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author ynewton
date Thu, 17 Jan 2013 20:24:14 -0500
parents 28d795d45ca2
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<tool id="extract_tumor_vs_normal_ID_lists" name="Extract_tumor_vs_normal_TCGA_IDs" version="1.0.0">
  <description>Extract normal vs. tumor IDs for TCGA samples</description>
  <command interpreter="Python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2
  </command>
  <inputs>
	  <param name="tableData" format="tabular" type="data" label="Input data"/>
  </inputs>
  <outputs>
      <data name="outfile1" format="tabular"/>
      <data name="outfile2" format="tabular"/>
  </outputs>
  <help>
**What it does**

Takes a matrix of TCGA samples and extract two lists: normal sample IDs and tumor sample IDs.

  </help>   
</tool>