diff tools/emboss_5/emboss_freak.xml @ 0:9071e359b9a3

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_freak.xml	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,36 @@
+<tool id="EMBOSS: freak36" name="freak" version="5.0.0">
+  <description>Residue/base frequency table or plot</description>
+  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
+  <command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command>
+  <inputs>
+    <param format="data" name="input1" type="data">
+      <label>Sequences</label>
+    </param>
+    <param name="letters" size="5" type="text" value="gc">
+      <label>Residue letters</label>
+    </param>
+    <param name="step" size="5" type="text" value="1">
+      <label>Stepping value</label>
+    </param>
+    <param name="window" size="5" type="text" value="30">
+      <label>Averaging window</label>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="freak" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <param name="letters" value="gc"/>
+      <param name="step" value="1"/>
+      <param name="window" value="30"/>
+      <output name="out_file1" file="emboss_freak_out.freak"/>
+    </test>
+  </tests>
+  <help>
+    You can view the original documentation here_.
+    
+    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html
+  </help>
+</tool>
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