Mercurial > repos > yhoogstrate > segmentation_fold

diff utils_find-boxes.xml @ 6:4d16cf9414cf draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
author erasmus-medical-center
date Fri, 24 Feb 2017 04:18:22 -0500
parents b7cf9b172cfe
children
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line diff
--- a/utils_find-boxes.xml	Wed Aug 03 04:54:40 2016 -0400
+++ b/utils_find-boxes.xml	Fri Feb 24 04:18:22 2017 -0500
@@ -5,19 +5,10 @@
         <import>macros.xml</import>
     </macros>
     
-    <requirements>
-        <requirement type="package" version="2.7.10">python</requirement>
-        <requirement type="package" version="1.9">numpy</requirement>
-        <requirement type="package" version="0.8.2.1">pysam</requirement>
-        <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement>
-    </requirements>
+    <expand macro="requirements" />
+    <expand macro="version_command" />
     
-    <expand macro="stdio" />
-
-    <version_command>@VERSION_COMMAND_UTILS@</version_command>
-    
-    <command><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
         segmentation-fold-utils
             find-boxes
                 --box1 '${box1}'
@@ -72,7 +63,7 @@
 
     <tests>
         <test>
-            <param name="fasta_input" value="FindBoxes.genome.fa" format="fasta" />
+            <param name="fasta_input" value="FindBoxes.genome.fa" ftype="fasta" />
             <param name="box1" value="NRUGAUG" />
             <param name="box2" value="CUGA" />
             <param name="forward" value="--forward" />