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1 <tool id="fileinfo" name="Retrieve File Information">
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2 <description>for supported data formats.</description>
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3 <requirements>
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4 <requirement type="package" version="0.1.5">mimodd</requirement>
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5 </requirements>
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6 <version_command>mimodd version -q</version_command>
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7 <command>
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8 mimodd info $ifile -o $outputfile --verbose --oformat $oformat
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9 </command>
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10
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11 <inputs>
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12 <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" />
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13 <param name="oformat" type="select" label="output format">
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14 <option value="txt">text</option>
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15 <option value="html">html</option>
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16 </param>
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17 </inputs>
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18
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19 <outputs>
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20 <data name="outputfile" format="txt" label="Sample Info on ${on_string}">
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21 <change_format>
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22 <when input="oformat" value="html" format="html"/>
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23 </change_format>
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24 </data>
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25 </outputs>
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26
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27 <help>
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28 .. class:: infomark
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29
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30 **What it does**
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31
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32 The tool inspects the input file and generates a report summarizing its contents.
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33
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34 It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them.
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35
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36 </help>
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37 </tool>
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