Mercurial > repos > xuebing > bed_window

changeset 0:21b4cb068fab

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Uploaded
author xuebing
date Sat, 31 Mar 2012 14:05:34 -0400
parents
children 0f849231e4e0
files bed_window.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bed_window.xml	Sat Mar 31 14:05:34 2012 -0400
@@ -0,0 +1,18 @@
+<tool id="bed_window" name="bed_window">
+  <description>make a window around interval center </description>
+  <command interpreter="python"> bed_window.py $input $output $window </command>
+  <inputs>
+     <param name="input" type="data" format="interval" label="Input interval file"/>
+     <param name="window" type="integer" value="1000" label="window size (bps)" />
+  </inputs>
+  <outputs>
+    <data format="input" name="output" />
+  </outputs>
+  <help>
+
+**Description**
+
+For each interval in the input file, take the middle point, then extend each side windowsize/2 bps. 
+
+  </help>
+</tool>