annotate physiofit_manager.xml @ 1:e148194ff76c draft default tip

planemo upload for repository https://github.com/MetaboHUB-MetaToul-FluxoMet/PhysioFit_Data_Manager commit b3c2ed8201484706bc206cb165916d457fb0a428

<tool id='physiofit_data_manager' name='PhysioFit data connector' profile='21.09' version='@TOOL_VERSION@+galaxy1'>
    <description>Managing inputs for PhysioFit</description>
    <macros>
        <token name="@TOOL_VERSION@">1.0.1</token>
    </macros>
    <requirements>
        <requirement type='package' version='@TOOL_VERSION@'>physiofit_data_manager</requirement>
    </requirements>
    <command detect_errors='exit_code'><![CDATA[

        physiofit_manager
        -b '$biomass_file'
        -c '$concentrations_file'
        -e '$physiofit_input'

    ]]></command>
    <inputs>
        <param name='biomass_file' type='data' format='tabular,txt' multiple='true' label='File containing the time-course measurements of biomass concentrations' />
        <param name='concentrations_file' type='data' format='tabular,txt' multiple='true' label='File containing the time-course measurements of the different metabolite concentrations' />
    </inputs>

    <outputs>
        <data name='physiofit_input' format='tabular' label='PhysioFit Input File' />
    </outputs>

    <tests>
        <test>
            <param name='biomass_file' value='biomass.tsv' />
            <param name='concentrations_file' value='concentrations.tsv' />
            <output name='physiofit_input' value='output.tsv' />
        </test>
    </tests>

    <help><![CDATA[
.. class:: warningmark

Tool to handle physiofit input files

    ]]></help>
    <citations>
        <citation type='bibtex'>
    @misc{githubphysiofit,
      author = {Le Gregam, Loic},
      year = {2022},
      title = {PhysioFit_Data_Manager},
    }</citation>
        </citations>
</tool>