Mercurial > repos > ylebras > xls2tabular

changeset 20:ac37b65a50da draft

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Uploaded
author ylebras
date Wed, 05 Dec 2018 16:03:57 -0500
parents 09ebc5a5cdc3
children 5e5e26403322
files xls2tab.xml
diffstat 1 files changed, 55 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/xls2tab.xml	Wed Dec 05 16:03:57 2018 -0500
@@ -0,0 +1,55 @@
+<tool id="xls2tab_R" name="XLS sheet to Tabular" version="0.1">
+    <requirements>
+        <requirement type="package" version="3.2.1">R</requirement>
+		<requirement type="package" version="1.1.0">r-readxl</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript '$__tool_directory__/xlsx2tab.R' '$input1' '$sheet' '$output' ]]>
+    </command>
+    <inputs>
+        <param format="excel.xls" name="input1" type="data" label="XLS file"/>
+        <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
+            <sanitizer sanitize="False"/>
+        </param>
+
+    </inputs>
+
+    <outputs>
+        <data format="tabular" name="output" from_work_dir="out.tabular" />
+    </outputs>
+    
+    <tests>
+        <test>
+            <param name="input1" value="example_csv.csv"/>
+            <param name="sheet" value=","/>
+            <output name="output" file="out.tabular"/>
+        </test>
+    </tests>
+
+    <help>
+**What it does**
+
+Extract a sheet from XLS file to a tabular file.
+
+
+------
+
+**Example**
+
+Input XLS with a sheet named 'données in situ'
+
+Output tabular
+
+
+------
+
+**Arguments**
+
+Input: xls file.
+Excel sheet name: données in situ
+
+
+
+
+    </help>
+</tool>