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1 <tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0">
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2 <!-- produces png file -->
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3 <description>Plot quality of conservation of a sequence alignment</description>
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4 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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5 <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command>
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6 <inputs>
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7 <param format="data" name="input1" type="data">
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8 <label>Sequence</label>
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9 </param>
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10 <param name="winsize" size="10" type="text" value="4">
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11 <label>Number of columns to average alignment quality over</label>
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12 </param>
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13 </inputs>
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14 <outputs>
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15 <data format="png" name="out_file1" />
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16 </outputs>
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17 <help>
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18 You can view the original documentation here_.
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19
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20 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html
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21 </help>
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22 </tool> |