Mercurial > repos > wolma > mimodd_fileinfo
view fileinfo.xml @ 3:05a3b55a7206 draft default tip
upgrade to v0.1.5.1
author | wolma |
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date | Fri, 16 Jan 2015 11:13:49 -0500 |
parents | 43d52bf6cd3f |
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<tool id="fileinfo" name="Retrieve File Information"> <description>for supported data formats.</description> <requirements> <requirement type="package" version="0.1.5">mimodd</requirement> </requirements> <version_command>mimodd version -q</version_command> <command> mimodd info $ifile -o $outputfile --verbose --oformat $oformat </command> <inputs> <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" /> <param name="oformat" type="select" label="output format"> <option value="txt">text</option> <option value="html">html</option> </param> </inputs> <outputs> <data name="outputfile" format="txt" label="Sample Info on ${on_string}"> <change_format> <when input="oformat" value="html" format="html"/> </change_format> </data> </outputs> <help> .. class:: infomark **What it does** The tool inspects the input file and generates a report summarizing its contents. It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them. </help> </tool>