|
0
|
1 <tool id="Condense characters1" name="Condense">
|
|
|
2 <description>consecutive characters</description>
|
|
|
3 <command interpreter="perl">condense_characters.pl $input $character $out_file1</command>
|
|
|
4 <inputs>
|
|
|
5 <!-- <display>condense all consecutive $character from $input</display> -->
|
|
|
6 <param name="character" type="select" label="Condense all consecutive">
|
|
|
7 <option value="T">Tabs</option>
|
|
|
8 <option value="Sp">Spaces</option>
|
|
|
9 <option value="Dt">Dots</option>
|
|
|
10 <option value="C">Commas</option>
|
|
|
11 <option value="D">Dashes</option>
|
|
|
12 <option value="U">Underscores</option>
|
|
|
13 <option value="P">Pipes</option>
|
|
|
14 </param>
|
|
|
15 <param format="txt" name="input" type="data" label="in this Query"/>
|
|
|
16 </inputs>
|
|
|
17 <outputs>
|
|
|
18 <data format="input" name="out_file1" metadata_source="input" />
|
|
|
19 </outputs>
|
|
|
20 <tests>
|
|
|
21 <test>
|
|
|
22 <param name="character" value="T"/>
|
|
|
23 <param name="input" value="1.bed"/>
|
|
|
24 <output name="out_file1" file="eq-condense.dat"/>
|
|
|
25 </test>
|
|
|
26 </tests>
|
|
|
27 <help>
|
|
|
28
|
|
|
29 **What it does**
|
|
|
30
|
|
|
31 This tool condenses all consecutive characters of a specified type.
|
|
|
32
|
|
|
33 -----
|
|
|
34
|
|
|
35 **Example**
|
|
|
36
|
|
|
37 - Input file::
|
|
|
38
|
|
|
39 geneX,,,10,,,,,20
|
|
|
40 geneY,,5,,,,,12,15,9,
|
|
|
41
|
|
|
42 - Condense all consecutive commas. The above file will be converted into::
|
|
|
43
|
|
|
44 geneX,10,20
|
|
|
45 geneY,5,12,15,9
|
|
|
46
|
|
|
47 </help>
|
|
|
48 </tool>
|
