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annotate rDiff/bin/rdiff_config.sh.sample @ 2:233c30f91d66

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updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 07:15:44 -0400
parents 0f80a5141704
children
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1 #!/bin/bash
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2 export RDIFF_VERSION=0.3
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3 export RDIFF_PATH=/home/galaxy/software/
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4 export RDIFF_SRC_PATH=${RDIFF_PATH}/src
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5 export RDIFF_BIN_PATH=${RDIFF_PATH}/bin
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6 export RDIFF_INTERPRETER=octave
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7 export RDIFF_OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave
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8 export RDIFF_OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile
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9 export MATLAB_BIN_PATH=
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10 export MATLAB_MEX_PATH=
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11 export MATLAB_INCLUDE_DIR=
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12 export RDIFF_SAMTOOLS_BIN_DIR=/home/galaxy/software/samtools-0.1.17/samtools
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13 export RDIFF_SAMTOOLS_LIB_DIR=/home/galaxy/software/samtools-0.1.17/
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14 export RDIFF_SAMTOOLS_INCLUDE_DIR=/home/galaxy/software/samtools-0.1.17/
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15 export RDIFF_PYTHON_PATH=/usr/bin/python