comparison trfBig.xml @ 0:ba819b65bef3 draft default tip

planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
author yating-l
date Mon, 01 May 2017 17:34:42 -0400
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-1:000000000000 0:ba819b65bef3
1 <tool id="trfBig" name="TrfBig" version="0.1.0">
2 <description>trfBig - Mask tandem repeats on a big sequence file</description>
3 <requirements>
4 <requirement type="package" version="4.07b">trf</requirement>
5 <!--<requirement type="package" version="324">ucsc-trfbig</requirement>-->
6 <requirement type="package" version="1.0">trfBig</requirement>
7 </requirements>
8 <stdio>
9 <exit_code range="1:" />
10 </stdio>
11 <command>
12 trfBig -bedAt=$output $input /dev/null
13 </command>
14 <inputs>
15 <param format="fasta" name="input" type="data" />
16 </inputs>
17 <outputs>
18 <data format="bed" name="output" />
19 </outputs>
20 <help>
21 This will repeatedly run trf to mask tandem repeats in infile
22 and put masked results in outFile. inFile and outFile can be .fa
23 or .nib format. Outfile can be .bed as well. Sequence output is hard
24 masked, lowercase.
25 </help>
26 </tool>