Mercurial > repos > yhoogstrate > featurecounts

annotate tool_dependencies.xml @ 2:b5c93611d2c5 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
author yhoogstrate
date Thu, 10 Sep 2015 05:11:49 -0400
parents 63bd455ed299
children e04fbcc4e91a
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ab0323782bb5 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit cc900436bad9c6cca1f73d438c1f158d3bfc4318-dirty
yhoogstrate
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1 <?xml version="1.0"?>
ab0323782bb5 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit cc900436bad9c6cca1f73d438c1f158d3bfc4318-dirty
yhoogstrate
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2 <tool_dependency>
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b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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3 <package name="featurecounts" version="1.4.6.p1">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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4 <repository changeset_revision="42796f06052f" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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5 </package>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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6
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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7 <package name="featurecounts2bed" version="1.0.0">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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8 <install version="1.0">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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9 <actions>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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10 <action type="shell_command">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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11 mkdir $INSTALL_DIR/bin &amp;&amp;
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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12 cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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13 </action>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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14 <action type="chmod">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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15 <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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16 </action>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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17 <action type="set_environment">
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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19 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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20 </action>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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21 </actions>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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22 </install>
b5c93611d2c5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
parents: 1
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23 </package>
0
ab0323782bb5 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit cc900436bad9c6cca1f73d438c1f158d3bfc4318-dirty
yhoogstrate
parents:
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24 </tool_dependency>