annotate README.rst @ 5:bde663b872d9 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 275a72ec0424e4e5d658d1bc8227077ea46f0fdc

EdgeR wrapper for Galaxy
========================

This is a wrapper for the RNA-Seq differentially gene expression analysis tool EdgeR.
This wrapper contains 2 flavours of tests, a classical 2 group analysis and a more
sophistiacted multi-factor analysis.

Input data can be generated using so called count tools. The wrapper has been written
to be compatible with at least featureCounts (by yhoogstrate) and HTSeq-count (by iuc).

http://www.bioconductor.org/packages/release/bioc/html/edgeR.html

Implementation of EdgeR supporting quite advanced experimental
designs.

Development
-----------

* Repository-Maintainer: Youri Hoogstrate

* Repository-Development: https://github.com/ErasmusMC-Bioinformatics/edger_galaxy_wrapper

The tool wrapper has been written by Youri Hoogstrate from the Erasmus
Medical Center (Rotterdam, Netherlands) on behalf of the Translational
Research IT (TraIT) project:

http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch

More tools by the Translational Research IT (TraIT) project can be found in the following toolsheds:

http://toolshed.g2.bx.psu.edu

http://testtoolshed.g2.bx.psu.edu/

License
-------

**R**:

GPL (>=2): http://www.r-project.org/COPYING

**BioConductor**:

Artistic License 2.0: http://www.bioconductor.org/about/

**EdgeR**:

GPL (>=2)

**This wrapper**:

GPL (>=2)