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diff test-data/SNORD48-revised.scan-for-segments.txt @ 4:63df1e23f4ff draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty
author yhoogstrate
date Thu, 28 Jul 2016 10:25:37 -0400
parents 22d7b6019372
children 4d16cf9414cf
line wrap: on
line diff
--- a/test-data/SNORD48-revised.scan-for-segments.txt	Thu Mar 31 04:26:12 2016 -0400
+++ b/test-data/SNORD48-revised.scan-for-segments.txt	Thu Jul 28 10:25:37 2016 -0400
@@ -1,74 +1,56 @@
->SNORD48 x Kt-42.dra
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Loop-E-Motif.bac
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.UAU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.UGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.CAU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 G2nA SAM riboswitch (H. marismortui)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-15.hma
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-U4b.hsa
+>SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.GGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (E. coli)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (D. radiodurans)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-58.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-SAM-ribo.tte
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-23.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-38.hma
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.dra
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.CGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-T-box.bsu
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-23.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-c-di-GMP-II.cac
+>SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-11 (T. thermophilus)
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.AAU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-L30e.sce
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-7 (T. thermophilus)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-42.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-U4a.hsa
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-G2nA-SAMribo.bsu
+>SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.GAU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
-((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	(((((...(((((((...))).....))))).....(((((............)))))))))....	-10.9206504822
->SNORD48 x Kt-11.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-46.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 x Kt-CD-box.AGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
-((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	((...(((((..((..((((.....)))).))((((.((((((...))))..)).)))))))))))	-1.84962844849