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planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit 174a1713024f246c1485cbd75218577e89353522
author workflow4metabolomics
date Wed, 03 Jul 2019 05:14:32 -0400
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c10824185547 planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit 174a1713024f246c1485cbd75218577e89353522
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1 ====================================
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2 GC-MS data processing version 3.0.0
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3 ====================================
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c10824185547 planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit 174a1713024f246c1485cbd75218577e89353522
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5 1) Date : 2019-05-20
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7 2) Author and maintainer :
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9 Yann GUITTON
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11 LABERCA - PFCA Metabolomics Platform
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13 E-mail: yann.guitton@oniris-nantes.fr / yann.guitton@gmail.com
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c10824185547 planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit 174a1713024f246c1485cbd75218577e89353522
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15 3) Funding :
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17 Developed within IDEALG project (http://www.idealg.ueb.eu/versionAnglaise/)
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19 Developed within IFB-MetaboHub W4M project
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21 4) Usage restrictions :
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23 Use of this tool is restricted to the service conditions of the MetaboHUB-IFB infrastructures.
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24 For any question regarding the use of these services, please contact: yann.guitton@oniris-nantes.fr
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26 5) Installation :
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28 4 files are required for installation :
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30 - 'README.rst'
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31 Instructions for installation
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33 - 'metaMS_runGC.xml'
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34 Configuration file; to be put into the './galaxy-dist/tools/' directory
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35 and 2.png files for illustration
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37 - 'metaMS_runGC.r'
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38 Wrapper code written in R aimed at launching the runGC function from the metaMS package given the arguments entered by the user through the Galaxy interface
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40 - 'metaMS R package '
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41 The 'metaMS' package requires dependencies and can be installed with source("http://bioconductor.org/biocLite.R") or `biocLite("metaMS")`
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43 This code is for installation of the Galaxy module on the Workflow4metabolomics.org MetaboHUB-IFB platform only and must not be distributed without the author agreement
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46 Changelog/News
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47 --------------
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48 **Version 3.0 - 20/05/2019**
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50 - Divided tool into two new. One will be metaMS_plot and this one stay the same without plotting chromatograms and without zip files
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52 **Version 2.0 - 15/05/2017**
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54 - RI option, better usage of ri filter and easier file reading for RI database
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56 **Version 1.1 - 11/07/2016**
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58 - TEST: refactoring to pass planemo test using conda dependencies
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60 **Version 1.0 - 01/06/2015**
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62 - NEW: new tool
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64 Test Status
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65 -----------
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67 Planemo test using conda: passed