comparison segmentation-fold.xml @ 4:63df1e23f4ff draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty

3:cd1bba1c66b3

<tool id="segmentation_fold" name="segmentation-fold" version="1.6.3-1">
    <description>RNA-Folding including predefined segments including K-turns</description>
    
    <requirements>
        <requirement type="package" version="1.6.3">segmentation-fold</requirement>
    </requirements>
    
    <stdio></stdio>
    
    <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command>
    
    <command><![CDATA[
        segmentation-fold
            
            #if $input.method == "fasta"

**Authors**

Youri Hoogstrate (yhoogstrate @ github)
    ]]></help>
    
    <citations>
        <citation type="bibtex">
           @mastersthesis{mastersthesis,
              author       = {Youri Hoogstrate}, 
              title        = {An algorithm for predicting RNA 2D structures including K-turns},
              school       = {University of Technology Delft, Leiden University},
              year         = 2012,
              address      = {},
              month        = 11,
              note         = {Research assignment for Master Computer-science},
              url          = { https://yh-kt-fold.googlecode.com/files/Report.pdf }
            }
        </citation>
    </citations>
</tool>

4:63df1e23f4ff

<tool id="segmentation_fold" name="segmentation-fold" version="@VERSION@-1">
    <description>RNA-Folding including predefined segments including K-turns</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    
    <requirements>
        <requirement type="package" version="1.6.5">segmentation-fold</requirement>
    </requirements>
    
    <expand macro="stdio" />
    
    <version_command>@VERSION_COMMAND_SMF@</version_command>
    
    <command><![CDATA[
        segmentation-fold
            
            #if $input.method == "fasta"

**Authors**

Youri Hoogstrate (yhoogstrate @ github)
    ]]></help>
    
    <expand macro="citations" />
</tool>