annotate LICENSE @ 2:ae0b24f726c3 draft default tip

planemo upload for repository https://github.com/goeckslab/multi_fasta_glimmerhmm.git commit 33f2156452e82c882d7cc6a1a69c3c6884eab94a

Academic Free License (“AFL”) v. 3.0

This Academic Free License (the "License") applies to any original work of
authorship (the "Original Work") whose owner (the "Licensor") has placed the
following licensing notice adjacent to the copyright notice for the Original
Work:

     Licensed under the Academic Free License version 3.0

1) Grant of Copyright License. Licensor grants You a worldwide, royalty-free,
non-exclusive, sublicensable license, for the duration of the copyright, to do
the following:

     a) to reproduce the Original Work in copies, either alone or as part of a
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     b) to translate, adapt, alter, transform, modify, or arrange the Original
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     c) to distribute or communicate copies of the Original Work and
     Derivative Works to the public, under any license of your choice that
     does not contradict the terms and conditions, including Licensor’s
     reserved rights and remedies, in this Academic Free License;
     d) to perform the Original Work publicly; and
     e) to display the Original Work publicly.

2) Grant of Patent License. Licensor grants You a worldwide, royalty-free,
non-exclusive, sublicensable license, under patent claims owned or controlled
by the Licensor that are embodied in the Original Work as furnished by the
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have made, and import the Original Work and Derivative Works.

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documentation describing how to modify the Original Work. Licensor agrees to
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of any contributors to the Original Work, nor any of their trademarks or
service marks, may be used to endorse or promote products derived from this
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for sale, have made, or import embodiments of any patent claims other than the
licensed claims defined in Section 2. No license is granted to the trademarks
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5) External Deployment. The term "External Deployment" means the use,
distribution, or communication of the Original Work or Derivative Works in any
way such that the Original Work or Derivative Works may be used by anyone
other than You, whether those works are distributed or communicated to those
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As an express condition for the grants of license hereunder, You must treat
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6) Attribution Rights. You must retain, in the Source Code of any Derivative
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Source Code of the Original Work, as well as any notices of licensing and any
descriptive text identified therein as an "Attribution Notice." You must cause
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the copyright in and to the Original Work and the patent rights granted herein
by Licensor are owned by the Licensor or are sublicensed to You under the
terms of this License with the permission of the contributor(s) of those
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IS" BASIS and WITHOUT WARRANTY, either express or implied, including, without
limitation, the warranties of non-infringement, merchantability or fitness for
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IS WITH YOU. This DISCLAIMER OF WARRANTY constitutes an essential part of this
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whether in tort (including negligence), contract, or otherwise, shall the
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consequential damages of any character arising as a result of this License or
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of goodwill, work stoppage, computer failure or malfunction, or any and all
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9) Acceptance and Termination. If, at any time, You expressly assented to this
License, that assent indicates your clear and irrevocable acceptance of this
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copies of the Original Work or a Derivative Work, You must make a reasonable
effort under the circumstances to obtain the express assent of recipients to
the terms of this License. This License conditions your rights to undertake
the activities listed in Section 1, including your right to create Derivative
Works based upon the Original Work, and doing so without honoring these terms
and conditions is prohibited by copyright law and international treaty.
Nothing in this License is intended to affect copyright exceptions and
limitations (including “fair use” or “fair dealing”). This License shall
terminate immediately and You may no longer exercise any of the rights granted
to You by this License upon your failure to honor the conditions in Section
1(c).

10) Termination for Patent Action. This License shall terminate automatically
and You may no longer exercise any of the rights granted to You by this
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counterclaim, against Licensor or any licensee alleging that the Original Work
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alleging patent infringement by combinations of the Original Work with other
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11) Jurisdiction, Venue and Governing Law. Any action or suit relating to this
License may be brought only in the courts of a jurisdiction wherein the
Licensor resides or in which Licensor conducts its primary business, and under
the laws of that jurisdiction excluding its conflict-of-law provisions. The
application of the United Nations Convention on Contracts for the
International Sale of Goods is expressly excluded. Any use of the Original
Work outside the scope of this License or after its termination shall be
subject to the requirements and penalties of copyright or patent law in the
appropriate jurisdiction. This section shall survive the termination of this
License.

12) Attorneys’ Fees. In any action to enforce the terms of this License or
seeking damages relating thereto, the prevailing party shall be entitled to
recover its costs and expenses, including, without limitation, reasonable
attorneys' fees and costs incurred in connection with such action, including
any appeal of such action. This section shall survive the termination of this
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13) Miscellaneous. If any provision of this License is held to be
unenforceable, such provision shall be reformed only to the extent necessary
to make it enforceable.

14) Definition of "You" in This License. "You" throughout this License,
whether in upper or lower case, means an individual or a legal entity
exercising rights under, and complying with all of the terms of, this License.
For legal entities, "You" includes any entity that controls, is controlled by,
or is under common control with you. For purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the direction or
management of such entity, whether by contract or otherwise, or (ii) ownership
of fifty percent (50%) or more of the outstanding shares, or (iii) beneficial
ownership of such entity.

15) Right to Use. You may use the Original Work in all ways not otherwise
restricted or conditioned by this License or by law, and Licensor promises not
to interfere with or be responsible for such uses by You.

16) Modification of This License. This License is Copyright © 2005 Lawrence
Rosen. Permission is granted to copy, distribute, or communicate this License
without modification. Nothing in this License permits You to modify this
License as applied to the Original Work or to Derivative Works. However, You
may modify the text of this License and copy, distribute or communicate your
modified version (the "Modified License") and apply it to other original works
of authorship subject to the following conditions: (i) You may not indicate in
any way that your Modified License is the "Academic Free License" or "AFL" and
you may not use those names in the name of your Modified License; (ii) You
must replace the notice specified in the first paragraph above with the notice
"Licensed under <insert your license name here>" or with a notice of your own
that is not confusingly similar to the notice in this License; and (iii) You
may not claim that your original works are open source software unless your
Modified License has been approved by Open Source Initiative (OSI) and You
comply with its license review and certification process.