Mercurial > repos > yating-l > ucsc_pslcheck

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author yating-l
date Wed, 16 May 2018 18:37:23 -0400
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Galaxy wrapper for UCSC pslCheck tool (version: v340)
==========================================================
validate PSL files

usage:
-------

   $ pslCheck fileTbl(s)

options:
   
   -pass=pslFile - write PSLs without errors to this file

   -targetSizes=sizesFile - tab file with columns of target and size.

    If specified, psl is check to have a valid target and target
    coordinates.

   -querySizes=sizesFile - file with query sizes.

Source code:
-------------

http://hgdownload.cse.ucsc.edu/admin/exe/

Licence
-------
Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).