Mercurial > repos > yhoogstrate > segmentation_fold

comparison utils_find-boxes.xml @ 6:4d16cf9414cf draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
author erasmus-medical-center
date Fri, 24 Feb 2017 04:18:22 -0500
parents b7cf9b172cfe
children
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5:b7cf9b172cfe 6:4d16cf9414cf
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <requirements> 8 <expand macro="requirements" />
9 <requirement type="package" version="2.7.10">python</requirement> 9 <expand macro="version_command" />
10 <requirement type="package" version="1.9">numpy</requirement>
11 <requirement type="package" version="0.8.2.1">pysam</requirement>
12 <requirement type="package" version="0.6.1">htseq</requirement>
13 <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement>
14 </requirements>
15 10
16 <expand macro="stdio" /> 11 <command detect_errors="aggressive"><![CDATA[
17
18 <version_command>@VERSION_COMMAND_UTILS@</version_command>
19
20 <command><![CDATA[
21 segmentation-fold-utils 12 segmentation-fold-utils
22 find-boxes 13 find-boxes
23 --box1 '${box1}' 14 --box1 '${box1}'
24 --box2 '${box2}' 15 --box2 '${box2}'
25 $forward 16 $forward
70 label="${tool.name} on ${str($fasta_input.hid) + ': ' + $fasta_input.name}" /> 61 label="${tool.name} on ${str($fasta_input.hid) + ': ' + $fasta_input.name}" />
71 </outputs> 62 </outputs>
72 63
73 <tests> 64 <tests>
74 <test> 65 <test>
75 <param name="fasta_input" value="FindBoxes.genome.fa" format="fasta" /> 66 <param name="fasta_input" value="FindBoxes.genome.fa" ftype="fasta" />
76 <param name="box1" value="NRUGAUG" /> 67 <param name="box1" value="NRUGAUG" />
77 <param name="box2" value="CUGA" /> 68 <param name="box2" value="CUGA" />
78 <param name="forward" value="--forward" /> 69 <param name="forward" value="--forward" />
79 <param name="reverse" value="--reverse" /> 70 <param name="reverse" value="--reverse" />
80 71