Mercurial > repos > wolma > mimodd_snpeff_genomes
changeset 0:dba25dfccb43 draft
Imported from capsule None
| author | wolma |
|---|---|
| date | Sat, 13 Dec 2014 17:19:36 -0500 |
| parents | |
| children | 55299179eb47 |
| files | snpeff_genomes.xml tool_dependencies.xml |
| diffstat | 2 files changed, 29 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snpeff_genomes.xml Sat Dec 13 17:19:36 2014 -0500 @@ -0,0 +1,23 @@ +<tool id="snpeff_genomes" name="List Installed SnpEff Genomes"> + <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description> + <requirements> + <requirement type="package" version="0.1.5">mimodd</requirement> + </requirements> + <version_command>mimodd version -q</version_command> + <command> + mimodd snpeff-genomes -o $outputfile + </command> + <outputs> + <data name="outputfile" format="tabular" /> + </outputs> +<help> +.. class:: infomark + +**What it does** + +When executed this tool searches the host machine's SnpEff installation for properly registered and installed +genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool. + +</help> + +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Dec 13 17:19:36 2014 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="mimodd" version="0.1.5"> + <repository name="package_mimodd_0_1_5" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>