comparison README.rst @ 5:bde663b872d9 draft

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EdgeR wrapper for Galaxy
========================

http://www.bioconductor.org/packages/release/bioc/html/edgeR.html

Implementation of EdgeR supporting quite advanced experimental
designs.

GPL (>=2)

**This wrapper**:

    Copyright (C) 2013-2015  Youri Hoogstrate

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.

5:bde663b872d9

EdgeR wrapper for Galaxy
========================

This is a wrapper for the RNA-Seq differentially gene expression analysis tool EdgeR.
This wrapper contains 2 flavours of tests, a classical 2 group analysis and a more
sophistiacted multi-factor analysis.

Input data can be generated using so called count tools. The wrapper has been written
to be compatible with at least featureCounts (by yhoogstrate) and HTSeq-count (by iuc).

http://www.bioconductor.org/packages/release/bioc/html/edgeR.html

Implementation of EdgeR supporting quite advanced experimental
designs.

GPL (>=2)

**This wrapper**:

GPL (>=2)