Mercurial > repos > yhoogstrate > show_metadata
annotate show_metadata.xml @ 0:9d9223704c63 draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
author | yhoogstrate |
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date | Fri, 16 Oct 2015 05:26:45 -0400 |
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9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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1 <tool id="show_metadata" name="Show Metadata" version="1.0.0"> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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2 <description>Debugging utility: show all metadata of a history item</description> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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3 <command><![CDATA[ |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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4 #for $metadata_element, $metadata_value in $input.metadata.items() |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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5 echo "$metadata_element: $metadata_value" >> $output ; |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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6 #end for |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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7 ]]></command> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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8 <inputs> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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9 <param name="input" type="data" label="File to scan for all metadata" /> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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10 </inputs> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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11 <outputs> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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12 <data format="txt" name="output" label="${tool.name} on ${input.name}" /> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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13 </outputs> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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14 <tests> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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15 <test> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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16 <param name="input" value="test1.tabular" ftype="tabular" dbkey="hg19" /> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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17 <output name="output" file="test1.metadata_report"/> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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18 </test> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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19 </tests> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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20 |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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21 <help><![CDATA[ |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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22 ** What it does? ** |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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23 |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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24 Shows all the metadata elements of a history item. |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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25 ]]></help> |
9d9223704c63
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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26 </tool> |