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comparison test-data/SNORD48-revised.scan-for-segments.txt @ 4:63df1e23f4ff draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty
author yhoogstrate
date Thu, 28 Jul 2016 10:25:37 -0400
parents 22d7b6019372
children 4d16cf9414cf
comparison
equal deleted inserted replaced
3:cd1bba1c66b3 4:63df1e23f4ff
1 >SNORD48 x Kt-42.dra 1 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
3 >SNORD48 x Kt-42.eco 3 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
5 >SNORD48 x Loop-E-Motif.bac 5 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
7 >SNORD48 x Kt-CD-box.UAU 7 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
9 >SNORD48 x Kt-CD-box.UGU 9 >SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
11 >SNORD48 x Kt-CD-box.CAU 11 >SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
13 >SNORD48 x Kt-42.tth 13 >SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
15 >SNORD48 x Kt-G2nA-SAM-riboswitch (T. tengcongensi) 15 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
17 >SNORD48 x Kt-7 G2nA SAM riboswitch (H. marismortui) 17 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
19 >SNORD48 x Kt-15.hma 19 >SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
21 >SNORD48 x Kt-U4b.hsa 21 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
23 >SNORD48 x Kt-CD-box.GGU 23 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
25 >SNORD48 x Kt-7 (E. coli) 25 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
27 >SNORD48 x Kt-7 (D. radiodurans) 27 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
29 >SNORD48 x Kt-58.hma 29 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
31 >SNORD48 x Kt-46.tth 31 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
33 >SNORD48 x Kt-SAM-ribo.tte 33 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
35 >SNORD48 x Kt-23.eco 35 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
37 >SNORD48 x Kt-38.hma 37 >SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
39 >SNORD48 x Kt-46.dra 39 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
41 >SNORD48 x Kt-CD-box.CGU 41 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
43 >SNORD48 x Kt-T-box.bsu 43 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
45 >SNORD48 x Kt-23.tth 45 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
47 >SNORD48 x Kt-46.eco 47 >SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
49 >SNORD48 x Kt-c-di-GMP-II.cac 49 >SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
51 >SNORD48 x Kt-11 (T. thermophilus) 51 >SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
53 >SNORD48 x Kt-CD-box.AAU 53 >SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
55 >SNORD48 x Kt-L30e.sce 55 >SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC 56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
57 >SNORD48 x Kt-7 (T. thermophilus)
58 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
59 >SNORD48 x Kt-42.hma
60 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
61 >SNORD48 x Kt-U4a.hsa
62 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
63 >SNORD48 x Kt-G2nA-SAMribo.bsu
64 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
65 >SNORD48 x Kt-CD-box.GAU
66 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
67 ((((((.((.((((((((((.....)))).).).)))).((((...))))...)).)))))).... (((((...(((((((...))).....))))).....(((((............))))))))).... -10.9206504822
68 >SNORD48 x Kt-11.eco
69 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
70 >SNORD48 x Kt-46.hma
71 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
72 >SNORD48 x Kt-CD-box.AGU
73 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
74 ((((((.((.((((((((((.....)))).).).)))).((((...))))...)).)))))).... ((...(((((..((..((((.....)))).))((((.((((((...))))..)).))))))))))) -1.84962844849