comparison xls2tab.xml @ 20:ac37b65a50da draft

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20:ac37b65a50da

<tool id="xls2tab_R" name="XLS sheet to Tabular" version="0.1">
    <requirements>
        <requirement type="package" version="3.2.1">R</requirement>
		<requirement type="package" version="1.1.0">r-readxl</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript '$__tool_directory__/xlsx2tab.R' '$input1' '$sheet' '$output' ]]>
    </command>
    <inputs>
        <param format="excel.xls" name="input1" type="data" label="XLS file"/>
        <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
            <sanitizer sanitize="False"/>
        </param>

    </inputs>

    <outputs>
        <data format="tabular" name="output" from_work_dir="out.tabular" />
    </outputs>
    
    <tests>
        <test>
            <param name="input1" value="example_csv.csv"/>
            <param name="sheet" value=","/>
            <output name="output" file="out.tabular"/>
        </test>
    </tests>

    <help>
**What it does**

Extract a sheet from XLS file to a tabular file.


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**Example**

Input XLS with a sheet named 'données in situ'

Output tabular


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**Arguments**

Input: xls file.
Excel sheet name: données in situ




    </help>
</tool>