Mercurial > repos > yhoogstrate > featurecounts
diff tool_dependencies.xml @ 2:b5c93611d2c5 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
| author | yhoogstrate |
|---|---|
| date | Thu, 10 Sep 2015 05:11:49 -0400 |
| parents | 63bd455ed299 |
| children | e04fbcc4e91a |
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--- a/tool_dependencies.xml Mon Jun 01 07:18:31 2015 -0400 +++ b/tool_dependencies.xml Thu Sep 10 05:11:49 2015 -0400 @@ -1,21 +1,24 @@ <?xml version="1.0"?> <tool_dependency> - <package name="featurecounts" version="1.4.6.p1"> - <repository changeset_revision="a4c247fdd71b" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - - <package name="featurecounts2bed" version="1.0.0"> - <install version="1.0"> - <actions> - <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/</action> - <action type="chmod"> - <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file> - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - </package> + <package name="featurecounts" version="1.4.6.p1"> + <repository changeset_revision="42796f06052f" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="featurecounts2bed" version="1.0.0"> + <install version="1.0"> + <actions> + <action type="shell_command"> + mkdir $INSTALL_DIR/bin && + cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/ + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + </package> </tool_dependency>