diff rDiff/mex/Makefile @ 0:0f80a5141704

version 0.3 uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rDiff/mex/Makefile	Thu Feb 14 23:38:36 2013 -0500
@@ -0,0 +1,24 @@
+include ../bin/rdiff_config.sh
+
+all:	get_reads.mex interval_overlap.mex get_reads.mexa64 interval_overlap.mexa64
+octave:	get_reads.mex interval_overlap.mex
+matlab:	get_reads.mexa64 interval_overlap.mexa64
+
+
+get_reads.mexa64:	get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
+	rm -f *.o
+	${MATLAB_MEX_PATH} -g -O get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses -I$(RDIFF_MATLAB_INCLUDE_DIR)
+
+interval_overlap.mexa64:	interval_overlap.cpp
+	${MATLAB_MEX_PATH} -g -O interval_overlap.cpp -I$(RDIFF_MATLAB_INCLUDE_DIR)
+
+get_reads.mex:	get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
+	rm -f *.o
+	${RDIFF_OCTAVE_MKOCT} -g --mex get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses
+
+interval_overlap.mex: interval_overlap.cpp
+	rm -f *.o
+	${RDIFF_OCTAVE_MKOCT} -g --mex interval_overlap.cpp
+
+clean:	
+	rm -f *.o *.mexa64 *.mex