annotate snpeff_genomes.xml @ 2:9c5c2d4cf379 draft

planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312

<tool id="mimodd_snpeff_genomes" name="List Installed SnpEff Genomes" version="@MIMODD_WRAPPER_VERSION@">
    <description>
    available for variant annotation with MiModD
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command><![CDATA[
  	mimodd snpeff-genomes -o '$outputfile'
    ]]></command>
    
    <inputs>
    </inputs>
    
    <outputs>
        <data name="outputfile" format="tabular" />
    </outputs>
    
    <help><![CDATA[
.. class:: infomark

**What it does**

When executed this tool searches the host machine's SnpEff installation for properly registered and installed
genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.

@HELP_FOOTER@
    ]]></help>
    <expand macro="citations" />
</tool>