transcript', 'intron')
+-------------------------------------------------------
+GFFExamine finished at Mon Apr 18 13:17:17 2011
+-------------------------------------------------------
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/GFF_2_Source.gff3	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,34 @@
+##gff-version 3
+1	gencode	gene	11874	14412	.	+	.	ID=Gene:gene:ENSG00000223972;Name=Gene:gene:ENSG00000223972
+1	gencode	mRNA	11874	14412	.	+	.	ID=Transcript:gene:ENSG00000223972.1;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
+1	gencode	five_prime_UTR	11874	12227	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	five_prime_UTR	12613	12721	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	five_prime_UTR	13221	14158	.	+	.	ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	CDS	14159	14389	.	+	0	ID=CDS:gene:ENSG00000223972.1;Name=CDS:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	three_prime_UTR	14390	14412	.	+	.	ID=three_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	11874	12227	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	12613	12721	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	exon	13221	14412	.	+	.	ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
+1	gencode	mRNA	12010	13670	.	+	.	ID=Transcript:gene:ENSG00000223972.2;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
+1	gencode	exon	12010	12057	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12179	12227	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12613	12697	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	12975	13052	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	13221	13374	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+1	gencode	exon	13453	13670	.	+	.	ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
+scaffold_1	JGI_Filtered	gene	47	2523	.	-	.	ID=scaffold_100001.1;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	mRNA	47	2523	.	-	.	ID=Transcript:918720;Name=Transcript:918720;Parent=scaffold_100001.1
+scaffold_1	JGI_Filtered	three_prime_UTR	47	66	.	-	.	ID=three_prime_UTR:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	exon	47	252	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	67	252	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	407	782	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	407	782	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1423	1642	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1423	1642	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	1803	2035	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	1803	2035	.	-	2	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2124	2347	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2124	2347	.	-	1	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	exon	2444	2523	.	-	.	ID=exon:918720;Parent=Transcript:918720
+scaffold_1	JGI_Filtered	CDS	2444	2503	.	-	0	ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
+scaffold_1	JGI_Filtered	five_prime_UTR	2504	2523	.	-	.	ID=five_prime_UTR:918720;Parent=Transcript:918720
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fml_gff_groomer/t/GFF_2_Source_FeatureScan.txt	Tue Jun 07 17:29:24 2011 -0400
@@ -0,0 +1,39 @@
+-------------------------------------------------------
+FeatureScan started on Mon Apr 18 13:39:10 2011
+-------------------------------------------------------
+
+==Overview of available source(s) and feature type(s) from GFF file==
+
+Chromosome identifier(s) and corresponding count:
+	1	17
+	scaffold_1	16
+
+Source(s) of feature and corresponding count:
+	JGI_Filtered	16
+	gencode	17
+
+Feature type(s) and corresponding count:
+	7	CDS
+	15	exon
+	4	five_prime_UTR
+	2	gene
+	3	mRNA
+	2	three_prime_UTR
+
+Unique combination of Feature type(s), Source(s) and corresponding count:
+	6	JGI_Filtered, CDS
+	6	JGI_Filtered, exon
+	1	JGI_Filtered, five_prime_UTR
+	1	JGI_Filtered, gene
+	1	JGI_Filtered, mRNA
+	1	JGI_Filtered, three_prime_UTR
+	1	gencode, CDS
+	9	gencode, exon
+	3	gencode, five_prime_UTR
+	1	gencode, gene
+	2	gencode, mRNA
+	1	gencode, three_prime_UTR
+
+-------------------------------------------------------
+FeatureScan finished at Mon Apr 18 13:39:10 2011
+-------------------------------------------------------