Mercurial > repos > yguitton > metams_rungc
comparison README.rst @ 4:c10824185547 draft
planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit 174a1713024f246c1485cbd75218577e89353522
| author | workflow4metabolomics |
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| date | Wed, 03 Jul 2019 05:14:32 -0400 |
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| 1 ==================================== | |
| 2 GC-MS data processing version 3.0.0 | |
| 3 ==================================== | |
| 4 | |
| 5 1) Date : 2019-05-20 | |
| 6 | |
| 7 2) Author and maintainer : | |
| 8 | |
| 9 Yann GUITTON | |
| 10 | |
| 11 LABERCA - PFCA Metabolomics Platform | |
| 12 | |
| 13 E-mail: yann.guitton@oniris-nantes.fr / yann.guitton@gmail.com | |
| 14 | |
| 15 3) Funding : | |
| 16 | |
| 17 Developed within IDEALG project (http://www.idealg.ueb.eu/versionAnglaise/) | |
| 18 | |
| 19 Developed within IFB-MetaboHub W4M project | |
| 20 | |
| 21 4) Usage restrictions : | |
| 22 | |
| 23 Use of this tool is restricted to the service conditions of the MetaboHUB-IFB infrastructures. | |
| 24 For any question regarding the use of these services, please contact: yann.guitton@oniris-nantes.fr | |
| 25 | |
| 26 5) Installation : | |
| 27 | |
| 28 4 files are required for installation : | |
| 29 | |
| 30 - 'README.rst' | |
| 31 Instructions for installation | |
| 32 | |
| 33 - 'metaMS_runGC.xml' | |
| 34 Configuration file; to be put into the './galaxy-dist/tools/' directory | |
| 35 and 2.png files for illustration | |
| 36 | |
| 37 - 'metaMS_runGC.r' | |
| 38 Wrapper code written in R aimed at launching the runGC function from the metaMS package given the arguments entered by the user through the Galaxy interface | |
| 39 | |
| 40 - 'metaMS R package ' | |
| 41 The 'metaMS' package requires dependencies and can be installed with source("http://bioconductor.org/biocLite.R") or `biocLite("metaMS")` | |
| 42 | |
| 43 This code is for installation of the Galaxy module on the Workflow4metabolomics.org MetaboHUB-IFB platform only and must not be distributed without the author agreement | |
| 44 | |
| 45 | |
| 46 Changelog/News | |
| 47 -------------- | |
| 48 **Version 3.0 - 20/05/2019** | |
| 49 | |
| 50 - Divided tool into two new. One will be metaMS_plot and this one stay the same without plotting chromatograms and without zip files | |
| 51 | |
| 52 **Version 2.0 - 15/05/2017** | |
| 53 | |
| 54 - RI option, better usage of ri filter and easier file reading for RI database | |
| 55 | |
| 56 **Version 1.1 - 11/07/2016** | |
| 57 | |
| 58 - TEST: refactoring to pass planemo test using conda dependencies | |
| 59 | |
| 60 **Version 1.0 - 01/06/2015** | |
| 61 | |
| 62 - NEW: new tool | |
| 63 | |
| 64 Test Status | |
| 65 ----------- | |
| 66 | |
| 67 Planemo test using conda: passed |