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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
author yhoogstrate
date Thu, 10 Sep 2015 05:09:56 -0400
parents a4c247fdd71b
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a4c247fdd71b planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
yhoogstrate
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1 <?xml version="1.0"?>
a4c247fdd71b planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
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2 <tool_dependency>
1
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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3 <package name="featurecounts" version="1.4.6.p1">
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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4 <install version="1.0">
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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5 <actions>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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6 <action type="download_by_url"
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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7 sha256sum="48e0c516684c4771f965a0a3010fbc0ad55fb54cfd8f7090be3f55e7b5c09f36">http://sourceforge.net/projects/subread/files/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz/download</action>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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8 <action type="shell_command"><![CDATA[
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
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9 cd src/ &&
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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10 make -f Makefile.Linux
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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11 ]]></action>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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12 <action type="move_file">
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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13 <source>bin/featureCounts</source>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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14 <destination>$INSTALL_DIR/bin/</destination>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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15 </action>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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16 <action type="set_environment">
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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18 </action>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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19 </actions>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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20 </install>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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21 <readme>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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22 Downloads and installs featureCounts.
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
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23
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
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24 Prerequisites:
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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25 - wget
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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26 - gnu-autotools (make)
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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27 - tar
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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28 </readme>
42796f06052f planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
yhoogstrate
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29 </package>
0
a4c247fdd71b planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
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30 </tool_dependency>