annotate rDiff/mex/Makefile @ 0:0f80a5141704

version 0.3 uploaded
author vipints
date Thu, 14 Feb 2013 23:38:36 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
1 include ../bin/rdiff_config.sh
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
2
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
3 all: get_reads.mex interval_overlap.mex get_reads.mexa64 interval_overlap.mexa64
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
4 octave: get_reads.mex interval_overlap.mex
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
5 matlab: get_reads.mexa64 interval_overlap.mexa64
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
6
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
7
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
8 get_reads.mexa64: get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
9 rm -f *.o
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
10 ${MATLAB_MEX_PATH} -g -O get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses -I$(RDIFF_MATLAB_INCLUDE_DIR)
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
11
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
12 interval_overlap.mexa64: interval_overlap.cpp
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
13 ${MATLAB_MEX_PATH} -g -O interval_overlap.cpp -I$(RDIFF_MATLAB_INCLUDE_DIR)
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
14
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
15 get_reads.mex: get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
16 rm -f *.o
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
17 ${RDIFF_OCTAVE_MKOCT} -g --mex get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
18
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
19 interval_overlap.mex: interval_overlap.cpp
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
20 rm -f *.o
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
21 ${RDIFF_OCTAVE_MKOCT} -g --mex interval_overlap.cpp
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
22
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
23 clean:
0f80a5141704 version 0.3 uploaded
vipints
parents:
diff changeset
24 rm -f *.o *.mexa64 *.mex