Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_freak.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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-1:000000000000 | 0:9071e359b9a3 |
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1 <tool id="EMBOSS: freak36" name="freak" version="5.0.0"> | |
2 <description>Residue/base frequency table or plot</description> | |
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
4 <command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command> | |
5 <inputs> | |
6 <param format="data" name="input1" type="data"> | |
7 <label>Sequences</label> | |
8 </param> | |
9 <param name="letters" size="5" type="text" value="gc"> | |
10 <label>Residue letters</label> | |
11 </param> | |
12 <param name="step" size="5" type="text" value="1"> | |
13 <label>Stepping value</label> | |
14 </param> | |
15 <param name="window" size="5" type="text" value="30"> | |
16 <label>Averaging window</label> | |
17 </param> | |
18 </inputs> | |
19 <outputs> | |
20 <data format="freak" name="out_file1" /> | |
21 </outputs> | |
22 <tests> | |
23 <test> | |
24 <param name="input1" value="2.fasta"/> | |
25 <param name="letters" value="gc"/> | |
26 <param name="step" value="1"/> | |
27 <param name="window" value="30"/> | |
28 <output name="out_file1" file="emboss_freak_out.freak"/> | |
29 </test> | |
30 </tests> | |
31 <help> | |
32 You can view the original documentation here_. | |
33 | |
34 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html | |
35 </help> | |
36 </tool> |