annotate show_metadata.xml @ 0:9d9223704c63 draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
author yhoogstrate
date Fri, 16 Oct 2015 05:26:45 -0400
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9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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1 <tool id="show_metadata" name="Show Metadata" version="1.0.0">
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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2 <description>Debugging utility: show all metadata of a history item</description>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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3 <command><![CDATA[
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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4 #for $metadata_element, $metadata_value in $input.metadata.items()
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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5 echo "$metadata_element: $metadata_value" >> $output ;
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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6 #end for
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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7 ]]></command>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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8 <inputs>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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9 <param name="input" type="data" label="File to scan for all metadata" />
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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10 </inputs>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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11 <outputs>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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12 <data format="txt" name="output" label="${tool.name} on ${input.name}" />
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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13 </outputs>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
parents:
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14 <tests>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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15 <test>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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16 <param name="input" value="test1.tabular" ftype="tabular" dbkey="hg19" />
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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17 <output name="output" file="test1.metadata_report"/>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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18 </test>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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19 </tests>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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20
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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21 <help><![CDATA[
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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22 ** What it does? **
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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23
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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24 Shows all the metadata elements of a history item.
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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25 ]]></help>
9d9223704c63 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7
yhoogstrate
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26 </tool>