annotate tool_dependencies.xml @ 4:5d38abf7e4b6 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit e42aebc7a9b64744919668cb9a856b5df8a61387

<?xml version="1.0"?>
<tool_dependency>
    <package name="edger" version="3.11.0">
        <repository changeset_revision="8b2965eeb34e" name="package_r_edger_3_11_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="design_matrix_creator" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/design_matrix_creator $INSTALL_DIR/bin/design_matrix_creator</action>
                <action type="chmod">
                    <file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
    
    <package name="edger_dge_table_to_bedgraph" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/edger_dge_table_to_bedgraph</action>
                <action type="chmod">
                    <file mode="755">$INSTALL_DIR/bin/edger_dge_table_to_bedgraph</file>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>