Mercurial > repos > wolma > package_python_3_4_x_lean
changeset 3:87b8dcebce9b draft
Uploaded
| author | wolma |
|---|---|
| date | Fri, 29 Apr 2016 04:20:06 -0400 |
| parents | 50ffd429060b |
| children | 5e5653b689ca |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 43 insertions(+), 43 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Apr 26 12:24:47 2016 -0400 +++ b/tool_dependencies.xml Fri Apr 29 04:20:06 2016 -0400 @@ -5,25 +5,24 @@ </package> <package name="sqlite" version="3.8.3"> - <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="python3" version="3.4"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://www.python.org/ftp/python/3.4.4/Python-3.4.4.tgz</action> - - <action type="set_environment_for_install"> - <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="zlib" version="1.2.8" /> - </repository> - - <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> - <package name="sqlite" version="3.8.3" /> - </repository> - </action> - - <action type="shell_command"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://www.python.org/ftp/python/3.4.4/Python-3.4.4.tgz</action> + + <action type="set_environment_for_install"> + <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="zlib" version="1.2.8" /> + </repository> + <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="sqlite" version="3.8.3" /> + </repository> + </action> + + <action type="shell_command"> # The python build system doesn't check CPATH / C(PLUS)_INCLUDE_PATH which is set by the depended-upon # tool definitions for these sources, but it does check CPPFLAGS / LDFLAGS # Currently not whitespace-safe, I haven't found a way yet to quote the *FLAGS values so that they are @@ -47,24 +46,24 @@ unset PYTHONPATH unset PYTHONHOME - ./configure --prefix="$INSTALL_DIR" \ + ./configure --prefix="$INSTALL_DIR" --without-ensurepip \ && make \ && make install - </action> - - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable> - <!-- clear PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path. --> - <environment_variable action="set_to" name="PYTHONPATH" /> - <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> - <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> - <!-- fix too strict compiler settings under Python 3.4 --> - <environment_variable action="set_to" name="CFLAGS">"$ENV[CFLAGS] -Wno-error=declaration-after-statement"</environment_variable> - </action> - </actions> - </install> - <readme> + </action> + + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ZLIB_ROOT_PATH]/lib</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[SQLITE_ROOT_DIR]/lib</environment_variable> + <!-- clear PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path. --> + <environment_variable action="set_to" name="PYTHONPATH" /> + <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> + </action> + </actions> + </install> + + <readme> The Python programming language version 3.4 http://www.python.org @@ -74,9 +73,9 @@ This package receives bug fixes within the 3.4 release series! - It contains the zlib and sqlite3 modules as the only stdlib modules with - external dependencies (handled in here by depending on package_zlib_1_2_8 - and package_sqlite_3_8_3). + Currently, it contains the zlib and sqlite3 modules as the only stdlib + modules with external dependencies (handled in here by depending on + package_zlib_1_2_8 and package_sqlite_3_8_3). In particular, this build does not compile Python's ssl module (which would cause dependency on openssl and, in turn, on Perl). @@ -84,16 +83,16 @@ This means that **the pip installation tool will not be available with this build** !! - For a full build (including the ssl module) look at - https://toolshed.g2.bx.psu.edu/view/jankanis/package_python3_4 - written by jankanis, of which this package is a shameless plagiarism. + For a full build (including the ssl module) look at + https://toolshed.g2.bx.psu.edu/view/iuc/package_python_3_4/ + issued by the IUC. This version of Python includes a built-in virtual environment manager. To create a Python 3 virtual env, include the following actions in your tool_dependencies.xml, e.g. for a package MY_TOOL_venv: <action type="set_environment_for_install"> - <repository name="package_python3_zlib_dependent_1_0" owner="wolma"> + <repository name="package_python_3_4_x_lean" owner="wolma"> <package name="python3" version="3.4" /> </repository> <!-- other install time dependencies --> @@ -105,7 +104,9 @@ # pip cannot be used for installation because it depends on ssl, # which this build does not provide - pyvenv --without-pip $INSTALL_DIR/MY_TOOL_venv + python3 -m venv --without-pip $INSTALL_DIR/MY_TOOL_venv + + # optional: install setuptools if required # install python packages # assuming you are in the download directory of the package @@ -113,10 +114,9 @@ $INSTALL_DIR/MY_TOOL_venv/bin/python3 setup.py install </action> - For an example of how this could used by a package look at the - tool_dependencies file of: + For a full example look at the tool_dependencies file of: - https://toolshed.g2.bx.psu.edu/view/wolma/mimodd + https://toolshed.g2.bx.psu.edu/view/wolma/mimodd </readme> </package>