Mercurial > repos > workflow4metabolomics > physiofit_manager
changeset 0:51a4b901f350 draft
planemo upload commit ea1ea6d651e2198be296c8f71270b693c762396c
author | workflow4metabolomics |
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date | Tue, 22 Nov 2022 15:12:06 +0000 |
parents | |
children | e148194ff76c |
files | physiofit_manager.xml test-data/biomass.tsv test-data/concentrations.tsv test-data/output.tsv |
diffstat | 4 files changed, 68 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/physiofit_manager.xml Tue Nov 22 15:12:06 2022 +0000 @@ -0,0 +1,48 @@ +<tool id='physiofit_data_manager' name='PhysioFit Manager' profile='21.09' version='@TOOL_VERSION@+galaxy0'> + <description>Managing inputs for PhysioFit</description> + <macros> + <token name="@TOOL_VERSION@">1.0.1</token> + </macros> + <requirements> + <requirement type='package' version='@TOOL_VERSION@'>physiofit_data_manager</requirement> + </requirements> + <command detect_errors='exit_code'><![CDATA[ + + physiofit_manager + -b '$biomass_file' + -c '$concentrations_file' + -e '$physiofit_input' + + ]]></command> + <inputs> + <param name='biomass_file' type='data' format='tabular,txt' multiple='true' label='File containing the time-course measurements of biomass concentrations' /> + <param name='concentrations_file' type='data' format='tabular,txt' multiple='true' label='File containing the time-course measurements of the different metabolite concentrations' /> + </inputs> + + <outputs> + <data name='physiofit_input' format='tabular' label='PhysioFit Input File' /> + </outputs> + + <tests> + <test> + <param name='biomass_file' value='biomass.tsv' /> + <param name='concentrations_file' value='concentrations.tsv' /> + <output name='physiofit_input' value='output.tsv' /> + </test> + </tests> + + <help><![CDATA[ +.. class:: warningmark + +Tool to handle physiofit input files + + ]]></help> + <citations> + <citation type='bibtex'> + @misc{githubphysiofit, + author = {Le Gregam, Loic}, + year = {2022}, + title = {PhysioFit_Data_Manager}, + }</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/biomass.tsv Tue Nov 22 15:12:06 2022 +0000 @@ -0,0 +1,6 @@ +time X +1 0.5 +2 0.8 +3 1.2 +4 1.8 +5 1.9