annotate tool_dependencies.xml @ 0:39d26518c84b draft default tip

planemo upload commit d630dda5f5480884c7b4f349704e8f68a6f726aa

<?xml version="1.0" ?>
<tool_dependency>
    <package name="ucsc_rename_bigwig" version="340">
        <install version="1.0">
            <actions_group>
                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url"
                            sha256sum="f7d88e5a4d4a99f1489ae64ea35031593f10b80d58efbac7f29e372dbc827f45">
                        http://old-gep.wustl.edu/~galaxy/packages/ucsc_rename_bigwig_340_macOS_x86_64.tar.gz
                    </action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url"
                            sha256sum="cadb724cbfebda2ec3a43519f7cb5eec97842ba6f271f6ad78af580bc3f9cd9a">
                        http://old-gep.wustl.edu/~galaxy/packages/ucsc_rename_bigwig_340_linux_x86_64.tar.gz
                    </action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <!-- Display error message for unsupported OS and CPU architecture -->
                <actions>
                    <action type="shell_command">
                        echo "ERROR: This package only supports 64-bit systems running macOS or Linux"
                    </action>
                    <action type="shell_command">false</action>
                </actions>

                <!-- update $PATH environment variable -->
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
        <![CDATA[
            This package contains the utilities for renaming bigWig files
            `bigWig files <https://genome.ucsc.edu/goldenpath/help/bigWig.html>`_.
            The utilities were created by the
            `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_
            at the UCSC Genomics Institute.

            The bigWig file format is designed to store dense continuous datasets
            and it is compatible with many genome browsers (e.g., UCSC Genome Browser,
            JBrowse, IGV).
        ]]>
        </readme>
    </package>
</tool_dependency>